##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139835_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8806302 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.490563235283098 31.0 31.0 34.0 30.0 34.0 2 31.744116202237898 31.0 31.0 34.0 30.0 34.0 3 31.755297967296602 31.0 31.0 34.0 30.0 34.0 4 35.53096214506384 37.0 35.0 37.0 33.0 37.0 5 35.34736714684552 37.0 35.0 37.0 33.0 37.0 6 35.335700728864396 37.0 35.0 37.0 33.0 37.0 7 35.197548641870334 37.0 35.0 37.0 32.0 37.0 8 35.1754709297955 37.0 35.0 37.0 32.0 37.0 9 36.67254552478441 39.0 35.0 39.0 32.0 39.0 10-11 36.587053680421135 38.0 35.0 39.0 32.0 39.0 12-13 36.51987940000241 38.0 35.0 39.0 32.0 39.0 14-15 37.553467051209466 39.0 36.0 41.0 32.0 41.0 16-17 37.586511171204435 39.0 36.0 41.0 32.0 41.0 18-19 37.60731683969048 39.0 36.5 41.0 32.0 41.0 20-21 37.58106223453577 39.0 36.0 41.0 32.0 41.0 22-23 37.511088568075415 39.0 36.0 41.0 32.0 41.0 24-25 37.410174395523505 39.0 36.0 41.0 32.0 41.0 26-27 37.2268668625989 39.0 36.0 40.0 31.0 41.0 28-29 37.07472146482776 39.0 36.0 40.0 31.0 41.0 30-31 36.92567937023091 39.0 36.0 40.0 31.0 41.0 32-33 37.16333830828539 39.0 36.0 40.0 31.0 41.0 34-35 37.168672481236044 39.0 36.0 40.0 31.0 41.0 36-37 37.05134261452699 39.0 36.0 40.0 31.0 41.0 38-39 36.93326007117727 39.0 35.0 40.0 30.0 41.0 40-41 36.91256411939094 39.0 35.0 40.0 30.0 41.0 42-43 36.83993877965213 39.0 35.0 40.0 30.0 41.0 44-45 36.81723652649691 39.0 35.0 40.0 30.0 41.0 46-47 36.836363318433904 39.0 35.0 40.0 30.0 41.0 48-49 36.760100966065586 39.0 35.0 40.0 30.0 41.0 50-51 36.67588092133506 39.0 35.0 40.0 30.0 41.0 52-53 36.549509470885795 38.5 35.0 40.0 30.0 41.0 54-55 36.44274816139573 38.0 35.0 40.0 30.0 41.0 56-57 36.268628932305134 38.0 34.5 40.0 29.5 41.0 58-59 36.12385880998815 38.0 34.0 40.0 29.0 41.0 60-61 35.96621733308941 38.0 34.0 40.0 29.0 41.0 62-63 35.738240167281305 37.5 34.0 40.0 28.0 41.0 64-65 35.5285667736441 37.0 34.0 40.0 28.0 41.0 66-67 35.275710045370516 37.0 34.0 39.0 28.0 41.0 68-69 35.00241808524952 36.0 33.0 39.0 28.0 40.5 70-71 34.722949466521584 36.0 33.0 39.0 28.0 40.0 72-73 34.419377941964754 35.0 33.0 38.5 28.0 40.0 74-75 34.10110234678163 35.0 32.5 37.5 28.0 40.0 76-77 33.07675999833373 34.0 31.0 36.0 26.0 39.0 78-79 33.45154427852647 35.0 32.0 36.5 27.0 39.0 80-81 33.38416250282721 35.0 32.0 36.0 27.0 38.5 82-83 33.19412234367296 35.0 32.0 36.0 27.0 37.5 84-85 32.9645305828382 34.0 32.0 35.5 27.0 37.0 86-87 32.79276488757223 34.0 32.0 35.0 27.0 37.0 88-89 32.60131968095682 34.0 32.0 35.0 27.0 36.0 90-91 32.504011776499894 34.0 32.0 35.0 27.0 36.0 92-93 32.46523048930669 34.0 32.0 35.0 27.0 36.0 94-95 32.46002686104766 34.0 32.0 35.0 27.0 35.0 96-97 32.36788439356675 34.0 31.0 35.0 27.0 35.0 98-99 32.521230937375776 34.0 31.5 35.0 27.5 35.0 100-101 32.0723824109449 33.5 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 1.0 19 20.0 20 155.0 21 698.0 22 3037.0 23 9483.0 24 23840.0 25 48360.0 26 83331.0 27 127021.0 28 177045.0 29 230529.0 30 288204.0 31 351183.0 32 427109.0 33 525578.0 34 662271.0 35 855064.0 36 1168091.0 37 1604790.0 38 1550923.0 39 654981.0 40 14587.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.938444763761225 23.08881753090003 14.94840853743149 25.024329167907254 2 14.762682957212903 23.82509420470313 38.601006644379815 22.81121619370415 3 17.234839323021173 27.41295949196382 31.72196456583024 23.63023661918476 4 12.469558731917212 19.447686440914698 38.4156255372573 29.667129289910793 5 12.52084018921904 38.42174615406104 36.376551701270294 12.680861955449632 6 29.79795605465268 39.29539323089306 18.204928697653113 12.70172201680115 7 25.428800874646363 32.93791196350068 24.196649172376784 17.43663798947617 8 24.10088820483331 37.3920744485029 21.498490512816844 17.008546833846943 9 25.252699714363647 15.734595520344408 21.355626913544416 37.65707785174753 10-11 23.827197840818997 27.038432249995516 29.79712710284067 19.337242806344822 12-13 24.304577554753852 24.72128254656079 29.695499663306546 21.278640235378816 14-15 21.43725027826663 26.26147729205744 26.957632159333166 25.34364027034276 16-17 21.328708690662666 29.104117710248868 27.827094732840184 21.740078866248286 18-19 21.33475096173096 28.53000429126699 29.229512606774932 20.905732140227112 20-21 22.002549224285403 27.799428241516743 29.02829221051178 21.16973032368607 22-23 21.713939494989717 27.795634820127084 28.857944590569318 21.63248109431388 24-25 21.563657191169963 27.870882139774906 28.95065693822067 21.61480373083446 26-27 21.618340492822625 27.97706273313049 28.851432792037144 21.55316398200974 28-29 21.608960022420757 28.06632458481733 28.84277637490072 21.481939017861194 30-31 21.787405260153776 27.986326274695806 28.761205639756724 21.46506282539369 32-33 21.622157365471974 28.139792471724633 28.674446621247906 21.56360354155548 34-35 21.719720798532116 28.119648498515954 28.728051299522257 21.432579403429674 36-37 21.71144712685763 28.089935425309783 28.700961277402264 21.497656170430325 38-39 21.639843365893785 28.161135163849536 28.70573241989618 21.4932890503605 40-41 21.824490021118766 28.044101712862258 28.59181615521061 21.53959211080837 42-43 21.6829373574357 28.215375515441288 28.375323607847896 21.726363519275115 44-45 21.832636608434616 28.220884109418193 28.20579873777736 21.740680544369834 46-47 21.853120543705817 28.201486695591495 28.056992020388964 21.888400740313724 48-49 21.779564337185334 28.31159382217507 28.06834357860221 21.840498262037382 50-51 21.82166738111041 28.344395708064734 27.999964184543618 21.833972726281246 52-53 21.951978620277536 28.26663361924135 27.88983261001221 21.8915551504689 54-55 21.869996757206785 28.2088335926656 27.96523919083243 21.955930459295185 56-57 21.923033713767463 28.281212948729856 27.892384693627427 21.90336864387525 58-59 21.91483505409301 28.31029742548846 27.888269166705705 21.88659835371282 60-61 21.98791921473174 28.262784826690517 27.902787650405536 21.846508308172204 62-63 21.9692606947225 28.31451652574726 27.879178263797083 21.83704451573316 64-65 21.905186153436528 28.24285315459575 27.901820371718593 21.95014032024913 66-67 21.9826795678655 28.30414739548366 27.749599626294874 21.963573410355966 68-69 21.9606623397562 28.265563995605593 27.78759241408686 21.98618125055135 70-71 21.928524868956753 28.08226784906256 27.872906205585046 22.116301076395644 72-73 21.964701654058565 28.145383308710116 27.79910343994718 22.09081159728414 74-75 21.836386031893397 28.20430519004049 27.819339788596615 22.139968989469494 76-77 21.94601806713176 28.13892657944454 27.798259692867568 22.116795660556132 78-79 21.930794563558052 28.107897892612645 27.781957987099375 22.179349556729928 80-81 21.973235318950344 28.09777346034503 27.772218619207074 22.156772601497554 82-83 21.93367731320268 28.10132277498652 27.875330079571853 22.089669832238947 84-85 21.95047178036308 28.088238300492364 27.834492257382554 22.126797661761998 86-87 21.946343479489606 28.05307660013101 27.832249453976377 22.168330466403006 88-89 21.92234042464505 28.03500999964153 27.839493873916982 22.203155701796433 90-91 21.912922699480987 28.00275269845967 27.962385580003257 22.121939022056086 92-93 21.9989173585118 27.910959934849583 27.92697709659282 22.163145610045795 94-95 21.78087550834361 27.995066928047013 28.04787010329347 22.17618746031591 96-97 21.714779117476592 28.053895839054544 28.07840606025166 22.152918983217205 98-99 21.899157955251127 28.642855534580818 28.149368127725605 21.308618382442457 100-101 25.640974489049302 35.8568571641051 28.99895443094137 9.503213915904228 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2484.0 1 2184.5 2 2586.5 3 3444.0 4 4399.0 5 6361.5 6 8094.0 7 9745.0 8 10990.5 9 11126.5 10 10640.0 11 10089.5 12 11075.5 13 14717.5 14 23010.5 15 34102.0 16 42320.5 17 45634.0 18 46409.5 19 46740.0 20 46542.0 21 46846.0 22 48953.0 23 54933.0 24 65318.5 25 79785.5 26 98052.0 27 117224.0 28 137702.5 29 159714.0 30 179823.0 31 199948.5 32 220907.0 33 240261.0 34 258946.0 35 277087.5 36 296536.0 37 313841.0 38 328358.5 39 340227.5 40 350915.5 41 363348.5 42 371412.5 43 376956.5 44 381606.5 45 384298.0 46 385136.5 47 383129.0 48 378565.5 49 370283.5 50 360326.0 51 347607.0 52 329472.0 53 309094.5 54 288181.0 55 265496.0 56 242061.0 57 217832.0 58 192409.0 59 165616.0 60 138907.0 61 113910.5 62 91216.5 63 71444.0 64 53972.0 65 40531.5 66 30426.0 67 23036.0 68 17664.5 69 13041.0 70 9492.0 71 7007.5 72 5024.5 73 3536.5 74 2518.0 75 1805.0 76 1321.0 77 930.0 78 645.5 79 467.0 80 342.5 81 239.0 82 170.5 83 116.0 84 74.5 85 50.5 86 37.5 87 29.5 88 21.0 89 13.0 90 12.0 91 12.5 92 10.0 93 6.0 94 2.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002418722410382928 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 8.175963077350742E-4 14-15 0.0 16-17 0.0 18-19 5.109976923344215E-4 20-21 0.0 22-23 0.0013629217589777361 24-25 2.158556543701085E-4 26-27 0.005040865965078904 28-29 4.2652942504231594E-4 30-31 0.0 32-33 0.0 34-35 1.5483006139183967E-4 36-37 0.018779423982276378 38-39 0.00766135708055408 40-41 0.012964232041794945 42-43 0.0017417556897352533 44-45 0.003007398259627014 46-47 0.0 48-49 7.066712221356464E-4 50-51 6.217960791155921E-6 52-53 0.0 54-55 0.004625076771821106 56-57 0.009016372417556907 58-59 0.012346315320581875 60-61 0.006376792131872856 62-63 0.007200535242023209 64-65 8.773126539632702E-4 66-67 8.280018066999422E-5 68-69 0.0 70-71 1.2814556424841272E-4 72-73 0.0 74-75 1.1017466724496126E-4 76-77 3.732352690011089E-5 78-79 7.592710603000168E-6 80-81 0.0021107347096406067 82-83 0.002181060286632266 84-85 0.00909045070598893 86-87 0.010257820853365757 88-89 0.043081179274369615 90-91 4.8552744891101305E-4 92-93 6.28120044558138E-4 94-95 8.954242923237962E-6 96-97 0.00853019866111038 98-99 1.4620672500250014E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 308.0 20-21 985.0 22-23 1942.0 24-25 3766.0 26-27 5394.0 28-29 9923.0 30-31 21675.0 32-33 32564.0 34-35 47415.0 36-37 68322.0 38-39 75410.0 40-41 77996.0 42-43 89034.0 44-45 105034.0 46-47 105005.0 48-49 97497.0 50-51 89691.0 52-53 90742.0 54-55 99490.0 56-57 104049.0 58-59 103376.0 60-61 101531.0 62-63 97828.0 64-65 103656.0 66-67 109879.0 68-69 112377.0 70-71 110683.0 72-73 106630.0 74-75 108750.0 76-77 110691.0 78-79 117968.0 80-81 118224.0 82-83 112935.0 84-85 114075.0 86-87 119565.0 88-89 128443.0 90-91 137365.0 92-93 142550.0 94-95 171752.0 96-97 216067.0 98-99 680050.0 100-101 4555665.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.06457307657368 #Duplication Level Percentage of deduplicated Percentage of total 1 91.88805790715081 80.92082590428717 2 5.796939995478685 10.210100917046908 3 1.3166789679988506 3.478583135871672 4 0.4657973468183435 1.6408097795103258 5 0.19724613375585756 0.8685198280107174 6 0.1040914840277069 0.5500063261084198 7 0.06739489453189491 0.41545718301444257 8 0.0417909386571523 0.29442409370491174 9 0.027389138762000442 0.21708115308095438 >10 0.09270287206976469 1.2705853163100398 >50 0.001679889343583359 0.09545571043597528 >100 2.3043140535347164E-4 0.0381506526184364 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.2711008548196507E-5 2 0.0 0.0 0.0 0.0 2.2711008548196507E-5 3 0.0 2.2711008548196507E-5 0.0 0.0 2.2711008548196507E-5 4 0.0 6.813302564458953E-5 0.0 0.0 2.2711008548196507E-5 5 0.0 7.948852991868777E-5 0.0 0.0 2.2711008548196507E-5 6 0.0 7.948852991868777E-5 0.0 0.0 2.2711008548196507E-5 7 1.1355504274098253E-5 7.948852991868777E-5 0.0 0.0 2.2711008548196507E-5 8 1.1355504274098253E-5 7.948852991868777E-5 0.0 0.0 2.2711008548196507E-5 9 1.1355504274098253E-5 1.5897705983737554E-4 0.0 0.0 3.406651282229476E-5 10-11 2.2711008548196507E-5 1.6465481197442468E-4 0.0 2.8388760685245635E-5 3.406651282229476E-5 12-13 2.2711008548196507E-5 1.703325641114738E-4 0.0 4.542201709639301E-5 3.406651282229476E-5 14-15 2.2711008548196507E-5 2.5549884616721073E-4 0.0 6.24552735075404E-5 5.677752137049127E-5 16-17 2.2711008548196507E-5 2.725321025783581E-4 0.0 6.813302564458953E-5 5.677752137049127E-5 18-19 2.2711008548196507E-5 2.725321025783581E-4 0.0 7.381077778163865E-5 5.677752137049127E-5 20-21 2.2711008548196507E-5 2.725321025783581E-4 0.0 9.084403419278603E-5 5.677752137049127E-5 22-23 3.406651282229476E-5 3.12276367537702E-4 0.0 9.652178632983515E-5 5.677752137049127E-5 24-25 4.542201709639301E-5 3.2930962394884936E-4 0.0 1.4194380342622817E-4 5.677752137049127E-5 26-27 4.542201709639301E-5 3.406651282229476E-4 0.0 2.3278783761901422E-4 5.677752137049127E-5 28-29 4.542201709639301E-5 3.4634288035999673E-4 0.0 5.8480847011606E-4 5.677752137049127E-5 30-31 5.109976923344214E-5 3.974426495934389E-4 0.0 0.0015897705983737554 5.677752137049127E-5 32-33 5.677752137049127E-5 4.0879815386753713E-4 0.0 0.0038438381967822585 5.677752137049127E-5 34-35 7.948852991868777E-5 4.655756752380284E-4 0.0 0.007517343829453044 5.677752137049127E-5 36-37 1.0219953846688428E-4 5.337087008826179E-4 0.0 0.012916886111786763 5.677752137049127E-5 38-39 1.0219953846688428E-4 5.564197094308144E-4 0.0 0.021217759736152586 5.677752137049127E-5 40-41 1.1355504274098254E-4 5.904862222531092E-4 0.0 0.029700321428903984 5.677752137049127E-5 42-43 1.1355504274098254E-4 6.415859914865514E-4 0.0 0.036553368258322276 5.677752137049127E-5 44-45 1.1355504274098254E-4 7.551410342275339E-4 0.0 0.044973474677566135 6.24552735075404E-5 46-47 1.1355504274098254E-4 8.289518120091725E-4 0.0 0.05461429780627555 7.381077778163865E-5 48-49 1.1355504274098254E-4 8.346295641462216E-4 0.0 0.06350565765289448 7.948852991868777E-5 50-51 1.1355504274098254E-4 8.800515812426147E-4 0.0 0.07161348770460063 7.948852991868777E-5 52-53 1.1355504274098254E-4 8.97084837653762E-4 0.0 0.07974402876485498 7.948852991868777E-5 54-55 1.1355504274098254E-4 9.027625897908111E-4 0.0 0.08962899523545752 7.948852991868777E-5 56-57 1.1355504274098254E-4 9.084403419278603E-4 0.0 0.0994969284496489 7.948852991868777E-5 58-59 1.1355504274098254E-4 9.084403419278603E-4 0.0 0.10972823780061142 7.948852991868777E-5 60-61 1.1355504274098254E-4 9.425068547501551E-4 0.0 0.11917601735666117 7.948852991868777E-5 62-63 1.1355504274098254E-4 9.822511197094988E-4 0.0 0.1276188347844532 7.948852991868777E-5 64-65 1.1355504274098254E-4 0.0011355504274098253 0.0 0.1361808850071233 8.51662820557369E-5 66-67 1.1355504274098254E-4 0.0011809724445062185 0.0 0.14519147764862028 9.084403419278603E-5 68-69 1.1355504274098254E-4 0.0012036834530544148 0.0 0.1542304590508025 9.084403419278603E-5 70-71 1.1355504274098254E-4 0.0012150389573285132 0.0 0.1625767546922647 9.084403419278603E-5 72-73 1.1355504274098254E-4 0.0012150389573285132 0.0 0.16927650221398266 1.3626605128917905E-4 74-75 1.1355504274098254E-4 0.0012774942308360535 0.0 0.1748179882997426 1.3626605128917905E-4 76-77 1.1355504274098254E-4 0.0013229162479324466 0.0 0.18003584251369076 1.3626605128917905E-4 78-79 1.1355504274098254E-4 0.0013285940000694956 0.0 0.18469159926607104 1.3626605128917905E-4 80-81 1.1355504274098254E-4 0.0013285940000694956 0.0 0.18769513014657002 1.3626605128917905E-4 82-83 1.1355504274098254E-4 0.0013399495043435938 0.0 0.1895290440868369 1.3626605128917905E-4 84-85 1.1355504274098254E-4 0.0013513050086176922 0.0 0.1910336484031549 1.3626605128917905E-4 86-87 1.1355504274098254E-4 0.0013626605128917904 0.0 0.19127779174504805 1.3626605128917905E-4 88-89 1.1355504274098254E-4 0.001385371521439987 0.0 0.19130618050573328 1.3626605128917905E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8280 0.0 43.586716 1 GTATCAA 14295 0.0 31.729418 1 TCAACGC 17395 0.0 25.511 4 ATCAACG 17725 0.0 25.059072 3 CAACGCA 18070 0.0 24.580635 5 TATCAAC 18935 0.0 23.71699 2 AACGCAG 18760 0.0 23.65479 6 GTACATG 20010 0.0 20.096542 1 ACGCAGA 22470 0.0 19.767563 7 CGCAGAG 22700 0.0 19.603243 8 TACATGG 20690 0.0 19.396585 2 ACATGGG 20925 0.0 18.593014 3 AGAGTAC 24285 0.0 16.48302 10-11 CATGGGG 15305 0.0 16.2445 4 GCAGAGT 27430 0.0 15.925213 9 GAGTACT 16445 0.0 15.490948 12-13 TATACTG 5055 0.0 15.10229 5 CAGAGTA 26770 0.0 14.823311 10-11 TATACCG 625 0.0 14.370274 5 AGTACTT 18665 0.0 14.326517 12-13 >>END_MODULE