##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139834_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10179204 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.557435237568676 31.0 31.0 34.0 30.0 34.0 2 31.808083028889097 31.0 31.0 34.0 30.0 34.0 3 31.822742623097053 31.0 31.0 34.0 30.0 34.0 4 35.586115672698966 37.0 35.0 37.0 33.0 37.0 5 35.40783129997198 37.0 35.0 37.0 33.0 37.0 6 35.39651047370698 37.0 35.0 37.0 33.0 37.0 7 35.256451093818335 37.0 35.0 37.0 32.0 37.0 8 35.235105220408194 37.0 35.0 37.0 32.0 37.0 9 36.748716009621184 39.0 35.0 39.0 32.0 39.0 10-11 36.66709312437397 39.0 35.0 39.0 32.0 39.0 12-13 36.59627231166602 38.0 35.0 39.0 32.0 39.0 14-15 37.65182650824171 39.0 36.5 41.0 32.0 41.0 16-17 37.68788340424261 39.0 37.0 41.0 32.0 41.0 18-19 37.70688017452052 39.0 37.0 41.0 32.0 41.0 20-21 37.677509328730494 39.0 37.0 41.0 32.0 41.0 22-23 37.605498015893374 39.0 36.5 41.0 32.0 41.0 24-25 37.50920524664289 39.0 36.0 41.0 32.0 41.0 26-27 37.337093682597846 39.0 36.0 40.5 31.5 41.0 28-29 37.18826407826045 39.0 36.0 40.0 31.0 41.0 30-31 37.04265604362791 39.0 36.0 40.0 31.0 41.0 32-33 37.28153548245086 39.0 36.0 40.0 31.0 41.0 34-35 37.288347045700235 39.0 36.0 41.0 31.0 41.0 36-37 37.17258552708612 39.0 36.0 40.5 31.0 41.0 38-39 37.05760740896067 39.0 36.0 40.0 31.0 41.0 40-41 37.03652268283739 39.0 35.5 40.0 31.0 41.0 42-43 36.96512235971745 39.0 35.0 40.0 30.5 41.0 44-45 36.935534060292746 39.0 35.0 40.0 30.5 41.0 46-47 36.950400983005956 39.0 35.0 40.0 30.5 41.0 48-49 36.87473578777663 39.0 35.0 40.0 30.0 41.0 50-51 36.79120658599453 39.0 35.0 40.0 30.0 41.0 52-53 36.663469674303094 39.0 35.0 40.0 30.0 41.0 54-55 36.55166455177814 38.0 35.0 40.0 30.0 41.0 56-57 36.38107363240431 38.0 35.0 40.0 30.0 41.0 58-59 36.23562888763503 38.0 34.5 40.0 29.0 41.0 60-61 36.073695753737205 38.0 34.0 40.0 29.0 41.0 62-63 35.843698251999385 38.0 34.0 40.0 29.0 41.0 64-65 35.62981670810311 37.0 34.0 40.0 29.0 41.0 66-67 35.37381451100905 37.0 34.0 39.5 28.0 41.0 68-69 35.099340932496744 36.0 33.5 39.0 28.0 40.5 70-71 34.81613938390303 36.0 33.0 39.0 28.0 40.0 72-73 34.51203821090618 35.5 33.0 38.5 28.0 40.0 74-75 34.190617881305656 35.0 33.0 37.5 28.0 40.0 76-77 33.151597774783795 34.5 31.5 36.0 26.0 39.0 78-79 33.52257503923401 35.0 32.0 36.5 27.0 39.0 80-81 33.45694217106298 35.0 32.0 36.0 28.0 38.5 82-83 33.26918898810008 35.0 32.0 36.0 27.5 37.5 84-85 33.04018688569998 34.5 32.0 35.5 27.0 37.0 86-87 32.87207361222935 34.0 32.0 35.0 27.0 37.0 88-89 32.6836301416032 34.0 32.0 35.0 27.0 36.0 90-91 32.5855801904852 34.0 32.0 35.0 27.0 36.0 92-93 32.54837306924831 34.0 32.0 35.0 27.0 36.0 94-95 32.536042443758774 34.0 32.0 35.0 27.0 35.0 96-97 32.44768280370553 34.0 32.0 35.0 27.0 35.0 98-99 32.59263779237483 34.0 32.0 35.0 28.0 35.0 100-101 32.14298457563244 33.5 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 24.0 20 130.0 21 723.0 22 3151.0 23 10295.0 24 25700.0 25 52384.0 26 91720.0 27 140896.0 28 196463.0 29 256561.0 30 322278.0 31 394808.0 32 483014.0 33 595311.0 34 752991.0 35 976547.0 36 1348359.0 37 1879292.0 38 1855181.0 39 773102.0 40 20270.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.4843651821891 22.59204157810375 14.687936306218049 25.235656933489103 2 14.711889876541706 23.442889670920334 38.809663477488684 23.035556975049275 3 17.33416483253504 27.08117452012947 31.47248055938362 24.112180087951867 4 12.458145057314894 19.075794138716546 38.34303743200353 30.123023371965036 5 12.666177040955265 38.215768148472115 36.26786534585612 12.850189464716493 6 30.070091924673086 39.00615411578352 18.145298984085592 12.778454975457807 7 25.717276124930788 32.70995453082579 24.032949924178748 17.539819420064674 8 24.193325922144794 37.29743504501924 21.427677449042186 17.081561583793782 9 25.326243584468884 15.795871661477657 21.212061375329544 37.665823378723914 10-11 23.918780879133575 26.923048206912842 29.661376272643714 19.49679464130987 12-13 24.40265283942215 24.56779954988299 29.588223199013747 21.441324411681116 14-15 21.535077791937365 26.0868335087891 26.790243127065732 25.587845572207808 16-17 21.45126475508301 29.00083346399188 27.651174885580442 21.896726895344663 18-19 21.50558101061384 28.442140608851812 28.996149977011854 21.056128403522493 20-21 22.14669743635944 27.7058490334235 28.807991409060385 21.33946212115667 22-23 21.86029608717107 27.66350421896608 28.666413877850534 21.80978581601232 24-25 21.705032113732102 27.77439160280589 28.74015993742814 21.780416346033874 26-27 21.730859064384216 27.872966278433285 28.668560608761062 21.72761404842144 28-29 21.741906895256808 27.954231003090058 28.639520271437384 21.66434183021575 30-31 21.920767469902845 27.845647258381206 28.558627807039468 21.67495746467648 32-33 21.735227909890874 28.00422723282836 28.533416608384503 21.72712824889626 34-35 21.845625294205593 28.009096133003336 28.53637600575186 21.608902567039216 36-37 21.82291236705347 27.987326385357807 28.507467418652816 21.682293828935915 38-39 21.72725930941226 28.033982441394183 28.58863177775498 21.650126471438575 40-41 21.899683721340867 27.941134110868788 28.450874447694396 21.70830772009594 42-43 21.790978218051844 28.062123761257013 28.267125047364434 21.87977297332671 44-45 21.91661425772701 28.07727609215023 28.133479717456783 21.872629932665983 46-47 21.95675859537902 28.091376476341683 27.961785462514698 21.99007946576459 48-49 21.863203654816914 28.199374383126752 27.95635144273378 21.981070519322554 50-51 21.90752086677316 28.253939262501564 27.874892336812035 21.96364753391324 52-53 22.026521632312882 28.150339154159425 27.790235923166346 22.032903290361347 54-55 21.963671167342664 28.075711856802226 27.869949095175635 22.09066788067948 56-57 21.99442893622486 28.15152773600817 27.8372887232631 22.01675460450387 58-59 21.98065408416566 28.20395268991514 27.780108558772753 22.03528466714645 60-61 22.039167995853457 28.16191724363212 27.82885958651728 21.970055173997142 62-63 22.05693950625176 28.246544055343325 27.7477311352661 21.948785303138816 64-65 21.998827104806562 28.17068648943958 27.771031385151296 22.059455020602563 66-67 22.025988833743117 28.197803771089625 27.67570499093301 22.100502404234245 68-69 21.988234244481035 28.168778324246485 27.73431926589897 22.108668165373505 70-71 21.993151254578788 28.019968878105107 27.781383755142286 22.20549611217382 72-73 22.04581012349438 28.080594465343744 27.690815904173398 22.182779506988474 74-75 21.906451745732348 28.144926518849406 27.694503164429797 22.254118570988453 76-77 22.013036453156335 28.09312104686349 27.669850426675364 22.223992073304814 78-79 21.968313407126903 28.131713924771063 27.618122250031384 22.281850418070654 80-81 22.02834565801752 28.117527505603018 27.63596702635478 22.21815981002468 82-83 21.948914046994933 28.129509082115344 27.731845830337882 22.189731040551845 84-85 22.012202820063667 28.11935755294817 27.675490370705226 22.19294925628294 86-87 21.94051208251999 28.111160646519785 27.74791034882321 22.200416922137013 88-89 21.95442359529395 28.101384744652556 27.728252001449967 22.215939658603528 90-91 21.970268273953625 28.13030613558946 27.75328794397694 22.146137646479975 92-93 21.975096298768914 28.098913222683613 27.757799349076294 22.16819112947118 94-95 21.830432350568415 28.130933908673246 27.851122840271998 22.18751090048634 96-97 21.726307720480463 28.219656795080123 27.88702038281227 22.16701510162714 98-99 21.90355448707606 28.829060311723513 27.96048597889574 21.30689922230469 100-101 25.648338786137842 36.106171051066255 28.748195330061062 9.497294832734845 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3895.0 1 3248.5 2 3353.0 3 4325.0 4 5431.0 5 7606.5 6 9509.0 7 11354.5 8 12767.5 9 12861.5 10 12101.5 11 11285.0 12 12107.5 13 15717.0 14 24341.0 15 35776.5 16 44141.5 17 47624.0 18 48749.0 19 49091.0 20 48760.0 21 49266.5 22 51916.0 23 58654.5 24 70262.0 25 86887.0 26 107260.5 27 128232.5 28 150843.0 29 175600.5 30 198510.0 31 220225.5 32 242716.0 33 264922.0 34 286622.5 35 307989.5 36 331233.0 37 351967.5 38 368888.0 39 384381.0 40 398563.5 41 411767.5 42 420331.5 43 427580.0 44 434232.0 45 437588.5 46 437704.0 47 435613.5 48 432492.5 49 425122.0 50 414743.0 51 400440.5 52 380843.0 53 359712.0 54 337529.0 55 312521.0 56 286441.0 57 259800.0 58 230647.5 59 198616.5 60 165754.5 61 135557.5 62 108823.0 63 85068.0 64 64316.5 65 48541.0 66 36803.5 67 28053.5 68 21548.0 69 15787.0 70 11292.0 71 8080.5 72 5676.0 73 3912.5 74 2624.5 75 1813.5 76 1289.0 77 889.0 78 619.5 79 432.5 80 301.0 81 213.0 82 151.0 83 97.5 84 65.5 85 49.5 86 41.5 87 35.5 88 27.5 89 19.5 90 12.5 91 7.5 92 5.0 93 4.0 94 4.0 95 3.5 96 3.0 97 3.0 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002957009212115211 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 7.171484135694697E-4 14-15 0.0 16-17 0.0 18-19 4.3225383831584476E-4 20-21 0.0 22-23 0.0015180854829513844 24-25 1.76911835839183E-4 26-27 0.004960694973208314 28-29 3.9357990491207894E-4 30-31 0.0 32-33 0.0 34-35 2.4785582405171104E-4 36-37 0.020359819057279075 38-39 0.008722446334358033 40-41 0.013499388807199674 42-43 0.001832522735532769 44-45 0.0030160654204696804 46-47 5.215349608353321E-6 48-49 8.175242601642793E-4 50-51 1.5993538610401397E-5 52-53 1.0770729723401198E-5 54-55 0.004441313028477471 56-57 0.009091348615389258 58-59 0.01159371821133453 60-61 0.006320551034668561 62-63 0.006974439962752721 64-65 7.978815204915922E-4 66-67 8.201172416176695E-5 68-69 0.0 70-71 1.2053391703891558E-4 72-73 0.0 74-75 1.178256942491449E-4 76-77 3.1467117208655246E-5 78-79 6.391930826524596E-6 80-81 0.0020795420952283415 82-83 0.002081548047944065 84-85 0.008968991877250981 86-87 0.010284962482780376 88-89 0.04247108923829518 90-91 4.7589627961335624E-4 92-93 5.807766275738659E-4 94-95 0.0 96-97 0.009266531764988173 98-99 5.6471619340626075E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 371.0 20-21 1087.0 22-23 2148.0 24-25 4296.0 26-27 6032.0 28-29 10555.0 30-31 23408.0 32-33 33815.0 34-35 48936.0 36-37 71715.0 38-39 78835.0 40-41 81050.0 42-43 92463.0 44-45 109458.0 46-47 109218.0 48-49 102926.0 50-51 95044.0 52-53 95789.0 54-55 104853.0 56-57 109285.0 58-59 110354.0 60-61 108441.0 62-63 104304.0 64-65 110313.0 66-67 117036.0 68-69 120836.0 70-71 119825.0 72-73 115156.0 74-75 117571.0 76-77 119911.0 78-79 128146.0 80-81 128171.0 82-83 124527.0 84-85 124380.0 86-87 131919.0 88-89 140767.0 90-91 150202.0 92-93 159292.0 94-95 193968.0 96-97 249582.0 98-99 810416.0 100-101 5512803.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.26128380888707 #Duplication Level Percentage of deduplicated Percentage of total 1 91.21601228174274 79.59626335632083 2 6.2037338941846585 10.826915680305193 3 1.4908470579755917 3.9027968472495727 4 0.5065366151755705 1.7680414134571387 5 0.22727970568096117 0.9916359450713336 6 0.11780188395159095 0.6167726177232814 7 0.07105324759616086 0.43401383228222 8 0.047763001488383215 0.3334288662753683 9 0.02703388013826806 0.21231099784807603 >10 0.09051338681843171 1.2130766553396188 >50 0.0012369663915048669 0.0703386953127737 >100 1.710267669647658E-4 0.02623604308379146 >500 1.7052089260736093E-5 0.008169049730830465 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.823950870814654E-6 0.0 0.0 0.0 3 0.0 9.823950870814654E-6 0.0 0.0 0.0 4 0.0 2.947185261244396E-5 0.0 0.0 0.0 5 0.0 2.947185261244396E-5 0.0 0.0 0.0 6 9.823950870814654E-5 2.947185261244396E-5 0.0 0.0 0.0 7 9.823950870814654E-5 2.947185261244396E-5 0.0 0.0 0.0 8 9.823950870814654E-5 3.9295803483258614E-5 0.0 0.0 0.0 9 9.823950870814654E-5 1.0806345957896119E-4 0.0 9.823950870814654E-6 9.823950870814654E-6 10-11 1.0806345957896119E-4 1.1788741044977584E-4 0.0 9.823950870814654E-6 9.823950870814654E-6 12-13 1.1788741044977584E-4 1.1788741044977584E-4 0.0 1.473592630622198E-5 9.823950870814654E-6 14-15 1.277113613205905E-4 1.670071648038491E-4 0.0 1.9647901741629307E-5 2.4559877177036634E-5 16-17 2.3086284546414436E-4 1.7683111567466376E-4 0.0 1.9647901741629307E-5 2.947185261244396E-5 18-19 2.3577482089955169E-4 2.013909928517004E-4 0.0 1.9647901741629307E-5 2.947185261244396E-5 20-21 2.3577482089955169E-4 2.210388945933297E-4 0.0 2.4559877177036634E-5 3.438382804785129E-5 22-23 2.603346980765883E-4 2.4559877177036634E-4 0.0 5.4031729789480595E-5 4.911975435407327E-5 24-25 2.947185261244396E-4 2.70158648947403E-4 0.0 1.277113613205905E-4 6.385568066029525E-5 26-27 3.2419037873688357E-4 2.8489457525362495E-4 0.0 2.0630296828710773E-4 6.876765609570258E-5 28-29 3.2419037873688357E-4 2.9963050155984693E-4 0.0 5.55053224201028E-4 6.876765609570258E-5 30-31 3.438382804785129E-4 3.291023541722909E-4 0.0 0.0017584872058758229 6.876765609570258E-5 32-33 3.5366223134932753E-4 3.487502559139202E-4 0.0 0.0043372743094646695 6.876765609570258E-5 34-35 3.7822210852636416E-4 4.2734186288043743E-4 0.0 0.008060551689503422 6.876765609570258E-5 36-37 3.9295803483258614E-4 4.911975435407327E-4 0.0 0.013807562948929996 7.36796315311099E-5 38-39 3.9295803483258614E-4 5.010214944115473E-4 0.0 0.02209897748389756 9.332753327273921E-5 40-41 3.9295803483258614E-4 5.010214944115473E-4 0.0 0.030670374618683348 9.823950870814654E-5 42-43 3.9295803483258614E-4 5.40317297894806E-4 0.0 0.03843620778206233 9.823950870814654E-5 44-45 4.076939611388081E-4 6.041729785551011E-4 0.0 0.04784755271630277 9.823950870814654E-5 46-47 4.371658137512521E-4 6.483807574737671E-4 0.0 0.058103757425433264 1.0806345957896119E-4 48-49 4.420777891866594E-4 6.876765609570258E-4 0.0 0.06730879939138659 1.1788741044977584E-4 50-51 4.8628556810532535E-4 7.859160696651723E-4 0.0 0.07643524975037341 1.1788741044977584E-4 52-53 5.304933470239913E-4 7.859160696651723E-4 0.0 0.08509506244299653 1.1788741044977584E-4 54-55 5.40317297894806E-4 7.908280451005797E-4 0.0 0.09484533368228007 1.1788741044977584E-4 56-57 5.40317297894806E-4 7.957400205359869E-4 0.0 0.10456122109351576 1.277113613205905E-4 58-59 5.501412487656206E-4 8.202998977130235E-4 0.0 0.11396765405232079 1.3753531219140515E-4 60-61 5.648771750718425E-4 8.301238485838383E-4 0.0 0.1224899314327525 1.473592630622198E-4 62-63 5.992610031196939E-4 8.595957011962821E-4 0.0 0.13023611669438984 1.473592630622198E-4 64-65 6.041729785551011E-4 9.725711362106507E-4 0.0 0.13847349949956794 1.5227123849762713E-4 66-67 6.090849539905085E-4 9.725711362106507E-4 0.0 0.14609197339988472 1.5718321393303446E-4 68-69 6.090849539905085E-4 9.823950870814654E-4 0.0 0.1539314861947948 1.5718321393303446E-4 70-71 6.139969294259159E-4 9.823950870814654E-4 0.0 0.16120612181463306 1.7683111567466376E-4 72-73 6.582047083445818E-4 9.922190379522801E-4 0.0 0.16756713000348555 2.1612691915792238E-4 74-75 6.582047083445818E-4 0.0010462507677417607 0.0 0.17334852509095997 2.1612691915792238E-4 76-77 6.680286592153964E-4 0.0010953705220958338 0.0 0.17815734904222374 2.1612691915792238E-4 78-79 6.680286592153964E-4 0.0011150184238374631 0.0 0.1822342886536118 2.1612691915792238E-4 80-81 6.778526100862111E-4 0.0011199303992728705 0.0 0.184901491315038 2.1612691915792238E-4 82-83 6.778526100862111E-4 0.001129754350143685 0.0 0.18675821802962195 2.1612691915792238E-4 84-85 6.778526100862111E-4 0.0011395783010144998 0.0 0.18847249745657912 2.1612691915792238E-4 86-87 6.778526100862111E-4 0.0011592262027561291 0.0 0.18870336030204327 2.1612691915792238E-4 88-89 6.778526100862111E-4 0.0012132579325456097 0.0 0.18875739203183275 2.1612691915792238E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9385 0.0 44.181793 1 GTATCAA 16125 0.0 30.38053 1 TCAACGC 18985 0.0 24.845608 4 ATCAACG 19360 0.0 24.407059 3 CAACGCA 19780 0.0 23.86791 5 AACGCAG 20555 0.0 22.988111 6 TATCAAC 21015 0.0 22.95716 2 GTACATG 23545 0.0 20.560558 1 TACATGG 23580 0.0 20.021608 2 ACGCAGA 24375 0.0 19.436726 7 ACATGGG 23805 0.0 19.259186 3 CGCAGAG 24755 0.0 19.138365 8 AGAGTAC 26335 0.0 16.436012 10-11 CATGGGG 17825 0.0 16.397001 4 GAGTACT 17505 0.0 15.540081 12-13 GCAGAGT 30455 0.0 15.230612 9 CAGAGTA 29425 0.0 14.7240715 10-11 GTGGTAT 5440 0.0 13.982848 1 AGTACTT 19860 0.0 13.863871 12-13 GAGTACA 17320 0.0 13.819979 1 >>END_MODULE