##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139826_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10171184 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.885667391328287 31.0 31.0 34.0 30.0 34.0 2 32.04481208874011 31.0 31.0 34.0 30.0 34.0 3 32.07618237955385 33.0 31.0 34.0 30.0 34.0 4 35.7908767553512 37.0 35.0 37.0 35.0 37.0 5 35.61500352368023 37.0 35.0 37.0 33.0 37.0 6 35.625194470968175 37.0 35.0 37.0 33.0 37.0 7 35.524293140306966 37.0 35.0 37.0 33.0 37.0 8 35.50790576593639 37.0 35.0 37.0 33.0 37.0 9 37.071688507454 39.0 37.0 39.0 33.0 39.0 10-11 36.95576685074225 39.0 37.0 39.0 33.0 39.0 12-13 36.9074866800168 39.0 37.0 39.0 33.0 39.0 14-15 38.04999953791024 40.0 37.0 41.0 33.0 41.0 16-17 38.031319559256815 40.0 37.0 41.0 33.0 41.0 18-19 38.050636828514754 40.0 37.0 41.0 33.0 41.0 20-21 38.02777981177861 40.0 37.0 41.0 33.0 41.0 22-23 37.96066986671279 40.0 37.0 41.0 33.0 41.0 24-25 37.87926713178986 40.0 37.0 41.0 33.0 41.0 26-27 37.70056606243844 39.0 37.0 41.0 32.0 41.0 28-29 37.59710965137046 39.0 37.0 41.0 32.0 41.0 30-31 37.44940061547342 39.0 36.0 40.5 32.0 41.0 32-33 37.630725777988474 39.0 37.0 41.0 32.0 41.0 34-35 37.587916122721346 39.0 36.5 41.0 32.0 41.0 36-37 37.50081520091864 39.0 36.0 41.0 32.0 41.0 38-39 37.39513807371536 39.0 36.0 41.0 31.0 41.0 40-41 37.303907967871844 39.0 36.0 41.0 31.0 41.0 42-43 37.25859714551633 39.0 36.0 40.0 31.0 41.0 44-45 37.28240803193199 39.0 36.0 40.5 31.5 41.0 46-47 37.389539789904305 39.0 36.0 41.0 31.5 41.0 48-49 37.336296014042276 39.0 36.0 41.0 31.0 41.0 50-51 37.22774106378927 39.0 36.0 41.0 31.0 41.0 52-53 37.13307976992384 39.0 36.0 40.5 31.0 41.0 54-55 37.007433968837745 39.0 35.0 40.0 31.0 41.0 56-57 36.88049404729829 39.0 35.0 40.0 31.0 41.0 58-59 36.74035814226458 38.5 35.0 40.0 31.0 41.0 60-61 36.517851309579584 38.0 35.0 40.0 30.0 41.0 62-63 36.3062231030309 38.0 34.5 40.0 30.0 41.0 64-65 36.10005047445777 38.0 34.0 40.0 30.0 41.0 66-67 35.84232450846098 37.0 34.0 40.0 29.0 41.0 68-69 35.560567164016334 37.0 34.0 39.5 29.0 41.0 70-71 35.259727807023026 36.0 34.0 39.0 29.0 40.5 72-73 34.95138174787909 36.0 33.5 39.0 29.0 40.0 74-75 34.60613349355085 35.0 33.0 38.0 29.0 40.0 76-77 33.555072337667866 34.5 31.5 37.0 27.5 39.0 78-79 33.95389202031349 35.0 33.0 37.0 28.5 39.0 80-81 33.84221203150693 35.0 33.0 36.5 29.0 39.0 82-83 33.602532967091186 35.0 33.0 36.0 29.0 38.5 84-85 33.364642737251785 35.0 32.5 36.0 28.5 37.0 86-87 33.14529111708704 35.0 32.0 35.0 28.0 37.0 88-89 32.92800908357608 34.0 32.0 35.0 28.0 36.5 90-91 32.797304083571234 34.0 32.0 35.0 27.5 36.0 92-93 32.71081052662994 34.0 32.0 35.0 27.5 36.0 94-95 32.66057930679692 34.0 32.0 35.0 28.0 35.5 96-97 32.66000807587734 34.0 32.0 35.0 28.5 35.0 98-99 32.76387623124904 34.0 32.0 35.0 29.0 35.0 100-101 32.135816806203884 33.5 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 2.0 19 11.0 20 81.0 21 419.0 22 1867.0 23 6314.0 24 16574.0 25 35796.0 26 65065.0 27 105044.0 28 153175.0 29 208091.0 30 272111.0 31 346253.0 32 434887.0 33 553123.0 34 720195.0 35 954889.0 36 1341447.0 37 1939352.0 38 2064107.0 39 921274.0 40 31106.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.85355765857741 22.412769250856144 15.368436948933379 24.36523614163307 2 13.815555509017049 23.081385328119577 40.94890770027773 22.15415146258565 3 16.7514912718126 27.91501952968307 31.870910997185774 23.46257820131855 4 12.019269339734686 19.839853452656055 39.81276909354899 28.328108114060267 5 12.360391116746204 38.51494953930138 36.60956645849357 12.51509288545885 6 28.11230236322536 40.042958617207205 19.32967685964584 12.515062159921598 7 24.576430826538974 33.31229677882142 24.919350588879325 17.191921805760273 8 23.277752127972516 37.65509502138591 22.1446883666641 16.922464483977482 9 24.894132285877436 16.720491930929576 22.0264818727102 36.35889391048279 10-11 23.202141461603684 27.406170215778218 30.184892928886153 19.20679539373194 12-13 24.119807487505877 25.040447601773796 30.011874723729314 20.827870186991014 14-15 21.379393982057547 26.436528923279727 27.414320692654858 24.76975640200787 16-17 21.03338706683509 29.43074768876465 28.10394050486158 21.43192473953868 18-19 21.065802483270442 28.699914616286755 29.619432662610652 20.614850237832158 20-21 21.832244224636607 27.898275851558722 29.42009804239668 20.84938188140799 22-23 21.549173094808197 27.905092881671127 29.25743632545843 21.288297698062244 24-25 21.385794191729556 28.039854538988067 29.263445519445376 21.310905749837 26-27 21.41920077277881 28.13497002722034 29.16316554155893 21.28266365844192 28-29 21.365716262423202 28.141353028277898 29.23923732876525 21.253693380533647 30-31 21.581038464929964 28.062211110822492 29.102689026315844 21.2540613979317 32-33 21.457980595215894 28.196858578931955 29.023477596861603 21.321683228990544 34-35 21.550292712502575 28.200262461817278 29.03730633599525 21.212138489684897 36-37 21.498056326799066 28.14691691274299 29.01215228126537 21.342874479192574 38-39 21.36653533290446 28.216101567096086 29.082674518819175 21.33468858118028 40-41 21.585854798468166 28.15859084135701 28.943182103845473 21.31237225632935 42-43 21.47107568415125 28.285011951218852 28.736767054933175 21.50714530969672 44-45 21.58514938278623 28.328425035900807 28.569854361773032 21.516571219539927 46-47 21.63253194444025 28.29195605555725 28.394126395422703 21.6813856045798 48-49 21.551573699529563 28.389875892513267 28.387132411755495 21.671417996201676 50-51 21.57298631899692 28.507687162130424 28.21864154571762 21.700684973155035 52-53 21.725728510212342 28.39455695640922 28.173822328794095 21.70589220458434 54-55 21.678204586492633 28.324415243614364 28.225637342830534 21.771742827062464 56-57 21.721169916419267 28.39728679970778 28.15555339506736 21.725989888805593 58-59 21.705958897253673 28.437594880165744 28.143655260204913 21.71279096237567 60-61 21.76074847637989 28.417751889428054 28.127983303764655 21.6935163304274 62-63 21.7270241439363 28.48701092507417 28.122210263631896 21.663754667357633 64-65 21.72875553950423 28.428154058448335 28.08060566622964 21.762484735817793 66-67 21.774620502350878 28.46270250687759 27.973600264508256 21.789076726263275 68-69 21.73596855295902 28.418747068131335 28.055207116377485 21.790077262532165 70-71 21.75695673761059 28.229088575697602 28.097509855739588 21.916444830952216 72-73 21.79586286409548 28.25581464865904 28.056622973729706 21.891699513515775 74-75 21.654010943037772 28.36720515060061 28.071789019944966 21.906994886416655 76-77 21.800006969858835 28.303809201478654 27.98352434508441 21.912659483578107 78-79 21.74049301618786 28.280076001908665 28.017361119191058 21.962069862712415 80-81 21.77607107563868 28.268614278931114 28.005412559866755 21.94990208556345 82-83 21.773925099974676 28.251058436183037 28.112927528938584 21.862088934903703 84-85 21.819021626408645 28.228293755699607 28.078215895360977 21.874468722530775 86-87 21.72502410132476 28.223602770302886 28.123699242489657 21.927673885882694 88-89 21.746502051112277 28.176037359754186 28.101531930227186 21.975928658906355 90-91 21.782841813763433 28.15551459847993 28.184062539818417 21.877581047938218 92-93 21.800383630274997 28.103807853461188 28.172019639843747 21.923788876420065 94-95 21.63772170294952 28.097894391710103 28.260884349115244 22.003499556225133 96-97 21.572888436516543 28.15429876390752 28.3325523738034 21.940260425772543 98-99 21.742981024845164 28.785212895511446 28.39233396846809 21.079472111175296 100-101 22.242004066936182 31.478561010134147 25.67489617694933 20.60453874598034 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2355.0 1 2098.5 2 2788.0 3 3904.0 4 5097.0 5 7646.5 6 9771.0 7 11626.0 8 12824.0 9 12832.5 10 12122.0 11 11444.5 12 12832.0 13 16959.0 14 26576.0 15 39482.0 16 49418.0 17 54574.0 18 55894.0 19 54947.5 20 53279.5 21 52597.5 22 54881.0 23 63084.0 24 77200.0 25 97028.5 26 122572.5 27 149027.0 28 175286.0 29 201517.5 30 224420.5 31 245765.0 32 268233.0 33 291683.5 34 314223.5 35 334887.0 36 357341.0 37 376127.0 38 387387.5 39 396922.0 40 406326.5 41 413943.5 42 416648.5 43 418414.0 44 420771.0 45 421416.0 46 419766.5 47 416299.5 48 410527.5 49 398835.5 50 385654.5 51 370836.5 52 350296.0 53 328267.0 54 305002.0 55 280464.0 56 256425.5 57 230780.0 58 203340.0 59 174930.0 60 146388.0 61 119155.5 62 95093.0 63 73877.0 64 55107.0 65 40983.0 66 30835.5 67 23322.0 68 17759.0 69 12919.0 70 9205.5 71 6628.5 72 4637.0 73 3199.0 74 2225.5 75 1525.0 76 1014.5 77 672.5 78 460.5 79 328.0 80 236.5 81 168.0 82 133.5 83 100.0 84 69.5 85 51.5 86 38.0 87 28.5 88 20.0 89 15.0 90 12.5 91 11.5 92 11.0 93 7.0 94 2.5 95 1.5 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0038835203453206632 3 0.0 4 0.0 5 9.831697076761171E-6 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 3.981837316088274E-4 20-21 5.850102767624626E-4 22-23 2.5566313510656043E-4 24-25 1.4753414382690587E-4 26-27 0.00218930836255773 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.032496133548047645 38-39 0.01686163010110103 40-41 0.021931858418804538 42-43 0.010595891415058862 44-45 0.004299467211053019 46-47 0.005493847125554091 48-49 0.009582833964133033 50-51 0.007388782073378426 52-53 0.011547016659068909 54-55 0.003753321716838779 56-57 0.01695750459217777 58-59 0.013462679296079305 60-61 0.013478270453527817 62-63 0.004968738354519482 64-65 0.006498757808045279 66-67 3.309245125191646E-4 68-69 6.11659932133978E-4 70-71 9.833442931524551E-4 72-73 9.058276239018199E-5 74-75 0.00305918451318432 76-77 0.0039870467485881795 78-79 0.0031445300867695342 80-81 5.363746285605697E-4 82-83 0.0034434265764830435 84-85 0.004812952913847945 86-87 0.0016186570965238001 88-89 0.07258700268071122 90-91 9.844020797227036E-4 92-93 7.075177010316032E-6 94-95 3.834362208468196E-4 96-97 0.011651683805869712 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 253.0 20-21 908.0 22-23 1881.0 24-25 3896.0 26-27 5454.0 28-29 9322.0 30-31 23390.0 32-33 31191.0 34-35 44622.0 36-37 67641.0 38-39 76304.0 40-41 79100.0 42-43 91188.0 44-45 106661.0 46-47 108022.0 48-49 98743.0 50-51 91022.0 52-53 89142.0 54-55 97223.0 56-57 102130.0 58-59 103052.0 60-61 100775.0 62-63 97318.0 64-65 102278.0 66-67 110414.0 68-69 111677.0 70-71 111016.0 72-73 107725.0 74-75 108091.0 76-77 111099.0 78-79 118881.0 80-81 121136.0 82-83 116595.0 84-85 117327.0 86-87 124895.0 88-89 132964.0 90-91 144454.0 92-93 150425.0 94-95 178041.0 96-97 240913.0 98-99 829121.0 100-101 5704894.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.47712447181516 #Duplication Level Percentage of deduplicated Percentage of total 1 90.49402289480068 78.25662881828968 2 6.755945573179364 11.684694925132808 3 1.5706483119270709 4.074754487158909 4 0.5752284317920989 1.9897640278324948 5 0.24073011293057395 1.0408823970005678 6 0.12605474498660754 0.6540511123481868 7 0.07670213694810489 0.46430861708808346 8 0.04381612412285688 0.3031273935715838 9 0.02620522613907223 0.20395373423765523 >10 0.08868283464131897 1.178740381544063 >50 0.0016686019454592708 0.09186346861133074 >100 2.6010614053988606E-4 0.03728107489403751 >500 3.490044626531811E-5 0.019949562290552836 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.899018246056703E-5 0.0 0.0 9.831697076761171E-6 3 0.0 5.899018246056703E-5 0.0 0.0 9.831697076761171E-6 4 0.0 1.0814866784437288E-4 0.0 9.831697076761171E-6 9.831697076761171E-6 5 0.0 1.1798036492113406E-4 0.0 9.831697076761171E-6 1.9663394153522342E-5 6 1.0814866784437288E-4 1.1798036492113406E-4 0.0 9.831697076761171E-6 2.9495091230283515E-5 7 1.0814866784437288E-4 1.1798036492113406E-4 0.0 9.831697076761171E-6 2.9495091230283515E-5 8 1.0814866784437288E-4 1.2781206199789522E-4 0.0 9.831697076761171E-6 2.9495091230283515E-5 9 1.0814866784437288E-4 2.2612903276550696E-4 0.0 9.831697076761171E-6 2.9495091230283515E-5 10-11 1.0814866784437288E-4 2.2612903276550696E-4 0.0 4.915848538380586E-5 3.9326788307044685E-5 12-13 1.0814866784437288E-4 2.2612903276550696E-4 0.0 4.915848538380586E-5 3.9326788307044685E-5 14-15 1.1798036492113406E-4 2.8020336668769337E-4 0.0 4.915848538380586E-5 3.9326788307044685E-5 16-17 1.9663394153522344E-4 3.0478260937959634E-4 0.0 4.915848538380586E-5 4.915848538380586E-5 18-19 2.01549790073604E-4 3.391935491482604E-4 0.0 7.865357661408938E-5 5.899018246056703E-5 20-21 2.113814871503652E-4 3.785203374553051E-4 0.0 9.831697076761171E-5 6.88218795373282E-5 22-23 2.2121318422712636E-4 4.3751051991587213E-4 0.0 1.4747545615141758E-4 7.373772807570879E-5 24-25 2.2612903276550696E-4 4.6700561114615565E-4 0.0 2.6545582107255164E-4 8.848527369085055E-5 26-27 2.2612903276550696E-4 5.014165509148197E-4 0.0 7.373772807570879E-4 8.848527369085055E-5 28-29 2.2612903276550696E-4 5.112482479915809E-4 0.0 0.0034804207651734547 9.340112222923114E-5 30-31 2.3596072984226812E-4 5.849859760672897E-4 0.0 0.008548660608243839 9.831697076761172E-5 32-33 2.457924269190293E-4 5.899018246056703E-4 0.0 0.02057774198166113 9.831697076761172E-5 34-35 2.5562412399579045E-4 6.587237041429985E-4 0.0 0.035403941173416976 1.0814866784437288E-4 36-37 2.5562412399579045E-4 7.324614322187072E-4 0.0 0.053420526066581826 1.1306451638275347E-4 38-39 2.5562412399579045E-4 7.570406749106102E-4 0.0 0.07628413761858993 1.1798036492113406E-4 40-41 2.5562412399579045E-4 8.111150088327966E-4 0.0 0.09659642377917851 1.1798036492113406E-4 42-43 3.0478260937959634E-4 8.504417971398413E-4 0.0 0.11459826112672822 1.1798036492113406E-4 44-45 3.0478260937959634E-4 9.290953737539307E-4 0.0 0.13231497925905183 1.1798036492113406E-4 46-47 3.0478260937959634E-4 9.880855562144977E-4 0.0 0.14902886428954584 1.1798036492113406E-4 48-49 3.0478260937959634E-4 0.0010028331018296396 0.0 0.16117101017934587 1.2781206199789522E-4 50-51 3.2444600353311867E-4 0.0010962342240588706 0.0 0.17171550529417223 1.3272791053627582E-4 52-53 3.2444600353311867E-4 0.0011011500725972513 0.0 0.18070659227087033 1.5730715322817877E-4 54-55 3.2936185207149926E-4 0.0011011500725972513 0.0 0.19027774937509734 1.8188639592008169E-4 56-57 3.44109397686641E-4 0.0011404768609042958 0.0 0.19857570170788374 1.8680224445846225E-4 58-59 3.539410947634022E-4 0.0011404768609042958 0.0 0.20609694997160605 1.9663394153522342E-4 60-61 3.588569433017828E-4 0.0011650561035961987 0.0 0.21369685181194242 2.064656386119846E-4 62-63 3.736044889169245E-4 0.0011896353462881018 0.0 0.22083466388967105 2.2612903276550696E-4 64-65 3.736044889169245E-4 0.0013076157112092359 0.0 0.2277414310860958 2.2612903276550696E-4 66-67 4.03099580147208E-4 0.001317447408285997 0.0 0.2350758771053596 2.2612903276550696E-4 68-69 4.227629743007304E-4 0.001376437590746564 0.0 0.24266103140008083 2.2612903276550696E-4 70-71 4.5717391406939446E-4 0.0014010168334384668 0.0 0.2499954774193447 2.2612903276550696E-4 72-73 5.063323994532003E-4 0.0014108485305152282 0.0 0.2558060103917106 2.457924269190293E-4 74-75 5.161640965299615E-4 0.0014206802275919892 0.0 0.2609479879628567 2.457924269190293E-4 76-77 5.210799450683421E-4 0.001460007015899034 0.0 0.26553939049770414 2.457924269190293E-4 78-79 5.210799450683421E-4 0.0014747545615141756 0.0 0.2694819010254853 2.457924269190293E-4 80-81 5.210799450683421E-4 0.0014845862585909368 0.0 0.27163504268529604 2.507082754574099E-4 82-83 5.210799450683421E-4 0.001494417955667698 0.0 0.272952490093582 2.6053997253417104E-4 84-85 5.358274906834839E-4 0.0015091655012828397 0.0 0.27416178883402365 2.6545582107255164E-4 86-87 5.407433392218645E-4 0.0015534081381282652 0.0 0.2747369431130142 2.6545582107255164E-4 88-89 5.407433392218645E-4 0.0016222300176655933 0.0 0.2748057649925515 2.752875181493128E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11155 0.0 45.11709 1 GTATCAA 19420 0.0 33.301662 1 TCAACGC 23310 0.0 26.88443 4 ATCAACG 23700 0.0 26.477213 3 CAACGCA 23900 0.0 26.220757 5 AACGCAG 24520 0.0 25.608767 6 TATCAAC 25395 0.0 25.08872 2 ACGCAGA 28480 0.0 22.033356 7 CGCAGAG 28915 0.0 21.701881 8 GTACATG 25555 0.0 18.437664 1 TACATGG 25315 0.0 17.87126 2 AGAGTAC 31235 0.0 17.75392 10-11 GCAGAGT 34915 0.0 17.745607 9 ACATGGG 25230 0.0 17.567102 3 GAGTACT 20625 0.0 17.213808 12-13 CAGAGTA 34080 0.0 16.265705 10-11 GTGGTAT 5570 0.0 15.57082 1 CATGGGG 18080 0.0 15.566447 4 AGTACTT 23025 0.0 15.42859 12-13 GTACTTT 23590 0.0 14.997753 14-15 >>END_MODULE