##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139823_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12541118 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.998771002712836 33.0 31.0 34.0 30.0 34.0 2 32.15931243131593 33.0 31.0 34.0 30.0 34.0 3 32.220280600182534 34.0 31.0 34.0 30.0 34.0 4 35.88167330855192 37.0 35.0 37.0 35.0 37.0 5 35.7594334093659 37.0 35.0 37.0 35.0 37.0 6 35.775792237980696 37.0 35.0 37.0 33.0 37.0 7 35.66269235326548 37.0 35.0 37.0 33.0 37.0 8 35.65003423139787 37.0 35.0 37.0 33.0 37.0 9 37.23094264801591 39.0 37.0 39.0 33.0 39.0 10-11 37.150593870498625 39.0 37.0 39.0 33.0 39.0 12-13 37.11743713758215 39.0 37.0 39.0 33.0 39.0 14-15 38.30811710726269 40.0 38.0 41.0 33.0 41.0 16-17 38.310040340901026 40.0 38.0 41.0 33.0 41.0 18-19 38.34940600989481 40.0 38.0 41.0 33.5 41.0 20-21 38.32515212328036 40.0 38.0 41.0 33.5 41.0 22-23 38.24365819671682 40.0 38.0 41.0 33.0 41.0 24-25 38.17300380730681 40.0 37.5 41.0 33.0 41.0 26-27 38.01255078466566 40.0 37.0 41.0 33.0 41.0 28-29 37.91195122547439 40.0 37.0 41.0 33.0 41.0 30-31 37.795501313907806 40.0 37.0 41.0 33.0 41.0 32-33 37.962505283107255 40.0 37.0 41.0 33.0 41.0 34-35 37.94810024095594 40.0 37.0 41.0 33.0 41.0 36-37 37.87224018027294 40.0 37.0 41.0 33.0 41.0 38-39 37.690878242052975 40.0 37.0 41.0 32.0 41.0 40-41 37.71522416566461 40.0 37.0 41.0 33.0 41.0 42-43 37.689181925344116 40.0 37.0 41.0 32.5 41.0 44-45 37.66969341664657 40.0 37.0 41.0 32.5 41.0 46-47 37.695837655481796 40.0 37.0 41.0 32.5 41.0 48-49 37.62031564506231 40.0 37.0 41.0 32.0 41.0 50-51 37.545352379264614 40.0 36.5 41.0 32.0 41.0 52-53 37.40907342449671 39.0 36.0 41.0 31.5 41.0 54-55 37.3092290751313 39.0 36.0 41.0 31.0 41.0 56-57 37.17492061951673 39.0 36.0 41.0 31.0 41.0 58-59 37.034330444775954 39.0 35.0 40.0 31.0 41.0 60-61 36.84151003145101 39.0 35.0 40.0 31.0 41.0 62-63 36.60944319617835 38.0 35.0 40.0 31.0 41.0 64-65 36.41599126017738 38.0 35.0 40.0 30.5 41.0 66-67 36.13648138376766 37.5 34.5 40.0 30.0 41.0 68-69 35.86159863549372 37.0 34.0 40.0 30.0 41.0 70-71 35.58195984036193 36.5 34.0 39.0 30.0 41.0 72-73 35.28066164755527 36.0 34.0 39.0 29.0 40.0 74-75 34.94680763524028 36.0 34.0 38.5 29.0 40.0 76-77 33.882571215307195 35.0 32.5 37.0 28.0 39.0 78-79 34.213157127105696 35.0 33.0 37.0 29.0 39.0 80-81 34.09730404633352 35.0 33.0 37.0 29.0 39.0 82-83 33.873718856040604 35.0 33.0 36.0 29.0 38.5 84-85 33.65414596210063 35.0 33.0 36.0 29.0 37.0 86-87 33.4502597237022 35.0 33.0 35.5 29.0 37.0 88-89 33.23234640867731 35.0 33.0 35.0 29.0 36.5 90-91 33.121251675314404 35.0 33.0 35.0 29.0 36.0 92-93 33.05109901713334 34.5 33.0 35.0 29.0 36.0 94-95 32.99526866988046 34.0 33.0 35.0 29.0 36.0 96-97 32.91372661417187 34.0 32.0 35.0 29.0 35.0 98-99 33.04474420210147 34.0 32.5 35.0 29.0 35.0 100-101 32.59641557985189 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 4.0 19 14.0 20 70.0 21 486.0 22 2252.0 23 7830.0 24 21044.0 25 44321.0 26 79776.0 27 124889.0 28 178442.0 29 236733.0 30 299789.0 31 373002.0 32 460055.0 33 580822.0 34 759670.0 35 1027354.0 36 1532547.0 37 2480768.0 38 2928313.0 39 1352810.0 40 50124.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.63646909310637 22.455892688355217 15.555925715713704 24.351712502824707 2 13.719047106058262 22.860405788401778 41.10883526351559 22.31171184202437 3 16.795207950940856 27.67856936393255 31.69275248189813 23.833470203228472 4 12.042227814139059 19.740895508677934 39.656847180610214 28.560029496572792 5 12.51767186944577 38.39246229881578 36.41900187846092 12.67086395327753 6 28.51119812444154 39.73522934717623 19.1967414707365 12.556831057645738 7 24.986719684800033 33.099273924382175 24.630300105620567 17.28370628519722 8 23.454176892363186 37.734235496388756 21.883878295380043 16.92770931586801 9 24.947098017896014 16.790193665349452 21.86328204550822 36.39942627124631 10-11 23.371472942045518 27.36851690574955 29.9403011757006 19.319708976504327 12-13 24.250772538780037 24.921825151473737 29.82266413568551 21.004738174060716 14-15 21.47609965873856 26.34791013050033 27.218474461367798 24.957515749393316 16-17 21.16169387769097 29.36523282852454 27.91031868131693 21.562754612467565 18-19 21.209847479307665 28.636956449975195 29.420207991025997 20.732988079691143 20-21 21.94889443329998 27.860628518042073 29.210765627387293 20.979711421270654 22-23 21.679410821077845 27.82613629738964 29.073136408162135 21.42131647337038 24-25 21.502834371998816 27.93984954848952 29.125603746622232 21.431712332889433 26-27 21.546250747303063 28.025654631898323 29.017310136737606 21.410784484061008 28-29 21.46705362254589 28.091317851106297 29.020405559588674 21.421222966759142 30-31 21.724648821263127 27.966903149816797 28.93046477765504 21.377983251265036 32-33 21.58042851052343 28.092500244576314 28.893897306151135 21.433173938749118 34-35 21.60745208476139 28.106818380572317 28.938731961454323 21.346997573211965 36-37 21.62171651009477 28.08628102946568 28.863060782755106 21.428941677684442 38-39 21.541482462607814 28.13596811390633 28.929285568175395 21.393263855310465 40-41 21.654491551677573 28.027111292297153 28.818807384063742 21.49958977196153 42-43 21.608052101737695 28.160072291734544 28.629983419391287 21.601892187136475 44-45 21.69511319633326 28.214453966680146 28.453350361340007 21.637082475646583 46-47 21.7588312630815 28.196442883136825 28.232279100097816 21.812446753683858 48-49 21.675756074219137 28.294270789615872 28.23686176823101 21.793111367933985 50-51 21.65501120598291 28.39180212601129 28.1439186364855 21.809268031520304 52-53 21.840338568956877 28.274457489623778 28.07036935637258 21.814834585046764 54-55 21.752843510025276 28.20495015829611 28.135206382873513 21.9069999488051 56-57 21.805037145958877 28.266843975341676 28.09565187394266 21.832467004756786 58-59 21.755755927666716 28.351478646518324 28.084055141582382 21.80871028423258 60-61 21.75208794522233 28.173932334361655 28.170798928160217 21.903180792255796 62-63 21.915963234627583 28.247593421980877 28.139864417782995 21.696578925608545 64-65 21.652687993407785 28.192723564128645 28.133748286990773 22.020840155472797 66-67 21.72137792541725 28.266327686665782 27.978773045968808 22.033521341948155 68-69 21.696133799593873 28.445982431740642 28.03550134506328 21.822382423602207 70-71 21.711028668174123 28.23862022339132 28.062213801174906 21.98813730725965 72-73 21.714589102357422 28.228929891477495 27.81136532409344 22.245115682071646 74-75 21.62493857810818 28.28908047281423 27.82847690585365 22.257504043223943 76-77 21.798820929712875 28.03615410945468 27.9598395479224 22.205185412910044 78-79 21.77679877851345 28.033808732785293 27.91926203876801 22.270130449933244 80-81 21.998974100914843 28.03543351145608 27.68526009154215 22.28033229608692 82-83 22.001368362233652 28.253990042193383 27.733392549248205 22.01124904632476 84-85 21.834159561697295 27.985160451875224 27.756129410134754 22.424550576292727 86-87 21.772260636890767 28.20038646422261 27.81000942546921 22.21734347341741 88-89 22.071646540485666 27.925778613219837 27.80642220085895 22.196152645435546 90-91 22.087648900472185 28.182649254795102 27.836710623524162 21.89299122120855 92-93 21.84784846892127 28.094384419511186 27.838327528599134 22.219439582968413 94-95 21.992064913156977 27.856605022748465 27.93293453804476 22.218395526049804 96-97 21.9496311487822 28.14201054184905 28.018974239625287 21.889384069743464 98-99 22.162765322927406 28.54521006720242 28.192712128764924 21.099312481105247 100-101 22.506062359245323 31.328145172731663 25.47434146304163 20.69145100498138 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2165.0 1 2004.0 2 2943.5 3 4287.0 4 5786.5 5 9083.5 6 11889.5 7 14030.5 8 15393.5 9 15166.5 10 14234.5 11 13507.0 12 14982.5 13 19565.0 14 30649.0 15 46319.0 16 58749.0 17 64932.0 18 66292.5 19 65070.5 20 62739.5 21 61461.5 22 64015.5 23 73031.5 24 89044.0 25 112021.0 26 140326.5 27 169574.0 28 198502.0 29 226971.5 30 253523.0 31 281346.0 32 310442.5 33 339214.0 34 367895.5 35 394037.5 36 421826.0 37 445739.5 38 463150.0 39 478124.0 40 493035.0 41 507831.0 42 515109.0 43 519108.0 44 523960.5 45 527069.0 46 524820.5 47 518168.5 48 509596.5 49 498574.5 50 485038.5 51 464555.0 52 437632.0 53 410365.5 54 382712.0 55 352596.0 56 321487.0 57 289071.0 58 254792.5 59 218988.5 60 182476.0 61 147765.0 62 116479.5 63 89158.0 64 65875.5 65 48843.0 66 36772.5 67 27725.5 68 20702.0 69 14886.5 70 10835.5 71 7831.0 72 5497.5 73 3854.5 74 2636.5 75 1789.0 76 1226.0 77 808.5 78 551.0 79 398.0 80 280.0 81 187.5 82 136.0 83 98.0 84 69.5 85 59.0 86 50.0 87 39.0 88 28.5 89 22.0 90 15.5 91 9.5 92 6.5 93 3.5 94 2.5 95 3.0 96 2.5 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019695213775996687 3 8.771147835464111E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.002336402206935223 22-23 4.625468258880441E-4 24-25 0.0012164624299367496 26-27 0.011969781568244074 28-29 2.953974836605273E-4 30-31 0.0026416865166162084 32-33 0.0028322777590361376 34-35 0.0016999766303449045 36-37 0.06308318076993377 38-39 0.02756861448421098 40-41 0.025542889783106107 42-43 0.0034078473317401166 44-45 0.0016444334408487508 46-47 0.0036306095810314408 48-49 0.0030386587946562784 50-51 6.907294497692105E-4 52-53 9.953941812891514E-4 54-55 0.0013966017798205793 56-57 0.012360852853033294 58-59 0.009311304675720802 60-61 0.004708840149110884 62-63 0.002695866458717057 64-65 0.0012111174180621939 66-67 5.222776611999602E-4 68-69 0.0014546069553785519 70-71 5.681363027166574E-5 72-73 5.654777736085773E-4 74-75 2.3278673069077716E-4 76-77 0.0045122839688812475 78-79 0.0013230142203138986 80-81 7.413530995216608E-4 82-83 5.523333270258231E-4 84-85 0.003017636999423538 86-87 0.00347092610303665 88-89 0.04209863511568688 90-91 3.6925470228215155E-4 92-93 6.028605678636823E-4 94-95 2.1443999418754752E-4 96-97 0.017994447080374905 98-99 1.6973800514560763E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 279.0 20-21 1087.0 22-23 2210.0 24-25 4623.0 26-27 5665.0 28-29 9967.0 30-31 27923.0 32-33 36480.0 34-35 51429.0 36-37 81033.0 38-39 85668.0 40-41 91262.0 42-43 103761.0 44-45 123099.0 46-47 122965.0 48-49 112621.0 50-51 104437.0 52-53 94952.0 54-55 103712.0 56-57 110617.0 58-59 66772.0 60-61 118603.0 62-63 112560.0 64-65 119366.0 66-67 127698.0 68-69 128912.0 70-71 128961.0 72-73 123548.0 74-75 126258.0 76-77 127961.0 78-79 137679.0 80-81 138673.0 82-83 133864.0 84-85 134218.0 86-87 141128.0 88-89 152968.0 90-91 165758.0 92-93 173972.0 94-95 213151.0 96-97 274797.0 98-99 1062450.0 100-101 7358031.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.03170666272236 #Duplication Level Percentage of deduplicated Percentage of total 1 90.39481740441944 77.76820414767364 2 6.804230698424514 11.707591590246963 3 1.5893638740736487 4.102070597838964 4 0.5711218200526045 1.9653833956578308 5 0.24462962134646316 1.052295191234588 6 0.13153760526270633 0.6789842802646869 7 0.0722698323220058 0.43522479104236533 8 0.046709872676849895 0.3214824051510288 9 0.03150755721269749 0.2439584027803559 >10 0.11055574842691052 1.4743568876871276 >50 0.002700617051790662 0.15288512596641243 >100 5.106845496586963E-4 0.07215338225466417 >500 4.466418065985927E-5 0.025409802201395947 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.973770759512829E-6 1.5947541519025657E-5 2 0.0 1.5947541519025657E-5 0.0 1.5947541519025657E-5 1.5947541519025657E-5 3 7.973770759512829E-6 1.5947541519025657E-5 0.0 4.784262455707697E-5 1.5947541519025657E-5 4 7.973770759512829E-6 8.771147835464111E-5 0.0 4.784262455707697E-5 1.5947541519025657E-5 5 2.3921312278538484E-5 8.771147835464111E-5 0.0 4.784262455707697E-5 1.5947541519025657E-5 6 3.1895083038051314E-5 8.771147835464111E-5 0.0 4.784262455707697E-5 3.1895083038051314E-5 7 3.1895083038051314E-5 8.771147835464111E-5 0.0 4.784262455707697E-5 3.1895083038051314E-5 8 3.1895083038051314E-5 9.568524911415394E-5 0.0 4.784262455707697E-5 3.1895083038051314E-5 9 3.1895083038051314E-5 1.8339672746879506E-4 0.0 7.973770759512828E-5 3.1895083038051314E-5 10-11 3.1895083038051314E-5 1.8339672746879506E-4 0.0 9.568524911415394E-5 3.1895083038051314E-5 12-13 3.1895083038051314E-5 1.8339672746879506E-4 0.0 1.0365901987366676E-4 3.588196841780773E-5 14-15 3.1895083038051314E-5 2.910426327222182E-4 0.0 1.395409882914745E-4 4.3855739177320555E-5 16-17 4.784262455707697E-5 3.0300328886148745E-4 0.0 1.8339672746879506E-4 4.784262455707697E-5 18-19 4.784262455707697E-5 3.269246011400259E-4 0.0 2.1529181050684637E-4 5.980328069634621E-5 20-21 5.182950993683338E-5 3.628065695578337E-4 0.0 2.511737789246541E-4 6.379016607610263E-5 22-23 5.980328069634621E-5 4.505180479124748E-4 0.0 4.584918186719876E-4 7.176393683561546E-5 24-25 6.379016607610263E-5 5.222819847480902E-4 0.0 9.72800032660565E-4 8.771147835464111E-5 26-27 7.176393683561546E-5 5.58163953165898E-4 0.0 0.0026233705798797205 8.771147835464111E-5 28-29 7.176393683561546E-5 5.58163953165898E-4 0.0 0.015233889036049258 9.169836373439753E-5 30-31 7.176393683561546E-5 6.339147753812698E-4 0.0 0.023008315526574265 9.568524911415394E-5 32-33 7.176393683561546E-5 6.418885461407827E-4 0.0 0.02826303045709322 1.0365901987366676E-4 34-35 7.176393683561546E-5 7.61495107533475E-4 0.0 0.03507661757109693 1.0365901987366676E-4 36-37 7.176393683561546E-5 8.77114783546411E-4 0.0 0.04450560149422085 1.0365901987366676E-4 38-39 7.176393683561546E-5 8.811016689261675E-4 0.0 0.06251436275458057 1.0365901987366676E-4 40-41 7.176393683561546E-5 9.887475741795907E-4 0.0 0.10197655424340957 1.0365901987366676E-4 42-43 7.176393683561546E-5 0.0010126688864581291 0.0 0.11901650235648847 1.0365901987366676E-4 44-45 7.973770759512828E-5 0.0011282885624710652 0.0 0.14338833268293943 1.0365901987366676E-4 46-47 8.771147835464111E-5 0.0012120131554459498 0.0 0.1708779073763599 1.0365901987366676E-4 48-49 8.771147835464111E-5 0.0012120131554459498 0.0 0.19534143606654525 1.1163279063317959E-4 50-51 9.169836373439753E-5 0.0012797902069018089 0.0 0.21834576470773975 1.1163279063317959E-4 52-53 9.568524911415394E-5 0.0012837770922815653 0.0 0.2502567952873101 1.2359344677244884E-4 54-55 9.568524911415394E-5 0.0012957377484208346 0.0 0.3133293219950566 1.3555410291171807E-4 56-57 9.568524911415394E-5 0.0013236459460791296 0.0 0.38026115375040725 1.3555410291171807E-4 58-59 9.568524911415394E-5 0.0013316197168386423 0.0 0.43640846055351684 1.3555410291171807E-4 60-61 9.967213449391034E-5 0.0013635147998766937 0.0 0.847113471063744 1.3555410291171807E-4 62-63 1.1960656139269242E-4 0.0013914229975349884 0.0 0.8578302189645293 1.3555410291171807E-4 64-65 1.1960656139269242E-4 0.001570832839624027 0.0 0.8679569078291106 1.3555410291171807E-4 66-67 1.435278736712309E-4 0.0015867803811430528 0.0 0.8767838720598913 1.3555410291171807E-4 68-69 1.435278736712309E-4 0.0016346230057001298 0.0 0.8856706395713683 1.3555410291171807E-4 70-71 1.4751475905098733E-4 0.0016705049741179375 0.0 0.894186626742528 1.5150164443074372E-4 72-73 1.5150164443074372E-4 0.0016904394010167196 0.0 0.9007530269629869 1.5947541519025657E-4 74-75 1.5548852981050014E-4 0.0017382820255737964 0.0 0.9065061025659754 1.5947541519025657E-4 76-77 1.6744918594976938E-4 0.0018100459624094119 0.0 0.9111707584602904 1.5947541519025657E-4 78-79 1.6744918594976938E-4 0.0018419410454474632 0.0 0.9158952176353017 1.5947541519025657E-4 80-81 1.6744918594976938E-4 0.0018618754723462453 0.0 0.9186979980572705 1.714360713295258E-4 82-83 1.6744918594976938E-4 0.0018738361284855146 0.0 0.9208788243599972 2.033311543675771E-4 84-85 1.6744918594976938E-4 0.0019216787530425916 0.0 0.9225453424487354 2.1529181050684637E-4 86-87 1.7940984208903864E-4 0.00194560006532113 0.0 0.9227725949153815 2.2326558126635918E-4 88-89 1.9137049822830787E-4 0.0020253377729162582 0.0 0.9228284113106981 2.2326558126635918E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13070 0.0 46.789627 1 GTATCAA 22945 0.0 34.48816 1 TCAACGC 28000 0.0 27.326529 4 ATCAACG 28385 0.0 27.030226 3 CAACGCA 28790 0.0 26.664639 5 AACGCAG 29465 0.0 26.082438 6 TATCAAC 30640 0.0 25.509916 2 GACCGAG 12035 0.0 23.365545 90-91 ACCGAGG 12245 0.0 23.17405 92-93 GAGACCG 11975 0.0 23.083784 88-89 CGAGACC 11740 0.0 23.037306 88-89 AGACCGA 11935 0.0 23.022331 90-91 ACGCAGA 34525 0.0 22.24756 7 ACGAGAC 12595 0.0 22.099567 86-87 CGCAGAG 34780 0.0 22.04804 8 GCCCACG 12645 0.0 21.357567 82-83 CCCACGA 12770 0.0 21.064497 84-85 CACGAGA 12980 0.0 20.902895 86-87 ATCTCCG 12735 0.0 20.785465 74-75 CCACGAG 13450 0.0 20.32003 84-85 >>END_MODULE