##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139825_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14225902 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.023712380417074 33.0 31.0 34.0 30.0 34.0 2 32.17829618114901 33.0 31.0 34.0 30.0 34.0 3 32.23875540545689 34.0 31.0 34.0 30.0 34.0 4 35.89471929442506 37.0 35.0 37.0 35.0 37.0 5 35.77670892151514 37.0 35.0 37.0 35.0 37.0 6 35.79595473102514 37.0 35.0 37.0 33.0 37.0 7 35.68352171974754 37.0 35.0 37.0 33.0 37.0 8 35.6713124412076 37.0 35.0 37.0 33.0 37.0 9 37.2570856315473 39.0 37.0 39.0 33.0 39.0 10-11 37.17751816369886 39.0 37.0 39.0 33.0 39.0 12-13 37.14380444909574 39.0 37.0 39.0 33.0 39.0 14-15 38.34093788921082 40.0 38.0 41.0 33.0 41.0 16-17 38.34471831733411 40.0 38.0 41.0 33.0 41.0 18-19 38.38810365065076 40.0 38.0 41.0 33.5 41.0 20-21 38.36756555958364 40.0 38.0 41.0 34.0 41.0 22-23 38.28756258544118 40.0 38.0 41.0 33.5 41.0 24-25 38.21975188614525 40.0 38.0 41.0 33.0 41.0 26-27 38.06075715101098 40.0 37.0 41.0 33.0 41.0 28-29 37.96350209478629 40.0 37.0 41.0 33.0 41.0 30-31 37.844844407485944 40.0 37.0 41.0 33.0 41.0 32-33 38.00342404900327 40.0 37.0 41.0 33.0 41.0 34-35 37.98810099310576 40.0 37.0 41.0 33.0 41.0 36-37 37.91449390458016 40.0 37.0 41.0 33.0 41.0 38-39 37.73630221896242 40.0 37.0 41.0 33.0 41.0 40-41 37.76277842853773 40.0 37.0 41.0 33.0 41.0 42-43 37.73894333161359 40.0 37.0 41.0 33.0 41.0 44-45 37.722773290899 40.0 37.0 41.0 33.0 41.0 46-47 37.751958984199504 40.0 37.0 41.0 33.0 41.0 48-49 37.68340839742723 40.0 37.0 41.0 32.0 41.0 50-51 37.60657886025752 40.0 37.0 41.0 32.0 41.0 52-53 37.47898941886652 39.5 36.0 41.0 32.0 41.0 54-55 37.392072192026106 39.0 36.0 41.0 31.5 41.0 56-57 37.25989528535536 39.0 36.0 41.0 31.0 41.0 58-59 37.1280858301193 39.0 35.5 40.5 31.0 41.0 60-61 36.93816158877229 39.0 35.0 40.0 31.0 41.0 62-63 36.717170087886515 38.5 35.0 40.0 31.0 41.0 64-65 36.53073765942878 38.0 35.0 40.0 31.0 41.0 66-67 36.25436648957286 38.0 35.0 40.0 30.0 41.0 68-69 35.98537756229979 37.0 34.0 40.0 30.0 41.0 70-71 35.70473386124726 37.0 34.0 39.0 30.0 41.0 72-73 35.407893577968146 36.0 34.0 39.0 30.0 40.5 74-75 35.07225399177931 36.0 34.0 39.0 29.0 40.0 76-77 33.99730559100344 35.0 32.5 37.0 28.5 39.0 78-79 34.32089514222771 35.0 33.0 37.0 29.0 39.0 80-81 34.204978683099 35.0 33.0 37.0 29.0 39.0 82-83 33.976287826240124 35.0 33.0 36.0 29.0 38.5 84-85 33.7453090644815 35.0 33.0 36.0 29.0 37.0 86-87 33.52824753489742 35.0 33.0 35.5 29.0 37.0 88-89 33.301571070019385 35.0 33.0 35.0 29.0 36.5 90-91 33.186950065817 35.0 33.0 35.0 29.0 36.0 92-93 33.10800064142948 35.0 33.0 35.0 29.0 36.0 94-95 33.05425279005671 34.0 33.0 35.0 29.0 36.0 96-97 32.97353749148769 34.0 32.5 35.0 29.0 35.0 98-99 33.09176155876544 34.0 33.0 35.0 29.0 35.0 100-101 32.63334244664651 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 0.0 18 4.0 19 17.0 20 76.0 21 598.0 22 2477.0 23 8553.0 24 22658.0 25 47992.0 26 86248.0 27 136111.0 28 195088.0 29 259473.0 30 329945.0 31 409754.0 32 510286.0 33 643022.0 34 843296.0 35 1139346.0 36 1693053.0 37 2778588.0 38 3420811.0 39 1636081.0 40 62423.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.53018262040607 22.583552171243692 15.558837675108405 24.32742753324183 2 13.601435324731817 22.998094073999248 41.442829495577385 21.95764110569155 3 16.687881505075396 27.882321895878302 31.903180482461135 23.526616116585167 4 11.888567768848683 19.969826869326106 39.96836193585475 28.17324342597046 5 12.392296811829578 38.494873646676325 36.61563252720285 12.497197014291256 6 28.066684277735078 40.06329440481173 19.37579775257836 12.494223564874831 7 24.61500859488558 33.32236507744816 24.826833476007355 17.235792851658896 8 23.06402785566778 38.01574761305118 22.0984792387857 16.821745292495336 9 24.788157545300116 16.879991159787266 22.106570114148123 36.2252811807645 10-11 23.133443489207224 27.560607404718517 30.14128383564009 19.16466527043417 12-13 24.058003492502618 25.111156396269287 30.00422398523482 20.826616125993276 14-15 21.277708787815353 26.55108969540209 27.469534093514774 24.701667423267786 16-17 20.922328861818393 29.585638928202933 28.175366314206297 21.316665895772374 18-19 20.95867102135246 28.848525738473384 29.69625054355077 20.496552696623386 20-21 21.63895762035241 28.07378323341275 29.510607961063045 20.77665118517179 22-23 21.36037223870792 28.087777113475354 29.37064672559523 21.1812039222215 24-25 21.252175570183983 28.190523339341127 29.379036891341386 21.178264199133498 26-27 21.275925426079624 28.33966358414391 29.252801281530612 21.131609708245858 28-29 21.250152637881715 28.37434937553071 29.26837628132244 21.107121705265136 30-31 21.43476944375094 28.265029987994655 29.257438723026464 21.042761845227943 32-33 21.296769111605915 28.36746451556913 29.16870779829017 21.16705857453478 34-35 21.436723339484452 28.362908046910697 29.195276324819442 21.00509228878541 36-37 21.304156350759737 28.4303371611824 29.14201935755901 21.12348713049885 38-39 21.248222395539194 28.408587393758673 29.18010191186211 21.163088298840023 40-41 21.430492194118813 28.2975153721534 29.097994091271772 21.17399834245602 42-43 21.379097222697823 28.393141471092797 28.87473995168351 21.353021354525872 44-45 21.38442779813887 28.52275768549426 28.728733101708897 21.36408141465797 46-47 21.485794049791654 28.448317684676645 28.495073501281276 21.57081476425042 48-49 21.442834951100313 28.519757114795958 28.504053070952075 21.533354863151654 50-51 21.437679941499145 28.6167359308187 28.40183420640004 21.543749921282114 52-53 21.55357116882063 28.545223270303026 28.344388327335 21.55681723354134 54-55 21.496275855208708 28.49982204008367 28.352352988446487 21.651549116261133 56-57 21.571865371160033 28.533702502109698 28.285420590245003 21.60901153648527 58-59 21.52558742440917 28.59732055175474 28.351185501184368 21.52590652265172 60-61 21.60488268356503 28.601832280290907 28.267435274974616 21.525849761169454 62-63 21.541921114305868 28.68074277939411 28.23347196289466 21.543864143405365 64-65 21.500552142948916 28.613446266489067 28.248499293354605 21.63750229720741 66-67 21.572713932861788 28.624213349112253 28.114221813799347 21.688850904226616 68-69 21.568497447995263 28.598403724213156 28.125547263469215 21.707551564322365 70-71 21.555764345405873 28.447140666849148 28.192355491872966 21.804739495872017 72-73 21.572262817652216 28.43143569528095 28.171536731056644 21.82476475601019 74-75 21.54127579652228 28.45525722657314 28.17555319450708 21.827913782397495 76-77 21.653212602934254 28.44158522957069 28.079634641510903 21.82556752598415 78-79 21.6440887791152 28.413466175096126 28.07169540780074 21.870749637987934 80-81 21.654910443278556 28.42593597244345 28.053818623378856 21.865334960899137 82-83 21.65427047901123 28.368220590550248 28.161586310841397 21.81592261959712 84-85 21.76840528760303 28.34207132766383 28.12678593536575 21.76273744936739 86-87 21.649296015029954 28.37277306007295 28.1605525565491 21.81737836834799 88-89 21.688727182557788 28.33270301472725 28.191995126827933 21.786574675887028 90-91 21.747384135906255 28.318440552154282 28.199337054469943 21.734838257469523 92-93 21.75987904660193 28.23183708235648 28.253822150469237 21.754461720572348 94-95 21.644065837658623 28.291304033536186 28.28759908963085 21.777031039174346 96-97 21.558072180843705 28.307349416279383 28.403514849958523 21.731063552918393 98-99 21.754791800798266 28.892798252056323 28.47041447877135 20.88199546837406 100-101 22.29252162188169 31.59749863378636 25.74298722385993 20.366992520472024 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3027.0 1 2696.0 2 3698.5 3 5334.0 4 7253.5 5 11257.0 6 14490.0 7 16743.5 8 18005.0 9 17747.5 10 16715.5 11 15895.0 12 17832.5 13 23744.0 14 37419.5 15 56022.5 16 70482.0 17 77832.0 18 79699.0 19 78402.5 20 76145.5 21 75004.0 22 77803.5 23 88743.0 24 107143.5 25 132468.0 26 164948.5 27 199229.0 28 234947.0 29 270645.0 30 302857.5 31 336901.0 32 372126.0 33 405303.0 34 437718.5 35 468320.0 36 500344.5 37 528970.5 38 550034.5 39 566962.5 40 580830.5 41 592472.5 42 600596.5 43 606467.5 44 609883.5 45 610015.0 46 607601.0 47 602817.5 48 590331.5 49 569905.0 50 547879.0 51 520732.0 52 487089.0 53 449273.0 54 408675.0 55 369290.0 56 332753.0 57 295624.0 58 257294.0 59 218568.0 60 178936.0 61 142482.0 62 111483.5 63 85796.0 64 64320.0 65 47935.0 66 36344.0 67 27301.5 68 20469.5 69 14855.0 70 10537.5 71 7621.0 72 5342.0 73 3686.0 74 2496.0 75 1641.0 76 1092.5 77 719.0 78 483.5 79 338.0 80 251.0 81 194.0 82 153.0 83 111.0 84 76.5 85 51.0 86 35.0 87 28.0 88 21.0 89 15.0 90 10.5 91 7.5 92 6.0 93 4.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019049758672595944 3 7.029431244500349E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.00222489913087637 22-23 4.780704850250045E-4 24-25 0.0011919345480962994 26-27 0.011712737411999267 28-29 3.34306634843021E-4 30-31 0.0024979682428259075 32-33 0.002659625757807909 34-35 0.0017117656671479103 36-37 0.06394921274975275 38-39 0.0281667381926978 40-41 0.02612477661671675 42-43 0.0036099821872332015 44-45 0.0017246140036230133 46-47 0.003594756250619417 48-49 0.0030167384654178273 50-51 7.73895150864031E-4 52-53 0.0010067292770615816 54-55 0.0015754909826503304 56-57 0.012114124960532593 58-59 0.009323890324106228 60-61 0.004860694525174038 62-63 0.002751543136995712 64-65 0.001362042478242388 66-67 6.129322282892E-4 68-69 0.0017283075537868051 70-71 4.216271451651298E-5 72-73 6.402462643231092E-4 74-75 2.462519587831248E-4 76-77 0.005476840075001213 78-79 0.0015068835326172033 80-81 6.921811220453755E-4 82-83 4.923530056167904E-4 84-85 0.00301874929934274 86-87 0.003784734790454664 88-89 0.04364660632632887 90-91 4.3595526517705596E-4 92-93 5.772527201060922E-4 94-95 2.5169392528657115E-4 96-97 0.01876260782172992 98-99 1.8872752086719757E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 318.0 20-21 1226.0 22-23 2501.0 24-25 5066.0 26-27 6313.0 28-29 11401.0 30-31 33102.0 32-33 43699.0 34-35 62192.0 36-37 97098.0 38-39 101741.0 40-41 106820.0 42-43 122516.0 44-45 144650.0 46-47 144583.0 48-49 131668.0 50-51 121384.0 52-53 111483.0 54-55 122003.0 56-57 129955.0 58-59 132860.0 60-61 132345.0 62-63 129445.0 64-65 138915.0 66-67 150087.0 68-69 146847.0 70-71 146184.0 72-73 140750.0 74-75 143131.0 76-77 145345.0 78-79 156490.0 80-81 157497.0 82-83 152779.0 84-85 152936.0 86-87 160162.0 88-89 172542.0 90-91 186444.0 92-93 194350.0 94-95 239173.0 96-97 307875.0 98-99 1139520.0 100-101 8300506.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.23423547716592 #Duplication Level Percentage of deduplicated Percentage of total 1 89.64278329362986 75.50991316784173 2 7.007747879189672 11.805845700405458 3 1.7910575494777 4.52605090127581 4 0.6886406825535464 2.3202848565348675 5 0.3375785211815188 1.421783432261875 6 0.16806552658419224 0.8494122685132043 7 0.10331785927800755 0.6092030621194265 8 0.0635552236178486 0.42828205376238365 9 0.041833299492950046 0.3171416400248364 >10 0.1520343708108964 1.9492833367231917 >50 0.0027393760769147857 0.15490048455938207 >100 6.178328043839875E-4 0.08958745827653262 >500 2.8585302448431637E-5 0.018311637701257367 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.0294312445003485E-6 0.0 7.0294312445003485E-6 0.0 3 0.0 7.0294312445003485E-6 0.0 1.4058862489000697E-5 0.0 4 0.0 2.1088293733501046E-5 0.0 2.1088293733501046E-5 0.0 5 0.0 2.1088293733501046E-5 0.0 2.8117724978001394E-5 0.0 6 3.5147156222501746E-5 2.1088293733501046E-5 0.0 2.8117724978001394E-5 0.0 7 3.5147156222501746E-5 2.1088293733501046E-5 0.0 2.8117724978001394E-5 0.0 8 3.5147156222501746E-5 2.1088293733501046E-5 0.0 2.8117724978001394E-5 7.0294312445003485E-6 9 3.5147156222501746E-5 4.217658746700209E-5 0.0 3.5147156222501746E-5 1.4058862489000697E-5 10-11 3.5147156222501746E-5 4.217658746700209E-5 0.0 4.569130308925227E-5 1.4058862489000697E-5 12-13 3.5147156222501746E-5 4.217658746700209E-5 0.0 6.677959682275332E-5 1.4058862489000697E-5 14-15 3.5147156222501746E-5 5.2720734333752616E-5 0.0 8.435317493400418E-5 3.163244060025157E-5 16-17 7.732374368950384E-5 5.623544995600279E-5 0.0 9.138260617850453E-5 3.866187184475192E-5 18-19 7.732374368950384E-5 5.623544995600279E-5 0.0 1.1247089991200558E-4 4.217658746700209E-5 20-21 7.732374368950384E-5 6.326488120050313E-5 0.0 1.651916342457582E-4 4.569130308925227E-5 22-23 7.732374368950384E-5 6.677959682275332E-5 0.0 3.1983912162476585E-4 7.029431244500348E-5 24-25 7.732374368950384E-5 7.029431244500349E-5 0.0 0.00100520866796355 9.841203742300489E-5 26-27 7.732374368950384E-5 7.029431244500349E-5 0.0 0.0032616560974481623 9.841203742300489E-5 28-29 7.732374368950384E-5 7.029431244500349E-5 0.0 0.017387298183271612 9.841203742300489E-5 30-31 7.732374368950384E-5 7.732374368950384E-5 0.0 0.026149484229541296 9.841203742300489E-5 32-33 7.732374368950384E-5 7.732374368950384E-5 0.0 0.03332653353017616 9.841203742300489E-5 34-35 7.732374368950384E-5 8.435317493400418E-5 0.0 0.0432977817504999 9.841203742300489E-5 36-37 7.732374368950384E-5 9.138260617850453E-5 0.0 0.05585586066879977 9.841203742300489E-5 38-39 7.732374368950384E-5 9.138260617850453E-5 0.0 0.0785679530197804 9.841203742300489E-5 40-41 7.732374368950384E-5 9.138260617850453E-5 0.0 0.12041767193391323 9.841203742300489E-5 42-43 7.732374368950384E-5 9.841203742300489E-5 0.0 0.13882775236325962 1.0192675304525506E-4 44-45 7.732374368950384E-5 1.2652976240100627E-4 0.0 0.1658840332233415 1.089561842897554E-4 46-47 7.732374368950384E-5 1.4761805613450733E-4 0.0 0.19594891065606945 1.1247089991200558E-4 48-49 7.732374368950384E-5 1.5113277175675752E-4 0.0 0.22097720060211296 1.3355919364550664E-4 50-51 9.138260617850453E-5 2.1088293733501046E-4 0.0 0.24363657221875984 1.3707390926775683E-4 52-53 9.138260617850453E-5 2.1088293733501046E-4 0.0 0.2748261586506079 1.5113277175675752E-4 54-55 9.138260617850453E-5 2.1088293733501046E-4 0.0 0.3371842432205705 1.6167691862350802E-4 56-57 9.841203742300489E-5 2.1088293733501046E-4 0.0 0.4011626116923904 1.6167691862350802E-4 58-59 9.841203742300489E-5 2.1088293733501046E-4 0.0 0.4521224734993957 1.651916342457582E-4 60-61 1.0192675304525506E-4 2.1439765295726065E-4 0.0 0.48611680299779936 1.6870634986800836E-4 62-63 1.2652976240100627E-4 2.179123685795108E-4 0.0 0.5161816804305274 1.757357811125087E-4 64-65 1.2652976240100627E-4 2.5305952480201253E-4 0.0 0.53077477969411 1.792504967347589E-4 66-67 1.4058862489000698E-4 2.5305952480201253E-4 0.0 0.538711007569151 1.8276521235700906E-4 68-69 1.4058862489000698E-4 2.5305952480201253E-4 0.0 0.5467807946378374 1.8627992797925924E-4 70-71 1.4761805613450733E-4 2.5305952480201253E-4 0.0 0.554108976710229 1.8979464360150943E-4 72-73 1.6870634986800836E-4 2.5305952480201253E-4 0.0 0.5600347872493427 2.179123685795108E-4 74-75 1.6870634986800836E-4 2.636036716687631E-4 0.0 0.5657075382636545 2.179123685795108E-4 76-77 1.6870634986800836E-4 2.811772497800139E-4 0.0 0.5710217882844968 2.179123685795108E-4 78-79 1.6870634986800836E-4 2.882066810245143E-4 0.0 0.5755663155840662 2.179123685795108E-4 80-81 1.6870634986800836E-4 2.882066810245143E-4 0.0 0.5786170887441795 2.2494179982401115E-4 82-83 1.6870634986800836E-4 2.882066810245143E-4 0.0 0.58050800574895 2.319712310685115E-4 84-85 1.6870634986800836E-4 2.882066810245143E-4 0.0 0.5821774956695189 2.319712310685115E-4 86-87 1.6870634986800836E-4 2.9523611226901466E-4 0.0 0.5824727317817879 2.319712310685115E-4 88-89 1.792504967347589E-4 3.0929497475801535E-4 0.0 0.5824938200755214 2.319712310685115E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15850 0.0 46.16069 1 GTATCAA 27595 0.0 33.134583 1 TCAACGC 32825 0.0 26.997688 4 ATCAACG 32940 0.0 26.916183 3 CAACGCA 33875 0.0 26.185656 5 AACGCAG 34715 0.0 25.576239 6 TATCAAC 35555 0.0 25.279387 2 ACGCAGA 39975 0.0 22.158325 7 CGCAGAG 40480 0.0 21.892271 8 GTACATG 35660 0.0 18.373703 1 TACATGG 34835 0.0 18.145718 2 GCAGAGT 49000 0.0 17.931412 9 AGAGTAC 43355 0.0 17.795853 10-11 GAGTACT 28860 0.0 17.558195 12-13 ACATGGG 35035 0.0 17.454529 3 CAGAGTA 48195 0.0 16.479286 10-11 AGTACTT 32110 0.0 15.63717 12-13 GTACTTT 32775 0.0 15.397782 14-15 CATGGGG 25450 0.0 15.215702 4 TATACTG 8795 0.0 14.326306 5 >>END_MODULE