##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139828_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9600822 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.955976165374175 31.0 31.0 34.0 30.0 34.0 2 32.12080663509854 33.0 31.0 34.0 30.0 34.0 3 32.153410822531654 33.0 31.0 34.0 30.0 34.0 4 35.856161691155194 37.0 35.0 37.0 35.0 37.0 5 35.68939315821083 37.0 35.0 37.0 33.0 37.0 6 35.702131650810735 37.0 35.0 37.0 33.0 37.0 7 35.60595832315192 37.0 35.0 37.0 33.0 37.0 8 35.59127468460513 37.0 35.0 37.0 33.0 37.0 9 37.17190965523577 39.0 37.0 39.0 33.0 39.0 10-11 37.05887954177257 39.0 37.0 39.0 33.0 39.0 12-13 37.01423346875924 39.0 37.0 39.0 33.0 39.0 14-15 38.17809396945387 40.0 37.0 41.0 33.0 41.0 16-17 38.16206877911079 40.0 37.0 41.0 33.0 41.0 18-19 38.185668581294394 40.0 37.5 41.0 33.0 41.0 20-21 38.16186672195297 40.0 37.0 41.0 33.0 41.0 22-23 38.09883044037556 40.0 37.0 41.0 33.0 41.0 24-25 38.0182436707315 40.0 37.0 41.0 33.0 41.0 26-27 37.85008961595424 40.0 37.0 41.0 33.0 41.0 28-29 37.74796200414278 39.5 37.0 41.0 32.0 41.0 30-31 37.60422162151024 39.0 37.0 41.0 32.0 41.0 32-33 37.780717475698 39.5 37.0 41.0 33.0 41.0 34-35 37.73999867848363 40.0 37.0 41.0 33.0 41.0 36-37 37.65534937399853 40.0 37.0 41.0 32.5 41.0 38-39 37.557016216765916 39.0 36.0 41.0 32.0 41.0 40-41 37.46638915980815 39.0 36.0 41.0 32.0 41.0 42-43 37.4262871430676 39.0 36.0 41.0 32.0 41.0 44-45 37.44944114435518 39.0 36.5 41.0 32.0 41.0 46-47 37.55215273334619 40.0 37.0 41.0 32.0 41.0 48-49 37.502111307006494 39.5 36.0 41.0 32.0 41.0 50-51 37.40114550070385 39.0 36.0 41.0 32.0 41.0 52-53 37.31160828348015 39.0 36.0 41.0 31.0 41.0 54-55 37.18907924705746 39.0 36.0 40.5 31.0 41.0 56-57 37.06507625834161 39.0 35.5 40.0 31.0 41.0 58-59 36.92874232086427 39.0 35.0 40.0 31.0 41.0 60-61 36.71293027388157 38.5 35.0 40.0 31.0 41.0 62-63 36.50318589057859 38.0 35.0 40.0 30.0 41.0 64-65 36.30303152230759 38.0 34.5 40.0 30.0 41.0 66-67 36.05103124977782 37.5 34.0 40.0 30.0 41.0 68-69 35.77193582744239 37.0 34.0 39.5 29.5 41.0 70-71 35.47547332349262 36.5 34.0 39.0 29.0 41.0 72-73 35.16672459051972 36.0 34.0 39.0 29.0 40.0 74-75 34.82051945872436 35.5 33.5 38.5 29.0 40.0 76-77 33.76094044283316 35.0 32.0 37.0 27.5 39.0 78-79 34.144811384704155 35.0 33.0 37.0 29.0 39.0 80-81 34.01919832365907 35.0 33.0 37.0 29.0 39.0 82-83 33.76892018119649 35.0 33.0 36.0 29.0 38.5 84-85 33.522771955985675 35.0 33.0 36.0 29.0 37.0 86-87 33.29625681503262 35.0 33.0 35.5 29.0 37.0 88-89 33.0736993102812 34.5 32.0 35.0 29.0 36.5 90-91 32.93505383479594 34.0 32.0 35.0 29.0 36.0 92-93 32.843294445345904 34.0 32.0 35.0 28.5 36.0 94-95 32.78667558989345 34.0 32.0 35.0 29.0 36.0 96-97 32.77824546990231 34.0 32.0 35.0 29.0 35.0 98-99 32.87071341865664 34.0 32.0 35.0 29.0 35.0 100-101 32.24079712903807 33.5 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 4.0 19 8.0 20 47.0 21 343.0 22 1519.0 23 5234.0 24 13976.0 25 29983.0 26 54643.0 27 88734.0 28 130805.0 29 179686.0 30 236070.0 31 304090.0 32 387529.0 33 497929.0 34 655562.0 35 882436.0 36 1253799.0 37 1847235.0 38 2051885.0 39 946271.0 40 33033.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.09489834254799 22.35961903674696 15.378289002575926 24.167193618129115 2 13.81657260828172 22.960755883596757 41.2190300007708 22.00364150735072 3 16.713475158689537 27.926025500733164 31.885540633916555 23.474958706660743 4 11.991150341085378 19.798065207333288 39.92752912198559 28.283255329595736 5 12.32577922242275 38.582877443501964 36.618045477569055 12.47329785650623 6 28.037539706239706 39.99533998186197 19.438181380529855 12.528938931368474 7 24.572617279293095 33.44658753662838 24.95234522130972 17.02844996276881 8 23.259489995699326 37.7606040150108 22.165729368352977 16.814176620936898 9 24.8977222991948 16.78598978295817 22.171570309292264 36.144717608554764 10-11 23.141955970020067 27.514904452972882 30.21419415962508 19.12894541738197 12-13 24.09785849586629 25.14983092072741 30.084835444298413 20.66747513910788 14-15 21.362696860747967 26.533847830946144 27.566873961417055 24.536581346888838 16-17 20.91813076005367 29.519852570956946 28.24198802977495 21.320028639214435 18-19 20.971936402058894 28.77866465571947 29.797352455385802 20.45204648683584 20-21 21.703925686120105 27.99823131632564 29.61739455603748 20.680448441516777 22-23 21.404249483207494 27.971409122206175 29.466561583222955 21.15777981136338 24-25 21.255632346745934 28.11314573553606 29.46184550393294 21.169376413785066 26-27 21.271699378887813 28.197581068652795 29.368231465601152 21.16248808685824 28-29 21.242943445553262 28.277129493471808 29.398715118283924 21.081211942691006 30-31 21.483610433073487 28.119853089575724 29.333219149737772 21.063317327613014 32-33 21.270540743534138 28.321916080047522 29.24818769076595 21.15935548565239 34-35 21.39266883215007 28.351590494738353 29.230837754036937 21.02490291907464 36-37 21.35830354407594 28.307959267874374 29.204768069365716 21.128969118683973 38-39 21.26152680936662 28.34890798452234 29.23960552924263 21.14995967686841 40-41 21.491510167074377 28.276257431573438 29.09810627757336 21.134126123778824 42-43 21.374797465857604 28.409343404113574 28.903886598267132 21.31197253176169 44-45 21.46607935644098 28.468980236910234 28.7284692909696 21.336471115679185 46-47 21.516602892247406 28.460353650509713 28.52269583479795 21.50034762244493 48-49 21.45495883945227 28.56561237895288 28.516261516106876 21.46316726548797 50-51 21.491166531564605 28.62951920044795 28.377088559357304 21.50222570863014 52-53 21.59354780693978 28.522408002095467 28.34460436105182 21.539439829912922 54-55 21.583734746910046 28.461641276602112 28.359094387805566 21.595529588682272 56-57 21.591543063811777 28.570176127839108 28.29219573509598 21.54608507325313 58-59 21.601129798554012 28.59027054129933 28.29865974073443 21.509939919412233 60-61 21.67821040381889 28.542159803917443 28.281624035308507 21.49800575695516 62-63 21.609998991506206 28.598352234861146 28.27425764233304 21.517391131299608 64-65 21.60250714658002 28.57694980528685 28.234520098743065 21.586022949390067 66-67 21.662438689124418 28.547724134057024 28.14101955724915 21.648817619569403 68-69 21.596425518353243 28.548859976627934 28.204654166620717 21.65006033839811 70-71 21.624857629273183 28.374612137619398 28.271859863844924 21.728670369262492 72-73 21.654961336541962 28.417338252979874 28.205214555076196 21.722485855401967 74-75 21.52916517293374 28.468737381549015 28.21412293707226 21.787974508444986 76-77 21.63808250174659 28.416439870282893 28.1712912274116 21.77418640055891 78-79 21.66684767012872 28.386621016800824 28.15094658204689 21.79558473102357 80-81 21.653589112676602 28.37884842194745 28.16401677476274 21.80354569061321 82-83 21.601830013007778 28.38397461238533 28.268146613257052 21.746048761349837 84-85 21.720582129076856 28.31156036521935 28.241505326115522 21.726352179588268 86-87 21.62658251930676 28.31121582736888 28.27199511496462 21.79020653835974 88-89 21.63777408459536 28.331347612133722 28.224964853340712 21.805913449930205 90-91 21.701185787719663 28.288792204473324 28.2657241821621 21.744297825644914 92-93 21.67601201827278 28.18985137929196 28.325078763702532 21.80905783873273 94-95 21.509923215024674 28.229904093944697 28.389568737759436 21.870603953271196 96-97 21.457374576099813 28.286137510211752 28.476175367359485 21.780312546328947 98-99 21.61471007239894 28.893539855078643 28.552654036109054 20.93909603641336 100-101 22.125568727193013 31.64537747067567 25.814502640875347 20.41455116125597 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2280.0 1 2014.5 2 2692.5 3 3834.5 4 5159.5 5 7968.0 6 10310.5 7 12143.5 8 13273.5 9 13135.0 10 12329.5 11 11676.0 12 13122.5 13 17329.5 14 26786.5 15 39702.0 16 49741.5 17 54670.0 18 55852.0 19 54888.5 20 53096.0 21 52365.0 22 54787.0 23 62459.5 24 75297.5 25 93693.0 26 116428.0 27 139517.0 28 163591.5 29 187957.0 30 210120.0 31 232618.5 32 255823.5 33 278034.0 34 297959.5 35 315833.0 36 336362.5 37 355891.0 38 370761.5 39 381641.5 40 390020.0 41 396295.5 42 398653.5 43 399665.5 44 401433.5 45 401610.0 46 397508.0 47 392191.0 48 385033.0 49 374100.5 50 361157.0 51 344036.0 52 323556.5 53 301638.5 54 278062.5 55 254153.5 56 230758.0 57 206540.5 58 180945.5 59 155242.5 60 129107.0 61 104246.5 62 82409.5 63 63729.0 64 47834.5 65 35900.5 66 27254.5 67 20634.0 68 15710.5 69 11345.0 70 8007.0 71 5843.5 72 4140.0 73 2889.5 74 2001.0 75 1355.0 76 941.5 77 632.5 78 427.0 79 300.5 80 222.0 81 166.0 82 119.5 83 82.5 84 60.0 85 47.5 86 39.5 87 34.5 88 27.0 89 21.0 90 15.0 91 10.0 92 7.0 93 3.5 94 1.5 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.0415774815948051E-5 2 0.004187141476011116 3 0.0 4 0.0 5 1.0415774815948051E-5 6 1.0415774815948051E-5 7 1.0415774815948051E-5 8 1.0415774815948051E-5 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 4.11423105229948E-4 20-21 5.624757432335731E-4 22-23 2.239728682392618E-4 24-25 1.979777097938531E-4 26-27 0.0026842125562772526 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.033306125413449884 38-39 0.016722968923397478 40-41 0.021807792054776547 42-43 0.010760345562045838 44-45 0.004317362562459344 46-47 0.005506314127339053 48-49 0.00966193857603642 50-51 0.007417259151662521 52-53 0.011575778722457755 54-55 0.004007906642265262 56-57 0.0175079663564323 58-59 0.014032649688722329 60-61 0.014293520825168392 62-63 0.0053803391038018825 64-65 0.007167843493494411 66-67 4.956429314892969E-4 68-69 5.699867527644047E-4 70-71 0.001261248643687093 72-73 1.1437281917244275E-4 74-75 0.003570676982985113 76-77 0.004451006764943767 78-79 0.0035803052560334416 80-81 5.763660948757569E-4 82-83 0.003734053500076619 84-85 0.004962273265003958 86-87 0.0018429260789035837 88-89 0.07481042197081368 90-91 0.0012908063406147864 92-93 0.0 94-95 5.590044282215652E-4 96-97 0.012125471024931023 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 263.0 20-21 813.0 22-23 1706.0 24-25 3762.0 26-27 5222.0 28-29 8856.0 30-31 21924.0 32-33 29312.0 34-35 42045.0 36-37 63031.0 38-39 70298.0 40-41 72671.0 42-43 84937.0 44-45 98585.0 46-47 100754.0 48-49 90878.0 50-51 83017.0 52-53 80972.0 54-55 88148.0 56-57 93204.0 58-59 92777.0 60-61 91371.0 62-63 87704.0 64-65 92538.0 66-67 100286.0 68-69 102024.0 70-71 100489.0 72-73 97300.0 74-75 98662.0 76-77 101561.0 78-79 107621.0 80-81 110300.0 82-83 106597.0 84-85 107854.0 86-87 114575.0 88-89 121396.0 90-91 132696.0 92-93 137709.0 94-95 161474.0 96-97 222496.0 98-99 784028.0 100-101 5488966.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.2849664659509 #Duplication Level Percentage of deduplicated Percentage of total 1 89.9495170794723 76.71341547751274 2 6.881529391076871 11.737820067048931 3 1.7683088837108094 4.524304915461584 4 0.6614970386416219 2.256630110315062 5 0.28102796409787184 1.1983730247040727 6 0.15472609008644517 0.7917485642658105 7 0.09434140968271194 0.5632132772798436 8 0.05790723834587118 0.39508935043707594 9 0.03667453527423439 0.28150078599156725 >10 0.11308471013303815 1.4385914933694428 >50 0.0011546732162423493 0.060517147232483144 >100 2.309862619648511E-4 0.038795786381443556 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0415774815948051E-5 2 0.0 0.0 0.0 1.0415774815948051E-5 1.0415774815948051E-5 3 0.0 0.0 0.0 1.0415774815948051E-5 1.0415774815948051E-5 4 0.0 3.1247324447844155E-5 0.0 3.1247324447844155E-5 2.0831549631896102E-5 5 0.0 3.1247324447844155E-5 0.0 3.1247324447844155E-5 2.0831549631896102E-5 6 0.0 3.1247324447844155E-5 0.0 3.1247324447844155E-5 3.1247324447844155E-5 7 0.0 3.1247324447844155E-5 0.0 3.1247324447844155E-5 3.1247324447844155E-5 8 0.0 4.1663099263792204E-5 0.0 3.1247324447844155E-5 3.1247324447844155E-5 9 0.0 8.332619852758441E-5 0.0 7.291042371163635E-5 3.1247324447844155E-5 10-11 1.0415774815948051E-5 8.332619852758441E-5 0.0 9.374197334353246E-5 3.1247324447844155E-5 12-13 1.0415774815948051E-5 8.332619852758441E-5 0.0 9.374197334353246E-5 3.645521185581818E-5 14-15 1.0415774815948051E-5 1.7186028446314284E-4 0.0 1.5623662223922076E-4 4.6870986671766225E-5 16-17 1.5623662223922077E-5 1.7706817187111687E-4 0.0 1.6665239705516882E-4 7.291042371163635E-5 18-19 2.0831549631896102E-5 1.9269183409503896E-4 0.0 1.6665239705516882E-4 7.291042371163635E-5 20-21 2.0831549631896102E-5 2.0831549631896101E-4 0.0 1.6665239705516882E-4 7.291042371163635E-5 22-23 2.0831549631896102E-5 2.447707081747792E-4 0.0 1.7186028446314284E-4 1.0936563556745454E-4 24-25 2.0831549631896102E-5 2.603943703987013E-4 0.0 2.0310760891098699E-4 1.458208474232727E-4 26-27 2.0831549631896102E-5 2.7081014521464935E-4 0.0 2.9164169484654546E-4 1.614445096471948E-4 28-29 2.0831549631896102E-5 2.7081014521464935E-4 0.0 9.530433956592467E-4 1.6665239705516882E-4 30-31 2.0831549631896102E-5 2.968495822545194E-4 0.0 0.0023383414461803373 1.6665239705516882E-4 32-33 2.0831549631896102E-5 3.0205746966249346E-4 0.0 0.005681805162099662 1.7706817187111687E-4 34-35 2.6039437039870127E-5 3.3330479411033763E-4 0.0 0.010139756783325429 1.7706817187111687E-4 36-37 3.1247324447844155E-5 3.645521185581818E-4 0.0 0.01598821434248026 1.7706817187111687E-4 38-39 3.645521185581818E-5 3.853836681900779E-4 0.0 0.023810461229257243 1.7706817187111687E-4 40-41 5.2078874079740254E-5 4.0621521782197397E-4 0.0 0.0325805436242855 1.874839466870649E-4 42-43 5.728676148771428E-5 4.270467674538701E-4 0.0 0.041043360662243296 1.9789972150301296E-4 44-45 6.249464889568831E-5 4.895414163495584E-4 0.0 0.050433181658820464 1.9789972150301296E-4 46-47 6.249464889568831E-5 5.312045156133506E-4 0.0 0.06096873788515192 2.0310760891098699E-4 48-49 6.249464889568831E-5 5.312045156133506E-4 0.0 0.07112411833070127 2.3956282076680518E-4 50-51 6.249464889568831E-5 5.624518400611948E-4 0.0 0.08067538383692563 2.3956282076680518E-4 52-53 6.249464889568831E-5 5.624518400611948E-4 0.0 0.08954962398011337 2.656022578066753E-4 54-55 6.249464889568831E-5 5.832833896930909E-4 0.0 0.09897590018854635 2.916416948465454E-4 56-57 6.249464889568831E-5 6.041149393249869E-4 0.0 0.10735539102797656 2.916416948465454E-4 58-59 6.249464889568831E-5 6.041149393249869E-4 0.0 0.11390691338720789 2.916416948465454E-4 60-61 6.249464889568831E-5 6.14530714140935E-4 0.0 0.12075007744128576 3.228890192943896E-4 62-63 6.249464889568831E-5 6.353622637728312E-4 0.0 0.12734326289978087 3.3330479411033763E-4 64-65 6.249464889568831E-5 7.395200119323116E-4 0.0 0.13407706131829128 3.3330479411033763E-4 66-67 6.249464889568831E-5 7.655594489721818E-4 0.0 0.14077440452494588 3.3330479411033763E-4 68-69 6.249464889568831E-5 7.863909986040778E-4 0.0 0.14815398098204507 3.3330479411033763E-4 70-71 6.249464889568831E-5 7.968067734200259E-4 0.0 0.15518462898281002 3.437205689262857E-4 72-73 6.249464889568831E-5 8.07222548235974E-4 0.0 0.1609237209063974 3.5413634374223375E-4 74-75 6.249464889568831E-5 8.332619852758441E-4 0.0 0.16620972662549102 3.5413634374223375E-4 76-77 6.249464889568831E-5 8.749250845396363E-4 0.0 0.17082391486895604 3.5413634374223375E-4 78-79 6.249464889568831E-5 8.853408593555844E-4 0.0 0.17505792733163889 3.5413634374223375E-4 80-81 6.249464889568831E-5 9.009645215795063E-4 0.0 0.17708900342074876 3.5934423115020775E-4 82-83 6.249464889568831E-5 9.061724089874804E-4 0.0 0.17826598597495089 3.957994430060259E-4 84-85 6.249464889568831E-5 9.165881838034285E-4 0.0 0.17945859219137694 3.957994430060259E-4 86-87 6.249464889568831E-5 9.270039586193765E-4 0.0 0.17985959952179095 3.957994430060259E-4 88-89 6.249464889568831E-5 0.001031161706778857 0.0 0.17988043107142285 3.957994430060259E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11230 0.0 45.467594 1 GTATCAA 19335 0.0 31.949503 1 TCAACGC 23195 0.0 26.018047 4 ATCAACG 23370 0.0 25.787401 3 CAACGCA 23700 0.0 25.393019 5 AACGCAG 24270 0.0 24.848377 6 TATCAAC 25265 0.0 24.019867 2 ACGCAGA 28180 0.0 21.445196 7 CGCAGAG 28325 0.0 21.32064 8 GTACATG 23525 0.0 18.929272 1 TACATGG 23475 0.0 18.399075 2 AGAGTAC 30640 0.0 17.578976 10-11 ACATGGG 23975 0.0 17.560753 3 GCAGAGT 34045 0.0 17.492641 9 GAGTACT 20515 0.0 17.268682 12-13 CAGAGTA 33555 0.0 16.432255 10-11 CATGGGG 17105 0.0 15.707814 4 AGTACTT 23155 0.0 15.335957 12-13 GTGGTAT 6245 0.0 15.280033 1 GTACTTT 23845 0.0 14.928372 14-15 >>END_MODULE