##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139832_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12623999 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.112438934762274 33.0 31.0 34.0 30.0 34.0 2 32.263322501847476 34.0 31.0 34.0 30.0 34.0 3 32.31469924862954 34.0 31.0 34.0 30.0 34.0 4 35.9549368627168 37.0 35.0 37.0 35.0 37.0 5 35.84352398950602 37.0 35.0 37.0 35.0 37.0 6 35.86153983377217 37.0 35.0 37.0 35.0 37.0 7 35.78540849060587 37.0 35.0 37.0 33.0 37.0 8 35.76843296644748 37.0 35.0 37.0 33.0 37.0 9 37.41570773254973 39.0 37.0 39.0 34.0 39.0 10-11 37.32991863354869 39.0 37.0 39.0 34.0 39.0 12-13 37.31291439424227 39.0 37.0 39.0 34.0 39.0 14-15 38.54865324371461 40.0 38.0 41.0 34.0 41.0 16-17 38.53175534947365 40.0 38.0 41.0 34.0 41.0 18-19 38.56884137902736 40.0 38.0 41.0 34.0 41.0 20-21 38.54198041190348 40.0 38.0 41.0 34.0 41.0 22-23 38.47770937973524 40.0 38.0 41.0 34.0 41.0 24-25 38.3956742381356 40.0 38.0 41.0 34.0 41.0 26-27 38.263059521402326 40.0 38.0 41.0 34.0 41.0 28-29 38.170743650514886 40.0 38.0 41.0 33.0 41.0 30-31 38.06076088548846 40.0 37.0 41.0 33.0 41.0 32-33 38.220980024895624 40.0 38.0 41.0 34.0 41.0 34-35 38.20957922285078 40.0 38.0 41.0 34.0 41.0 36-37 38.12974762966842 40.0 37.5 41.0 33.0 41.0 38-39 38.00598775409501 40.0 37.0 41.0 33.0 41.0 40-41 37.95623714486578 40.0 37.0 41.0 33.0 41.0 42-43 37.8820756008286 40.0 37.0 41.0 33.0 41.0 44-45 37.879466517640104 40.0 37.0 41.0 33.0 41.0 46-47 37.91597695639457 40.0 37.0 41.0 33.0 41.0 48-49 37.84391639497138 40.0 37.0 41.0 33.0 41.0 50-51 37.78150033409257 40.0 37.0 41.0 33.0 41.0 52-53 37.64715820550686 40.0 36.5 41.0 32.0 41.0 54-55 37.52207618535464 39.5 36.0 41.0 32.0 41.0 56-57 37.3560096051205 39.0 36.0 41.0 32.0 41.0 58-59 37.19451501123166 39.0 35.5 41.0 31.0 41.0 60-61 37.04186020004255 39.0 35.0 40.0 31.0 41.0 62-63 36.82096619426217 38.5 35.0 40.0 31.0 41.0 64-65 36.60205446117705 38.0 35.0 40.0 31.0 41.0 66-67 36.34532199486057 37.5 35.0 40.0 31.0 41.0 68-69 36.05698418284568 37.0 34.5 40.0 30.5 41.0 70-71 35.7721854613643 37.0 34.0 39.0 30.0 41.0 72-73 35.45188134670708 36.0 34.0 39.0 30.0 40.5 74-75 35.11126299759628 36.0 34.0 38.5 30.0 40.0 76-77 34.02118561238623 35.0 32.5 37.0 28.5 39.0 78-79 34.36765728675746 35.0 33.5 37.0 29.0 39.0 80-81 34.25353189953295 35.0 34.0 37.0 29.0 39.0 82-83 33.99858111082115 35.0 33.0 36.0 29.0 38.5 84-85 33.781461889715885 35.0 33.0 36.0 29.0 37.0 86-87 33.592896783121475 35.0 33.0 35.5 29.0 37.0 88-89 33.382320397291295 35.0 33.0 35.0 29.0 36.5 90-91 33.26004181596528 35.0 33.0 35.0 29.0 36.0 92-93 33.19015971550895 35.0 33.0 35.0 29.0 36.0 94-95 33.150801481333374 35.0 33.0 35.0 29.0 36.0 96-97 33.098059673101496 34.0 33.0 35.0 29.0 35.0 98-99 33.17088482795404 34.0 33.0 35.0 29.0 35.0 100-101 32.62571727853785 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 14.0 20 72.0 21 362.0 22 1643.0 23 5853.0 24 15674.0 25 33972.0 26 61944.0 27 100506.0 28 146001.0 29 200429.0 30 259866.0 31 331520.0 32 422211.0 33 544302.0 34 728889.0 35 1009164.0 36 1534948.0 37 2549218.0 38 3084774.0 39 1528999.0 40 63636.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.37915386400142 22.07474826320883 15.295723645098514 24.25037422769124 2 13.986297617348217 22.95883438964382 40.735689901483724 22.319178091524236 3 16.931069148532092 27.67808362468977 31.733312082803554 23.657535143974584 4 12.2272268874546 19.71788020578899 39.52460705993402 28.53028584682239 5 12.652234842540782 38.34472737204748 36.33551460198943 12.667523183422306 6 28.501142942105744 39.60112797854309 19.259721107392355 12.638007971958807 7 24.971453182149332 33.14705585765652 24.683454109906062 17.19803685028809 8 23.617722086321457 37.30270415895946 22.008754911973615 17.07081884274547 9 25.136836591954737 16.607391999951837 21.857487472868144 36.39828393522528 10-11 23.40993531447523 27.211840717034274 30.006391001773686 19.371832966716806 12-13 24.374562292028067 24.890725989442807 29.816368014604567 20.918343703924563 14-15 21.620732067548484 26.242829233430705 27.27561607062865 24.86082262839216 16-17 21.27132218562438 29.177739161734724 27.95267569333616 21.598262959304733 18-19 21.305775721647358 28.483802467520213 29.475142010066758 20.735279800765674 20-21 22.043359673413164 27.714374200666754 29.26784490864455 20.974421217275534 22-23 21.79915353515595 27.639428999682263 29.10040302964077 21.461014435521022 24-25 21.588845977457797 27.826393930899503 29.10239873689174 21.48236135475097 26-27 21.595766713405904 27.93447918782732 29.019266805067655 21.450487293699123 28-29 21.55873681726218 27.98098158302611 29.03510099231764 21.425180607394072 30-31 21.81087633138747 27.83515562846245 28.947656671109605 21.40631136904048 32-33 21.6008594519716 27.9979391748508 28.898009812721483 21.50319156045612 34-35 21.719809188351512 28.00254525238176 28.89260472055566 21.385040838711067 36-37 21.703403541428195 27.973448444581372 28.844593550484642 21.478554463505787 38-39 21.543101806816974 28.062935508539056 28.93593433097848 21.45802835366549 40-41 21.76595483200177 27.937277607695698 28.788356280152488 21.508411280150046 42-43 21.66850644170474 28.06364444044247 28.572690859133314 21.695158258719474 44-45 21.756218548868933 28.121336802384068 28.43672126588827 21.68572338285873 46-47 21.847867141439153 28.09482335389054 28.193570941877 21.8637385627933 48-49 21.76067065091566 28.186296104430888 28.19516607147718 21.85786717317627 50-51 21.79186608311024 28.282711530603972 28.068278140389037 21.857144245896755 52-53 21.94985888717357 28.16688770445996 27.965267699910846 21.917985708455625 54-55 21.887843908510632 28.050578370105328 28.051642348012606 22.009935373371434 56-57 21.923324937342734 28.128522289948048 28.011713549650935 21.93643922305828 58-59 21.896405249476956 28.16383760390007 27.99955509136755 21.94020205525543 60-61 21.924030406973987 28.140268449072924 28.013010671182037 21.922690472771052 62-63 21.88340033685183 28.231393380251703 27.993358749745877 21.89184753315059 64-65 21.857924877462896 28.193781962595004 27.950960267590645 21.99733289235145 66-67 21.941769031428382 28.230971358801572 27.79236146138017 22.034898148389875 68-69 21.9074379757993 28.24893160152412 27.80619953739961 22.037430885276965 70-71 21.90062273185575 28.042030161853898 27.895881237676466 22.161465868613885 72-73 21.927135310665058 28.036082972608895 27.84254194333325 22.1942397733928 74-75 21.851678185721415 28.124388704939303 27.78516098402791 22.238772125311367 76-77 22.047834744071956 28.043702159198958 27.726188315929633 22.182274780799453 78-79 22.011371194357213 28.054648112983205 27.68702739650937 22.246953296150206 80-81 21.984512036349145 28.048294296820604 27.70514274528254 22.26205092154771 82-83 22.037401865061355 27.99619740968513 27.758692761879978 22.207707963373544 84-85 22.098229587216373 28.00397688350188 27.747128647339338 22.150664881942415 86-87 22.007017827565516 28.014790524951266 27.796367446307972 22.18182420117525 88-89 22.04352307307673 28.024604752909493 27.765715778454116 22.16615639555966 90-91 22.073352196612696 27.990450286724844 27.836092445047285 22.10010507161518 92-93 22.12169468423951 27.887133702853234 27.85156903095561 22.13960258195165 94-95 21.992142445828783 27.8882333718175 27.905705479901897 22.21391870245182 96-97 21.940184021786738 27.907306593659907 28.007250577186717 22.145258807366634 98-99 22.147634251801104 28.479838140308722 28.106833339087416 21.265694268802754 100-101 25.916616131130688 35.63089845069693 28.960692342314665 9.491793075857709 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3056.0 1 2714.0 2 3454.5 3 4790.0 4 6373.5 5 9844.5 6 12805.5 7 15240.0 8 16903.0 9 16825.0 10 15703.5 11 14704.0 12 16321.0 13 21467.0 14 33403.0 15 49688.5 16 62555.0 17 69002.5 18 70313.0 19 68968.0 20 66304.0 21 64595.5 22 66657.5 23 75376.0 24 91586.5 25 114292.0 26 142157.0 27 170381.0 28 198511.5 29 227471.0 30 254120.0 31 280877.0 32 309762.0 33 338928.5 34 366331.5 35 390828.5 36 419335.5 37 446122.0 38 465183.0 39 480606.0 40 494284.5 41 507314.5 42 514675.5 43 518889.0 44 524140.0 45 528100.0 46 527303.0 47 523034.5 48 516822.0 49 505800.0 50 492309.5 51 475199.5 52 450570.0 53 421971.0 54 393645.5 55 363789.5 56 332072.0 57 299416.0 58 264478.0 59 227232.5 60 189793.5 61 154967.5 62 123555.0 63 95621.5 64 71631.0 65 53492.0 66 40038.5 67 30284.0 68 23121.5 69 16887.5 70 11871.5 71 8450.5 72 6012.5 73 4181.0 74 2867.0 75 1913.0 76 1221.0 77 766.0 78 510.0 79 351.0 80 250.0 81 166.5 82 119.5 83 86.0 84 61.5 85 49.5 86 42.5 87 34.5 88 24.0 89 15.0 90 7.0 91 3.0 92 3.5 93 4.0 94 3.0 95 2.0 96 1.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003968631493079174 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.54499410210663E-4 20-21 0.001417980090529711 22-23 0.002618370343727458 24-25 3.16965587006598E-5 26-27 0.008021989446248488 28-29 1.5067776046217153E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03468052945795645 38-39 0.015281362063911518 40-41 0.02445095944961958 42-43 0.0013144989729655212 44-45 0.00557459378880751 46-47 0.004517111169419267 48-49 0.0025651015349864373 50-51 0.002372449269090776 52-53 1.7287117894729836E-4 54-55 0.002594468975863241 56-57 0.014292440324988782 58-59 0.009947167461765353 60-61 0.0034621262275035987 62-63 0.0010814475402521136 64-65 0.0031777606715471625 66-67 2.4155538628097334E-4 68-69 5.5489918610397E-4 70-71 2.571612502951402E-4 72-73 0.0 74-75 0.0 76-77 0.006229639338491408 78-79 2.9562292183975465E-4 80-81 1.524575702958988E-5 82-83 9.795697327594567E-5 84-85 0.0019869381821178388 86-87 0.005395425824831691 88-89 0.08068732191698076 90-91 0.0030248136643546207 92-93 0.0015011381026406806 94-95 0.0 96-97 0.017389445767271233 98-99 2.4355912461684342E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 217.0 20-21 1002.0 22-23 1978.0 24-25 4221.0 26-27 5309.0 28-29 10142.0 30-31 30234.0 32-33 40143.0 34-35 56465.0 36-37 85897.0 38-39 91516.0 40-41 98565.0 42-43 111801.0 44-45 131496.0 46-47 131672.0 48-49 119498.0 50-51 109989.0 52-53 100286.0 54-55 109424.0 56-57 115175.0 58-59 119129.0 60-61 118291.0 62-63 113543.0 64-65 122121.0 66-67 130339.0 68-69 132954.0 70-71 132132.0 72-73 126633.0 74-75 128766.0 76-77 131612.0 78-79 139390.0 80-81 141463.0 82-83 136506.0 84-85 136113.0 86-87 143752.0 88-89 151750.0 90-91 163680.0 92-93 168333.0 94-95 206478.0 96-97 264807.0 98-99 1013588.0 100-101 7347589.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.28789075005325 #Duplication Level Percentage of deduplicated Percentage of total 1 90.12193099679868 76.86309405038804 2 6.922550559943384 11.808194717363426 3 1.6151969097158123 4.132702127269974 4 0.5925049680288419 2.0213399592843064 5 0.27413674947745353 1.169027257000389 6 0.1544498272841396 0.7903619997464577 7 0.08942069356818728 0.5338551640686283 8 0.05861315773802109 0.39991940749407845 9 0.03646562141569 0.27990683418907536 >10 0.1315904807534429 1.7639542298809363 >50 0.002602124193174169 0.1457870355590792 >100 5.06809226924276E-4 0.07151174307363617 >500 3.110185627238705E-5 0.020345474681992787 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.752852087519969E-5 0.0 0.0 0.0 3 0.0 4.752852087519969E-5 0.0 7.921420145866615E-6 0.0 4 0.0 1.1089988204213261E-4 0.0 7.921420145866615E-6 0.0 5 0.0 1.1089988204213261E-4 0.0 1.584284029173323E-5 0.0 6 1.584284029173323E-5 1.1882130218799923E-4 0.0 1.584284029173323E-5 0.0 7 1.584284029173323E-5 1.1882130218799923E-4 0.0 1.584284029173323E-5 0.0 8 1.584284029173323E-5 1.2674272233386584E-4 0.0 1.584284029173323E-5 0.0 9 1.584284029173323E-5 2.2972118423013183E-4 0.0 1.584284029173323E-5 0.0 10-11 1.584284029173323E-5 2.2972118423013183E-4 0.0 3.168568058346646E-5 7.921420145866615E-6 12-13 1.584284029173323E-5 2.2972118423013183E-4 0.0 3.564639065639977E-5 7.921420145866615E-6 14-15 1.584284029173323E-5 3.08935385688798E-4 0.0 4.752852087519969E-5 7.921420145866615E-6 16-17 4.356781080226638E-5 3.08935385688798E-4 0.0 7.525349138573284E-5 7.921420145866615E-6 18-19 4.752852087519969E-5 3.2081751590759793E-4 0.0 1.0693917196919931E-4 7.921420145866615E-6 20-21 5.5449941021066304E-5 3.4854248641813106E-4 0.0 2.0595692379253198E-4 7.921420145866615E-6 22-23 5.941065109399961E-5 3.881495871474641E-4 0.0 5.901458008670628E-4 7.921420145866615E-6 24-25 7.129278131279954E-5 4.554816583873303E-4 0.0 0.0014892269874229236 1.584284029173323E-5 26-27 8.317491153159946E-5 4.832066288978635E-4 0.0 0.0041389420262153065 1.584284029173323E-5 28-29 8.713562160453276E-5 4.911280490437301E-4 0.0 0.02271467226827252 1.584284029173323E-5 30-31 9.505704175039937E-5 5.465779900647964E-4 0.0 0.03359870354869325 1.584284029173323E-5 32-33 1.0297846189626599E-4 5.54499410210663E-4 0.0 0.04105275990595373 1.584284029173323E-5 34-35 1.0297846189626599E-4 6.257921915234626E-4 0.0 0.051089199230766734 1.584284029173323E-5 36-37 1.0297846189626599E-4 6.970849728362621E-4 0.0 0.06459125986939637 1.584284029173323E-5 38-39 1.0297846189626599E-4 7.20849233273862E-4 0.0 0.08841889166816316 1.584284029173323E-5 40-41 1.0297846189626599E-4 7.683777541490617E-4 0.0 0.13283033371596434 1.584284029173323E-5 42-43 1.0297846189626599E-4 8.000634347325281E-4 0.0 0.15266556976121434 1.584284029173323E-5 44-45 1.1089988204213261E-4 9.426489973581272E-4 0.0 0.1803667760113099 1.584284029173323E-5 46-47 1.1882130218799923E-4 0.0010456274592543931 0.0 0.21227821706893354 1.584284029173323E-5 48-49 1.2278201226093255E-4 0.0010495881693273264 0.0 0.23875952461656563 1.584284029173323E-5 50-51 1.3862485255266576E-4 0.0011010774002754595 0.0 0.263026795233428 1.584284029173323E-5 52-53 1.4654627269853238E-4 0.0011010774002754595 0.0 0.29590068883877446 1.584284029173323E-5 54-55 1.5050698277146567E-4 0.0011129595304942594 0.0 0.3641595662357071 1.584284029173323E-5 56-57 1.5050698277146567E-4 0.0011248416607130593 0.0 0.43546422967872545 1.584284029173323E-5 58-59 1.5050698277146567E-4 0.0011367237909318591 0.0 0.4927559008837057 1.584284029173323E-5 60-61 1.5446769284439897E-4 0.0011604880513694591 0.0 0.528065631183906 1.584284029173323E-5 62-63 1.663498230631989E-4 0.001172370181588259 0.0 0.5484791308998044 1.584284029173323E-5 64-65 1.663498230631989E-4 0.0013822878154537243 0.0 0.562698080061635 1.584284029173323E-5 66-67 1.663498230631989E-4 0.001390209235599591 0.0 0.5711027068363994 1.584284029173323E-5 68-69 1.663498230631989E-4 0.001429816336328924 0.0 0.5790756162132142 1.584284029173323E-5 70-71 1.663498230631989E-4 0.0014496198866935906 0.0 0.5865930439316416 1.584284029173323E-5 72-73 1.663498230631989E-4 0.0014575413068394572 0.0 0.5925222269108228 1.584284029173323E-5 74-75 1.663498230631989E-4 0.0014892269874229236 0.0 0.5977543249171677 1.584284029173323E-5 76-77 1.663498230631989E-4 0.00154467692844399 0.0 0.6026220375968028 1.584284029173323E-5 78-79 1.663498230631989E-4 0.0015842840291733229 0.0 0.6070382293281233 1.584284029173323E-5 80-81 1.663498230631989E-4 0.0015882447392462562 0.0 0.6095810051949465 1.584284029173323E-5 82-83 1.663498230631989E-4 0.0016001268694650563 0.0 0.61139501040835 1.584284029173323E-5 84-85 1.663498230631989E-4 0.0016001268694650563 0.0 0.6129951372778151 1.584284029173323E-5 86-87 1.703105331361322E-4 0.0016080482896109229 0.0 0.613351601184379 1.584284029173323E-5 88-89 1.7427124320906553E-4 0.0017031053313613222 0.0 0.6133872475750355 1.584284029173323E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14040 0.0 48.326233 1 GTATCAA 24510 0.0 33.77925 1 TCAACGC 29750 0.0 27.012457 4 ATCAACG 30215 0.0 26.652151 3 CAACGCA 30535 0.0 26.30431 5 AACGCAG 31360 0.0 25.679043 6 TATCAAC 32340 0.0 25.277218 2 ACGCAGA 36385 0.0 22.15561 7 CGCAGAG 36705 0.0 21.951052 8 GTACATG 31550 0.0 18.75932 1 TACATGG 31230 0.0 18.402023 2 AGAGTAC 39740 0.0 17.883795 10-11 GCAGAGT 44810 0.0 17.868574 9 GAGTACT 26615 0.0 17.621328 12-13 ACATGGG 32080 0.0 17.470125 3 CAGAGTA 43525 0.0 16.732481 10-11 AGTACTT 29580 0.0 15.840876 12-13 CATGGGG 22570 0.0 15.744394 4 GTACTTT 30155 0.0 15.588357 14-15 GTGGTAT 7480 0.0 14.045564 1 >>END_MODULE