##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139824_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14865975 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02094420312156 33.0 31.0 34.0 30.0 34.0 2 32.17888688767471 33.0 31.0 34.0 30.0 34.0 3 32.23666076392568 34.0 31.0 34.0 30.0 34.0 4 35.896032248137104 37.0 35.0 37.0 35.0 37.0 5 35.77626068925853 37.0 35.0 37.0 35.0 37.0 6 35.79452615788739 37.0 35.0 37.0 33.0 37.0 7 35.68258476151077 37.0 35.0 37.0 33.0 37.0 8 35.669906750145884 37.0 35.0 37.0 33.0 37.0 9 37.252339923886595 39.0 37.0 39.0 33.0 39.0 10-11 37.17448640267456 39.0 37.0 39.0 33.0 39.0 12-13 37.140745998832905 39.0 37.0 39.0 33.0 39.0 14-15 38.332410622243074 40.0 38.0 41.0 33.0 41.0 16-17 38.33707785732184 40.0 38.0 41.0 33.0 41.0 18-19 38.38338359912485 40.0 38.0 41.0 33.5 41.0 20-21 38.36307023690203 40.0 38.0 41.0 34.0 41.0 22-23 38.28246144614159 40.0 38.0 41.0 33.5 41.0 24-25 38.21329114388842 40.0 38.0 41.0 33.0 41.0 26-27 38.051717954726456 40.0 37.0 41.0 33.0 41.0 28-29 37.95204001898891 40.0 37.0 41.0 33.0 41.0 30-31 37.83362677086959 40.0 37.0 41.0 33.0 41.0 32-33 37.98866424020228 40.0 37.0 41.0 33.0 41.0 34-35 37.97123095432099 40.0 37.0 41.0 33.0 41.0 36-37 37.89701803099828 40.0 37.0 41.0 33.0 41.0 38-39 37.71558187026692 40.0 37.0 41.0 33.0 41.0 40-41 37.741371233475334 40.0 37.0 41.0 33.0 41.0 42-43 37.715986652213616 40.0 37.0 41.0 33.0 41.0 44-45 37.69690183603747 40.0 37.0 41.0 32.5 41.0 46-47 37.72360824423613 40.0 37.0 41.0 32.5 41.0 48-49 37.65075492470274 40.0 37.0 41.0 32.0 41.0 50-51 37.573145202671654 40.0 36.5 41.0 32.0 41.0 52-53 37.44180960577583 39.5 36.0 41.0 32.0 41.0 54-55 37.34862230406587 39.0 36.0 41.0 31.0 41.0 56-57 37.210842078879665 39.0 36.0 41.0 31.0 41.0 58-59 37.07283920025395 39.0 35.0 40.5 31.0 41.0 60-61 36.87741900718056 39.0 35.0 40.0 31.0 41.0 62-63 36.64785472482049 38.0 35.0 40.0 31.0 41.0 64-65 36.45572167244766 38.0 35.0 40.0 31.0 41.0 66-67 36.171322287723974 37.5 34.5 40.0 30.0 41.0 68-69 35.89904383061536 37.0 34.0 40.0 30.0 41.0 70-71 35.613948617915504 36.5 34.0 39.0 30.0 41.0 72-73 35.31492867977603 36.0 34.0 39.0 29.0 40.0 74-75 34.97814639345397 36.0 34.0 38.5 29.0 40.0 76-77 33.90747810943725 35.0 32.5 37.0 28.5 39.0 78-79 34.232998877734374 35.0 33.0 37.0 29.0 39.0 80-81 34.12245778558791 35.0 33.0 37.0 29.0 39.0 82-83 33.90319958937526 35.0 33.0 36.0 29.0 38.5 84-85 33.68061109217976 35.0 33.0 36.0 29.0 37.0 86-87 33.470530767416726 35.0 33.0 35.5 29.0 37.0 88-89 33.2547229556138 35.0 33.0 35.0 29.0 36.5 90-91 33.14811872799612 35.0 33.0 35.0 29.0 36.0 92-93 33.07333075166392 35.0 33.0 35.0 29.0 36.0 94-95 33.022164384264805 34.0 33.0 35.0 29.0 36.0 96-97 32.943367546965334 34.0 32.0 35.0 29.0 35.0 98-99 33.06732419710635 34.0 33.0 35.0 29.0 35.0 100-101 32.60846692337586 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 3.0 19 10.0 20 86.0 21 561.0 22 2585.0 23 9086.0 24 23749.0 25 51323.0 26 91721.0 27 144666.0 28 206858.0 29 273539.0 30 349531.0 31 433274.0 32 539383.0 33 678840.0 34 889794.0 35 1207366.0 36 1797256.0 37 2932772.0 38 3503577.0 39 1662014.0 40 67979.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.8144319494685 22.361856521351612 15.628884079248081 24.194827449931807 2 13.785861138543746 22.901827285869782 41.10802922349684 22.20428235208963 3 16.73603766779439 27.763363043710186 31.840267047635397 23.660332240860026 4 11.996185921205974 19.890548719475177 39.681521057313766 28.43174430200508 5 12.49577642906032 38.44171673906353 36.42131780794735 12.641189023928803 6 28.348857037631237 39.76765735177141 19.23267730505399 12.650808305543363 7 24.836386446230403 33.283703221618495 24.571082623238638 17.308827708912467 8 23.478843466372034 37.597412884119606 21.88566844757912 17.03807520192924 9 24.95685617660463 16.80288040306808 21.90845201878787 36.33181140153942 10-11 23.327272513239127 27.40223227874391 29.90058506085205 19.36991014716492 12-13 24.318838824900485 24.988582989006776 29.812632538397242 20.879945647695493 14-15 21.51658064809069 26.368250316578628 27.31933156082934 24.795837474501337 16-17 21.06032735827956 29.422278054416207 28.017028819165912 21.500365768138316 18-19 21.117057576109204 28.60124546153212 29.624336782484832 20.65736017987384 20-21 21.84776670842802 27.82450922284298 29.45198763768943 20.875736431039567 22-23 21.60255358817366 27.82677170333984 29.257209239678534 21.313465468807966 24-25 21.427524033980614 27.97319946524906 29.301230915042947 21.298045585727376 26-27 21.42163779592767 28.11146434257681 29.20255626095245 21.264341600543073 28-29 21.354082244793883 28.177346998645923 29.204313244086283 21.264257512473907 30-31 21.651887027481038 27.997830533128543 29.110083583283775 21.240198856106645 32-33 21.435050068082344 28.170149430234453 29.05736154919892 21.337438952484284 34-35 21.56904099039162 28.112513341859323 29.095622173945447 21.22282349380361 36-37 21.490271342230297 28.191152212642805 29.009706431228405 21.308870013898495 38-39 21.431976500625023 28.170687221771672 29.078717560541595 21.318618717061707 40-41 21.608208169106184 28.05377366926523 28.970790291908827 21.367227869719756 42-43 21.539602516468797 28.18174518580343 28.757341276111507 21.521311021616263 44-45 21.625838377552903 28.253926162732444 28.585989791298992 21.534245668415657 46-47 21.68639730533987 28.22970613111308 28.351312796149635 21.732583767397415 48-49 21.61089838922542 28.35439351384183 28.29601221655909 21.73869588037366 50-51 21.63649075714401 28.425068192778607 28.210343306495023 21.72809774358236 52-53 21.77124480282597 28.31867104310046 28.154908652695422 21.755175501378158 54-55 21.691274902647294 28.271483345487088 28.174036314185148 21.86320543768047 56-57 21.745088766138775 28.317686185891617 28.111410423596194 21.825814624373415 58-59 21.696468366112658 28.369722773558326 28.15033931140316 21.783469548925858 60-61 21.807949578548104 28.34464310191279 28.12359488716939 21.723812432369712 62-63 21.74337505346698 28.479762085656173 28.051575583582107 21.72528727729474 64-65 21.703048505654213 28.44289185784615 28.019346970834857 21.83471266566478 66-67 21.779874619033787 28.440541546976434 27.894917909145267 21.88466592484451 68-69 21.737397465454183 28.42188222762977 27.930079988078393 21.91064031883765 70-71 21.75945548531597 28.207381675822337 28.001087589365515 22.03207524949618 72-73 21.778034142012412 28.22354498213792 27.931985141279313 22.06643573457035 74-75 21.70378415272806 28.290825033541118 27.940329089016995 22.06506172471383 76-77 21.908683097424788 28.188928310750967 27.890532325805918 22.01185626601833 78-79 21.872717861474936 28.183921499123393 27.849393485520952 22.093967153880723 80-81 21.863881829904035 28.212746794625605 27.822686332994888 22.100685042475472 82-83 21.863517448731212 28.195392023518224 27.91616291462236 22.024927613128206 84-85 21.933302505643198 28.16855325077727 27.902050274512362 21.99609396906717 86-87 21.864293398666522 28.14492619029699 27.975416884395067 22.015363526641423 88-89 21.861653999338078 28.15895057270945 27.94947798176403 22.02991744618844 90-91 21.918434784795014 28.158920745732267 27.98328836641569 21.939356103057023 92-93 21.977865728075123 28.039975040408123 27.993240779965983 21.98891845155077 94-95 21.84220863797871 28.064353948646236 28.0793301648623 22.014107248512758 96-97 21.75269066131858 28.066793704434982 28.19327391333567 21.987241720910763 98-99 21.955222539970016 28.67433258061319 28.25515114749425 21.115293731922545 100-101 22.47923308220931 31.362842582323353 25.502152284346447 20.655772051120888 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3767.0 1 3345.5 2 4343.5 3 6129.5 4 8209.5 5 12559.5 6 16214.0 7 19093.0 8 20923.5 9 20566.5 10 19157.0 11 18115.0 12 20273.0 13 26881.5 14 42102.0 15 63010.5 16 79430.5 17 87502.5 18 89348.0 19 87427.0 20 83280.0 21 79998.5 22 81083.5 23 90317.5 24 108625.5 25 135138.0 26 166801.5 27 200058.0 28 234923.5 29 270431.5 30 302543.5 31 336041.5 32 372197.5 33 405932.5 34 437971.5 35 468937.0 36 502016.0 37 531360.0 38 553513.5 39 571607.0 40 587734.0 41 602575.0 42 612517.5 43 619661.5 44 625486.5 45 627715.0 46 629147.5 47 628500.0 48 619840.0 49 603330.0 50 583088.5 51 557284.5 52 523371.5 53 487442.0 54 450880.0 55 412020.5 56 373204.5 57 333084.0 58 290899.0 59 247969.0 60 205171.5 61 165534.5 62 131063.5 63 100915.0 64 74760.0 65 55457.5 66 41428.0 67 31121.0 68 23741.5 69 17042.5 70 11893.0 71 8528.0 72 5958.0 73 4029.5 74 2722.0 75 1849.0 76 1254.0 77 818.5 78 537.0 79 357.0 80 246.5 81 178.5 82 136.0 83 92.5 84 64.0 85 51.0 86 42.5 87 36.0 88 31.5 89 25.0 90 16.0 91 10.0 92 8.0 93 6.0 94 4.0 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0017893209157152491 3 8.744801467781293E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0023006502532312953 22-23 4.171237086657316E-4 24-25 0.0011439975257352337 26-27 0.011585891427137113 28-29 3.536129102524372E-4 30-31 0.0024143570890784467 32-33 0.002802526479311405 34-35 0.0017538366448731826 36-37 0.06328935683925663 38-39 0.02807046610883613 40-41 0.02599250960430668 42-43 0.0036763018328910845 44-45 0.0017149788293434778 46-47 0.0036211495643725024 48-49 0.002961986591090301 50-51 7.74137554430411E-4 52-53 9.827773765381336E-4 54-55 0.0015239737719675087 56-57 0.011949658924992999 58-59 0.008988647749039671 60-61 0.004756859673706869 62-63 0.0027192552660824016 64-65 0.00127676481497751 66-67 5.473848844665441E-4 68-69 0.0017421255526365097 70-71 7.26458154880233E-5 72-73 6.700507771833166E-4 74-75 3.6807108254916274E-4 76-77 0.005536325456200337 78-79 0.00164206260034827 80-81 6.755924623159258E-4 82-83 5.150433018291238E-4 84-85 0.0030452002885327273 86-87 0.0037047633242262017 88-89 0.04289732501312234 90-91 4.267745156793478E-4 92-93 5.103411900202024E-4 94-95 2.2661962878933332E-4 96-97 0.018376288195614744 98-99 1.2403484097337994E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 351.0 20-21 1351.0 22-23 2696.0 24-25 5579.0 26-27 7064.0 28-29 12889.0 30-31 35326.0 32-33 46670.0 34-35 66253.0 36-37 102198.0 38-39 106099.0 40-41 113940.0 42-43 130362.0 44-45 153001.0 46-47 153759.0 48-49 138916.0 50-51 126328.0 52-53 115070.0 54-55 125758.0 56-57 132613.0 58-59 137272.0 60-61 138557.0 62-63 134033.0 64-65 144134.0 66-67 155524.0 68-69 153125.0 70-71 152283.0 72-73 147703.0 74-75 150367.0 76-77 152499.0 78-79 163422.0 80-81 165556.0 82-83 159280.0 84-85 160129.0 86-87 169547.0 88-89 180347.0 90-91 195255.0 92-93 203935.0 94-95 251728.0 96-97 323357.0 98-99 1195802.0 100-101 8655897.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.85841237655693 #Duplication Level Percentage of deduplicated Percentage of total 1 89.13198367465058 74.74466642929389 2 7.401937611341346 12.414294731948186 3 1.8672133563523003 4.697446428960184 4 0.7364052363014201 2.4701509592808133 5 0.3332901162817276 1.397459000609186 6 0.182706870523193 0.9192904855418467 7 0.09997917940700905 0.5868866679047914 8 0.06390592647105191 0.4287239628252316 9 0.041124216304915855 0.3103750340604324 >10 0.1379786673642742 1.7788473345539342 >50 0.0029880079213816116 0.17065441804262751 >100 4.596065721326072E-4 0.06313924540576234 >500 2.753050863614814E-5 0.0180653015732175 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.726770359831764E-6 0.0 2 0.0 0.0 0.0 2.018031107949529E-5 0.0 3 0.0 0.0 0.0 2.6907081439327055E-5 0.0 4 0.0 1.3453540719663528E-5 0.0 4.708739251882234E-5 0.0 5 0.0 2.6907081439327055E-5 0.0 6.054093323848587E-5 0.0 6 2.6907081439327055E-5 2.6907081439327055E-5 0.0 6.726770359831763E-5 0.0 7 2.6907081439327055E-5 2.6907081439327055E-5 0.0 6.726770359831763E-5 6.726770359831764E-6 8 2.6907081439327055E-5 2.6907081439327055E-5 0.0 6.726770359831763E-5 1.3453540719663528E-5 9 2.6907081439327055E-5 6.054093323848587E-5 0.0 1.1435509611713998E-4 2.018031107949529E-5 10-11 2.6907081439327055E-5 6.054093323848587E-5 0.0 1.648058738158782E-4 2.018031107949529E-5 12-13 2.6907081439327055E-5 6.390431841840176E-5 0.0 1.681692589957941E-4 2.018031107949529E-5 14-15 3.363385179915882E-5 1.2444525165688762E-4 0.0 1.8834957007528937E-4 2.6907081439327055E-5 16-17 5.717754805856999E-5 1.3453540719663527E-4 0.0 2.4889050331377524E-4 2.6907081439327055E-5 18-19 6.054093323848587E-5 1.5135233309621467E-4 0.0 3.0270466619242934E-4 3.363385179915882E-5 20-21 6.054093323848587E-5 1.6144248863596232E-4 0.0 3.834259105104105E-4 3.363385179915882E-5 22-23 6.054093323848587E-5 1.9171295525520526E-4 0.0 6.121361027446905E-4 3.6997236979074695E-5 24-25 6.390431841840176E-5 2.2871019223427995E-4 0.0 0.001422711931104418 4.708739251882234E-5 26-27 6.726770359831763E-5 2.3543696259411173E-4 0.0 0.003662726460928395 4.708739251882234E-5 28-29 6.726770359831763E-5 2.4889050331377524E-4 0.0 0.01933946478451632 4.708739251882234E-5 30-31 7.39944739581494E-5 2.8925112547276583E-4 0.0 0.028904932236197087 4.708739251882234E-5 32-33 7.39944739581494E-5 3.0270466619242934E-4 0.0 0.03606894266941792 4.708739251882234E-5 34-35 8.072124431798117E-5 3.531554438911676E-4 0.0 0.0454460605510234 4.708739251882234E-5 36-37 8.744801467781293E-5 4.069696067698217E-4 0.0 0.05835809625672046 4.708739251882234E-5 38-39 8.744801467781293E-5 4.237865326694011E-4 0.0 0.08103403913971334 4.708739251882234E-5 40-41 8.744801467781293E-5 4.7087392518822347E-4 0.0 0.1254811742923017 4.708739251882234E-5 42-43 8.744801467781293E-5 4.809640807279711E-4 0.0 0.1450291689579728 4.708739251882234E-5 44-45 9.753817021756057E-5 5.381416287865411E-4 0.0 0.174610141615333 4.708739251882234E-5 46-47 1.0762832575730822E-4 5.785022509455317E-4 0.0 0.20595689149214902 4.708739251882234E-5 48-49 1.0762832575730822E-4 5.818656361254476E-4 0.0 0.2329749646424133 4.708739251882234E-5 50-51 1.109917109372241E-4 6.457699545438493E-4 0.0 0.2581902633362426 4.708739251882234E-5 52-53 1.1435509611713998E-4 6.457699545438493E-4 0.0 0.2919990111647571 5.0450777698738226E-5 54-55 1.1435509611713998E-4 6.625868804434287E-4 0.0 0.36219958663996143 5.717754805856999E-5 56-57 1.1435509611713998E-4 6.894939618827557E-4 0.0 0.4336042540095756 6.054093323848587E-5 58-59 1.1435509611713998E-4 6.928573470626716E-4 0.0 0.4916562822149237 6.726770359831763E-5 60-61 1.2444525165688762E-4 7.029475026024193E-4 0.0 0.5268036573450446 7.39944739581494E-5 62-63 1.479889479162988E-4 7.130376581421669E-4 0.0 0.5475994679124645 7.39944739581494E-5 64-65 1.479889479162988E-4 7.66851821020821E-4 0.0 0.5624252697855338 7.39944739581494E-5 66-67 1.5471571827613056E-4 7.836687469204005E-4 0.0 0.5707025607133067 7.39944739581494E-5 68-69 1.5471571827613056E-4 8.139392135396434E-4 0.0 0.5790235756484187 7.39944739581494E-5 70-71 1.648058738158782E-4 8.341195246191386E-4 0.0 0.586244763629698 7.39944739581494E-5 72-73 1.7489602935562585E-4 8.475730653388022E-4 0.0 0.5921273243093709 8.744801467781293E-5 74-75 1.7489602935562585E-4 8.576632208785499E-4 0.0 0.597518830752776 8.744801467781293E-5 76-77 1.7489602935562585E-4 8.744801467781292E-4 0.0 0.602479823893152 8.744801467781293E-5 78-79 1.7489602935562585E-4 8.81206917137961E-4 0.0 0.6069800332638795 8.744801467781293E-5 80-81 1.7489602935562585E-4 8.81206917137961E-4 0.0 0.6096303807856531 9.08113998577288E-5 82-83 1.7825941453554175E-4 8.81206917137961E-4 0.0 0.6115138764864061 9.417478503764468E-5 84-85 1.816227997154576E-4 8.81206917137961E-4 0.0 0.6131552084542049 9.417478503764468E-5 86-87 1.816227997154576E-4 9.013872282174563E-4 0.0 0.613394008801979 9.753817021756057E-5 88-89 1.816227997154576E-4 9.282943096567834E-4 0.0 0.6134074623426987 1.0426494057739233E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17820 0.0 46.694374 1 GTATCAA 30915 0.0 33.854908 1 TCAACGC 37730 0.0 27.116549 4 ATCAACG 38000 0.0 26.979118 3 CAACGCA 38590 0.0 26.501364 5 AACGCAG 39710 0.0 25.806767 6 TATCAAC 40435 0.0 25.510345 2 ACGCAGA 45645 0.0 22.423643 7 CGCAGAG 46340 0.0 22.069218 8 GTACATG 38490 0.0 18.967945 1 GCAGAGT 54675 0.0 18.466814 9 TACATGG 38445 0.0 18.400457 2 AGAGTAC 49505 0.0 18.020863 10-11 GAGTACT 32645 0.0 17.882162 12-13 ACATGGG 39165 0.0 17.783365 3 CAGAGTA 53575 0.0 16.980967 10-11 AGTACTT 36835 0.0 16.207075 12-13 TATACCG 1145 0.0 16.132917 5 CATGGGG 28050 0.0 15.7452135 4 GTACTTT 37325 0.0 15.680321 14-15 >>END_MODULE