##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139822_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11896918 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03545044187074 33.0 31.0 34.0 30.0 34.0 2 32.19736430897481 33.0 31.0 34.0 30.0 34.0 3 32.26093665603142 34.0 31.0 34.0 30.0 34.0 4 35.91113849822282 37.0 35.0 37.0 35.0 37.0 5 35.79173749033153 37.0 35.0 37.0 35.0 37.0 6 35.80760857559916 37.0 35.0 37.0 35.0 37.0 7 35.695111204431264 37.0 35.0 37.0 33.0 37.0 8 35.683218292334196 37.0 35.0 37.0 33.0 37.0 9 37.27095210709194 39.0 37.0 39.0 34.0 39.0 10-11 37.1920378454319 39.0 37.0 39.0 33.0 39.0 12-13 37.15958128819582 39.0 37.0 39.0 33.0 39.0 14-15 38.363342926294024 40.0 38.0 41.0 33.0 41.0 16-17 38.36348258431301 40.0 38.0 41.0 33.0 41.0 18-19 38.40240215995437 40.0 38.0 41.0 33.5 41.0 20-21 38.37860213649859 40.0 38.0 41.0 34.0 41.0 22-23 38.2987509194749 40.0 38.0 41.0 33.5 41.0 24-25 38.22786287266187 40.0 38.0 41.0 33.0 41.0 26-27 38.067516495358845 40.0 37.0 41.0 33.0 41.0 28-29 37.96829327306857 40.0 37.0 41.0 33.0 41.0 30-31 37.85339365019644 40.0 37.0 41.0 33.0 41.0 32-33 38.020731798642956 40.0 37.0 41.0 33.0 41.0 34-35 38.00363641091795 40.0 37.0 41.0 33.0 41.0 36-37 37.928849641941525 40.0 37.0 41.0 33.0 41.0 38-39 37.755612215782975 40.0 37.0 41.0 33.0 41.0 40-41 37.78024042252278 40.0 37.0 41.0 33.0 41.0 42-43 37.75208867148858 40.0 37.0 41.0 33.0 41.0 44-45 37.73162132605678 40.0 37.0 41.0 33.0 41.0 46-47 37.75612230022443 40.0 37.0 41.0 33.0 41.0 48-49 37.680155383220225 40.0 37.0 41.0 32.0 41.0 50-51 37.59534746936761 40.0 36.5 41.0 32.0 41.0 52-53 37.46159013788646 39.5 36.0 41.0 32.0 41.0 54-55 37.37672429531622 39.0 36.0 41.0 31.5 41.0 56-57 37.24060495495663 39.0 36.0 41.0 31.0 41.0 58-59 37.10972808569651 39.0 35.5 40.5 31.0 41.0 60-61 36.91605957712372 39.0 35.0 40.0 31.0 41.0 62-63 36.687764859002854 38.0 35.0 40.0 31.0 41.0 64-65 36.51061895979278 38.0 35.0 40.0 31.0 41.0 66-67 36.22986470113417 37.5 35.0 40.0 30.0 41.0 68-69 35.9550929884318 37.0 34.0 40.0 30.0 41.0 70-71 35.66734129499268 36.5 34.0 39.0 30.0 41.0 72-73 35.3687241936793 36.0 34.0 39.0 30.0 40.5 74-75 35.01842871194676 36.0 34.0 38.5 29.0 40.0 76-77 33.92109036132874 35.0 32.5 37.0 28.0 39.0 78-79 34.211623853694334 35.0 33.0 37.0 29.0 39.0 80-81 34.07458337551395 35.0 33.0 37.0 29.0 39.0 82-83 33.84766177702242 35.0 33.0 36.0 29.0 38.5 84-85 33.63812310063706 35.0 33.0 36.0 29.0 37.0 86-87 33.43928606089738 35.0 33.0 35.0 29.0 37.0 88-89 33.220114980512164 35.0 33.0 35.0 29.0 36.5 90-91 33.12526939989756 35.0 33.0 35.0 29.0 36.0 92-93 33.06892205439623 35.0 33.0 35.0 29.0 36.0 94-95 33.01336157819472 34.0 33.0 35.0 29.0 35.5 96-97 32.92177725421334 34.0 32.0 35.0 29.0 35.0 98-99 33.03787354661805 34.0 32.5 35.0 29.0 35.0 100-101 32.57762599332 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 5.0 20 57.0 21 468.0 22 2057.0 23 7341.0 24 19349.0 25 40915.0 26 73943.0 27 116575.0 28 167094.0 29 222079.0 30 281260.0 31 349453.0 32 431956.0 33 542970.0 34 710580.0 35 965686.0 36 1444444.0 37 2372859.0 38 2869425.0 39 1227547.0 40 50852.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.86560519287433 22.282905539064824 15.47877357816537 24.372715689895482 2 13.762350720882155 22.75944520291974 41.04554768837072 22.432656387827386 3 16.793467141793002 27.587861919729384 31.71309414397323 23.905576794504384 4 12.050541156961827 19.769615962722444 39.52660680690579 28.65323607340994 5 12.587394483176231 38.29744812900282 36.44017719547197 12.674980192348976 6 28.527464003702473 39.60956947000896 19.19745937561308 12.665507150675495 7 25.011284435178926 33.08134089854196 24.456796289593658 17.450578376685456 8 23.53280067997443 37.43180376631998 21.94764223809898 17.087753315606612 9 24.968533867342785 16.736897741078824 21.810396608600648 36.48417178297774 10-11 23.364433544889526 27.258278152375265 29.928074649249492 19.449213653485717 12-13 24.29622108852057 24.823584561984877 29.776140341557365 21.104054007937183 14-15 21.503354902505002 26.285320282110035 27.135620334611033 25.07570448077393 16-17 21.223988431289513 29.3239307861078 27.849506905906217 21.602573876696468 18-19 21.28603811508157 28.5883789398229 29.30744332271602 20.818139622379512 20-21 21.957062621049364 27.79141865220091 29.12787969870963 21.1236390280401 22-23 21.699564563418416 27.820249667344477 28.94839072741011 21.531795041827 24-25 21.56279764289739 27.989702160128022 28.96795322255051 21.47954697442408 26-27 21.606033768221682 28.067500268681115 28.865673531513085 21.460792431584114 28-29 21.553002867219327 28.048027428086293 28.950974921477474 21.4479947832169 30-31 21.703077475666657 27.876653597718548 28.93998116541382 21.480287761200973 32-33 21.50106713425394 28.112654378269774 28.81870997718692 21.567568510289366 34-35 21.688275203367922 28.080222161185826 28.816035552161694 21.415467083284558 36-37 21.61584223502091 28.084711418679458 28.862805045843032 21.4366413004566 38-39 21.5614402963954 28.113476728329946 28.84705963070643 21.47802334456823 40-41 21.649606084336277 27.949659159533724 28.80181740228075 21.598917353849252 42-43 21.733088201916445 28.016426593935012 28.630134655922756 21.62035054822579 44-45 21.631552720478933 28.098316539237366 28.49767012729037 21.77246061299333 46-47 21.74264094923203 28.015872194459064 28.2419006720215 21.999586184287406 48-49 21.66216682377922 28.249440054793283 28.257793778807503 21.830599342619994 50-51 21.622354524756126 28.325274824754544 28.221263868146334 21.831106782342996 52-53 21.728168656932283 28.17656025194022 28.00022679485933 22.09504429626817 54-55 21.660229290048456 27.95205935421911 28.124440689434394 22.263270666298038 56-57 21.75357016679267 27.67243097533269 28.342535559300885 22.231463298573757 58-59 21.53162672383102 27.511416905686893 28.564660597517626 22.39229577296446 60-61 21.653839830844117 27.370291860610248 28.743203460093337 22.232664848452302 62-63 21.40261138842777 27.918401230065204 28.71635556607052 21.962631815436513 64-65 21.01157039765919 28.10561174205773 28.526555093860928 22.35626276642215 66-67 21.11350175161392 28.621050065294163 28.072031025411547 22.193417157680372 68-69 21.207594567156747 28.896898112654718 27.66962712092737 22.225880199261166 70-71 21.218163745242077 28.507314471355492 27.633966106625934 22.64055567677649 72-73 21.11015762856163 28.10344174374302 27.584561513300148 23.201839114395202 74-75 21.545195220937572 27.738900972980744 27.657703358578477 23.058200447503204 76-77 21.94658443445938 27.583462041167028 27.556397063042542 22.91355646133105 78-79 22.137844088102852 27.467027649300107 26.906604657796613 23.488523604800424 80-81 22.031099706892533 27.856509291721075 26.83425083812313 23.27814016326326 82-83 21.982611576953794 27.98108290711595 26.939886684481422 23.096418831448833 84-85 21.983470319789834 28.001135160064788 26.89809124937254 23.117303270772833 86-87 22.320102901879967 28.271653984674778 26.81560401385393 22.59263909959132 88-89 22.49605035072623 27.94786813017554 27.160842670608332 22.3952388484899 90-91 22.209631989466974 27.95695619130826 27.444463981757995 22.388947837466773 92-93 21.99284817916471 27.42925546557396 27.358338421816136 23.21955793344519 94-95 21.82986701207465 27.42881734566467 27.999555844627384 22.741759797633296 96-97 21.444683985634956 27.728405197764065 28.246521556011494 22.580389260589488 98-99 21.661313324296515 27.836416502316364 28.63892562731066 21.863344546076462 100-101 22.331276264422588 30.776491260271683 25.94563156125625 20.94660091404948 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2278.0 1 2080.0 2 2911.5 3 4200.5 4 5721.0 5 8865.0 6 11412.0 7 13221.5 8 14333.5 9 14156.5 10 13272.5 11 12528.5 12 14140.5 13 18728.5 14 29125.5 15 43475.5 16 54501.5 17 60128.5 18 61580.0 19 59948.0 20 56812.0 21 54471.5 22 55023.0 23 61228.0 24 73883.0 25 92567.5 26 116467.0 27 142447.5 28 170207.5 29 198141.0 30 223830.0 31 250279.0 32 277673.5 33 303709.0 34 328001.0 35 351496.0 36 378063.5 37 403457.0 38 425529.5 39 443737.0 40 459490.0 41 475809.0 42 484712.5 43 490364.5 44 498509.5 45 505560.0 46 508409.0 47 506201.5 48 503449.5 49 493880.5 50 477272.0 51 456546.0 52 430415.5 53 401183.0 54 368254.0 55 334600.5 56 300194.5 57 264993.5 58 231186.0 59 196889.5 60 162330.0 61 131031.0 62 103245.0 63 78627.5 64 57725.0 65 42489.5 66 31838.5 67 24237.5 68 18722.5 69 13743.0 70 9719.5 71 7027.0 72 5036.0 73 3597.0 74 2527.0 75 1741.0 76 1219.0 77 827.0 78 562.5 79 391.5 80 274.0 81 199.5 82 156.0 83 109.5 84 68.0 85 48.0 86 35.0 87 25.0 88 18.5 89 14.0 90 10.5 91 8.5 92 6.5 93 3.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002050951347231274 3 1.0086645969989876E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0021350843490709924 22-23 3.7409945539105687E-4 24-25 0.001151983252686097 26-27 0.011154017252640215 28-29 2.3564170896961327E-4 30-31 0.0024012383312455197 32-33 0.002537865930919205 34-35 0.0015675460020734822 36-37 0.06402199914918301 38-39 0.029553616922879465 40-41 0.026338966739905587 42-43 0.0035844931873799456 44-45 0.001685525065355687 46-47 0.0035780775215041795 48-49 0.0028098100340594543 50-51 7.348472689829534E-4 52-53 0.0010259229856864679 54-55 0.001527849420981447 56-57 0.01164768402406939 58-59 0.008597280256779406 60-61 0.004618327318817246 62-63 0.002648218399497357 64-65 0.0012539337492525524 66-67 5.395595859078963E-4 68-69 0.0016623504639107546 70-71 5.33371839547592E-5 72-73 7.115897705584297E-4 74-75 2.284593387572229E-4 76-77 0.005496171536871366 78-79 0.0014822820684976298 80-81 5.474270386918848E-4 82-83 4.3984278133954436E-4 84-85 0.0026116917583713746 86-87 0.0031122025477416182 88-89 0.04043732673622441 90-91 4.0581608948500494E-4 92-93 3.8492500104297695E-4 94-95 1.9632414224538694E-4 96-97 0.019991231105621107 98-99 1.9193857965451054E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 262.0 20-21 997.0 22-23 2057.0 24-25 4259.0 26-27 5309.0 28-29 9208.0 30-31 26242.0 32-33 35445.0 34-35 50507.0 36-37 77884.0 38-39 54445.0 40-41 85832.0 42-43 96423.0 44-45 113733.0 46-47 114665.0 48-49 104586.0 50-51 95786.0 52-53 18755.0 54-55 19105.0 56-57 19468.0 58-59 20683.0 60-61 114057.0 62-63 112222.0 64-65 118174.0 66-67 128794.0 68-69 124789.0 70-71 124647.0 72-73 120619.0 74-75 123959.0 76-77 125009.0 78-79 133888.0 80-81 133605.0 82-83 129962.0 84-85 131516.0 86-87 138428.0 88-89 148463.0 90-91 159746.0 92-93 167340.0 94-95 207089.0 96-97 266619.0 98-99 1076852.0 100-101 7155489.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.3913576554401 #Duplication Level Percentage of deduplicated Percentage of total 1 89.17745458327788 75.25806464539168 2 7.50806751110277 12.672320212613275 3 1.8916627400276598 4.789199605714321 4 0.6468065882679409 2.1833954449765915 5 0.31901917064016266 1.3461230464217921 6 0.15224095073577792 0.7708692314008363 7 0.0845556713532854 0.4995037532079672 8 0.05842265588283075 0.3944293798230938 9 0.03485910001964794 0.26476260995743817 >10 0.12417118239995001 1.6268967002586479 >50 0.0024251872178499417 0.1340253919164892 >100 2.819052067450643E-4 0.044074515445021945 >500 3.275386742444005E-5 0.016335462872802003 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.405538308324895E-6 0.0 8.405538308324895E-6 0.0 3 0.0 8.405538308324895E-6 0.0 8.405538308324895E-6 0.0 4 0.0 4.202769154162448E-5 0.0 3.362215323329958E-5 0.0 5 0.0 5.043322984994937E-5 0.0 5.043322984994937E-5 0.0 6 0.0 5.043322984994937E-5 0.0 5.043322984994937E-5 0.0 7 0.0 5.043322984994937E-5 0.0 6.724430646659916E-5 0.0 8 0.0 5.883876815827427E-5 0.0 7.564984477492407E-5 8.405538308324895E-6 9 0.0 8.405538308324895E-5 0.0 1.3448861293319833E-4 8.405538308324895E-6 10-11 0.0 8.405538308324895E-5 0.0 1.7231353532066036E-4 8.405538308324895E-6 12-13 0.0 8.82581522374114E-5 0.0 1.849218427831477E-4 8.405538308324895E-6 14-15 0.0 1.5129968954984813E-4 0.0 1.933273810914726E-4 1.2608307462487343E-5 16-17 0.0 1.8071907362898526E-4 0.0 2.3535507263309707E-4 1.681107661664979E-5 18-19 0.0 1.8912461193731016E-4 0.0 2.6057168755807175E-4 1.681107661664979E-5 20-21 0.0 1.933273810914726E-4 0.0 3.446270706413207E-4 1.681107661664979E-5 22-23 0.0 2.2274676517060972E-4 0.0 6.0099598904523E-4 2.101384577081224E-5 24-25 0.0 2.6057168755807175E-4 0.0 0.0012944528994820338 2.5216614924974686E-5 26-27 0.0 2.7738276417472156E-4 0.0 0.003669017471583817 2.5216614924974686E-5 28-29 0.0 2.7738276417472156E-4 0.0 0.018462764894235633 2.5216614924974686E-5 30-31 0.0 3.110049174080211E-4 0.0 0.029419384079137134 2.5216614924974686E-5 32-33 0.0 3.110049174080211E-4 0.0 0.041989866619237017 3.362215323329958E-5 34-35 0.0 3.5723537810380805E-4 0.0 0.0587463072368827 3.362215323329958E-5 36-37 0.0 4.03465838799595E-4 0.0 0.08046201545644006 3.362215323329958E-5 38-39 0.0 4.202769154162448E-4 0.0 0.12623437431442328 3.362215323329958E-5 40-41 0.0 4.6230460695786924E-4 0.0 0.41968852773466203 3.362215323329958E-5 42-43 0.0 4.7071014526619415E-4 0.0 0.46080842113898746 3.362215323329958E-5 44-45 0.0 5.085350676536562E-4 0.0 0.5278215753021076 3.362215323329958E-5 46-47 0.0 5.379544517327933E-4 0.0 0.6056652655755045 3.362215323329958E-5 48-49 0.0 5.463599900411183E-4 0.0 0.6704383437794561 3.362215323329958E-5 50-51 0.0 5.547655283494431E-4 0.0 0.7321560088083316 3.362215323329958E-5 52-53 0.0 5.547655283494431E-4 0.0 0.9444841092457728 3.782492238746203E-5 54-55 0.0 5.589682975036055E-4 0.0 1.6556767055131423 4.202769154162448E-5 56-57 0.0 5.63171066657768E-4 0.0 2.4412583158091867 4.202769154162448E-5 58-59 0.0 5.715766049660929E-4 0.0 3.2558096138848733 4.202769154162448E-5 60-61 0.0 5.757793741202554E-4 0.0 3.871796880503001 4.202769154162448E-5 62-63 0.0 5.883876815827427E-4 0.0 3.8885196989674133 5.883876815827427E-5 64-65 0.0 6.724430646659916E-4 0.0 3.899026621852819 5.883876815827427E-5 66-67 0.0 6.85051372128479E-4 0.0 3.9077137456944735 5.883876815827427E-5 68-69 0.0 7.018624487451288E-4 0.0 3.915312352325199 5.883876815827427E-5 70-71 0.0 7.144707562076161E-4 0.0 3.922301557428571 6.724430646659916E-5 72-73 0.0 7.22876294515941E-4 0.0 3.928097176092161 7.564984477492407E-5 74-75 0.0 7.354846019784284E-4 0.0 3.933552370454264 7.564984477492407E-5 76-77 0.0 7.775122935200528E-4 0.0 3.9386839515914964 7.564984477492407E-5 78-79 0.0 8.0693167759919E-4 0.0 3.9434835139655497 7.564984477492407E-5 80-81 0.0 8.0693167759919E-4 0.0 3.946227922223218 7.564984477492407E-5 82-83 0.0 8.0693167759919E-4 0.0 3.948283076339603 9.246092139157386E-5 84-85 0.0 8.363510616783271E-4 0.0 3.9500776587684308 9.246092139157386E-5 86-87 0.0 8.489593691408144E-4 0.0 3.950443299684843 9.246092139157386E-5 88-89 0.0 8.909870606824389E-4 0.0 3.9504685162997677 1.0086645969989875E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12650 0.0 45.044292 1 GTATCAA 21760 0.0 34.770786 1 TATCTCG 16885 0.0 28.855282 94-95 TCAACGC 26360 0.0 27.988466 4 ATCAACG 26820 0.0 27.60405 3 CAACGCA 27280 0.0 27.044573 5 AACGCAG 28060 0.0 26.308033 6 TATCAAC 28500 0.0 26.157833 2 ACGCAGA 32810 0.0 22.460258 7 CGCAGAG 33030 0.0 22.284777 8 GCTATCT 25285 0.0 21.481068 94-95 CTATCTC 25640 0.0 20.802183 94-95 CCGTCTT 8730 0.0 20.467121 92-93 TATGCCG 8480 0.0 20.273548 88-89 TGCCGTC 8930 0.0 19.34517 90-91 GTACATG 29105 0.0 19.328068 1 GCCGTCT 8765 0.0 19.29658 90-91 CGCTATC 25095 0.0 18.710571 92-93 ATGCCGT 8895 0.0 18.567787 88-89 TACATGG 29680 0.0 18.56475 2 >>END_MODULE