##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139820_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11066186 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02703207771856 33.0 31.0 34.0 30.0 34.0 2 32.192450858859594 33.0 31.0 34.0 30.0 34.0 3 32.2545245489277 34.0 31.0 34.0 30.0 34.0 4 35.90949483408286 37.0 35.0 37.0 35.0 37.0 5 35.791020140091625 37.0 35.0 37.0 35.0 37.0 6 35.80602747866338 37.0 35.0 37.0 35.0 37.0 7 35.693807333439004 37.0 35.0 37.0 33.0 37.0 8 35.68180717367302 37.0 35.0 37.0 33.0 37.0 9 37.26983244272236 39.0 37.0 39.0 33.0 39.0 10-11 37.19117060747036 39.0 37.0 39.0 33.0 39.0 12-13 37.16005374390056 39.0 37.0 39.0 33.0 39.0 14-15 38.364045073885435 40.0 38.0 41.0 33.0 41.0 16-17 38.36636235826869 40.0 38.0 41.0 33.0 41.0 18-19 38.40765720908722 40.0 38.0 41.0 33.5 41.0 20-21 38.385715959151526 40.0 38.0 41.0 34.0 41.0 22-23 38.30431845662675 40.0 38.0 41.0 33.5 41.0 24-25 38.23746434728297 40.0 38.0 41.0 33.0 41.0 26-27 38.0818212633925 40.0 37.0 41.0 33.0 41.0 28-29 37.98452487596646 40.0 37.0 41.0 33.0 41.0 30-31 37.87222656989107 40.0 37.0 41.0 33.0 41.0 32-33 38.03321533224893 40.0 37.0 41.0 33.0 41.0 34-35 38.01597797214711 40.0 37.0 41.0 33.0 41.0 36-37 37.94282214579363 40.0 37.0 41.0 33.0 41.0 38-39 37.77003358906187 40.0 37.0 41.0 33.0 41.0 40-41 37.793565768965436 40.0 37.0 41.0 33.0 41.0 42-43 37.76614548224238 40.0 37.0 41.0 33.0 41.0 44-45 37.7498642707294 40.0 37.0 41.0 33.0 41.0 46-47 37.77661243564398 40.0 37.0 41.0 33.0 41.0 48-49 37.70054989194995 40.0 37.0 41.0 32.0 41.0 50-51 37.62481238759657 40.0 37.0 41.0 32.0 41.0 52-53 37.490416433126654 39.5 36.0 41.0 32.0 41.0 54-55 37.39805925614401 39.0 36.0 41.0 31.5 41.0 56-57 37.26624790429994 39.0 36.0 41.0 31.0 41.0 58-59 37.131152555022226 39.0 35.5 40.5 31.0 41.0 60-61 36.93636768683037 39.0 35.0 40.0 31.0 41.0 62-63 36.705438775615704 38.0 35.0 40.0 31.0 41.0 64-65 36.50568676821439 38.0 35.0 40.0 31.0 41.0 66-67 36.219270657192055 37.5 35.0 40.0 30.0 41.0 68-69 35.944267150856554 37.0 34.0 40.0 30.0 41.0 70-71 35.660812236365516 36.5 34.0 39.0 30.0 41.0 72-73 35.36227146112853 36.0 34.0 39.0 30.0 40.5 74-75 35.02634074219603 36.0 34.0 38.5 29.0 40.0 76-77 33.96079047573497 35.0 32.5 37.0 28.5 39.0 78-79 34.28055294339054 35.0 33.0 37.0 29.0 39.0 80-81 34.16743904130908 35.0 33.0 37.0 29.0 39.0 82-83 33.94882121486371 35.0 33.0 36.0 29.0 38.5 84-85 33.727751034960434 35.0 33.0 36.0 29.0 37.0 86-87 33.511232439345086 35.0 33.0 35.5 29.0 37.0 88-89 33.29370655262396 35.0 33.0 35.0 29.0 36.5 90-91 33.18219679507739 35.0 33.0 35.0 29.0 36.0 92-93 33.10354661993783 35.0 33.0 35.0 29.0 36.0 94-95 33.0501541191434 34.0 33.0 35.0 29.0 36.0 96-97 32.97354980888077 34.0 33.0 35.0 29.0 35.0 98-99 33.09192813258352 34.0 33.0 35.0 29.0 35.0 100-101 32.62825258852888 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 4.0 19 11.0 20 66.0 21 367.0 22 1872.0 23 6448.0 24 16949.0 25 36199.0 26 65378.0 27 103694.0 28 149197.0 29 199746.0 30 255026.0 31 319577.0 32 398465.0 33 502842.0 34 658001.0 35 895272.0 36 1332633.0 37 2171963.0 38 2625053.0 39 1277309.0 40 50113.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.94550353662951 22.318927225694562 15.528240714551517 24.207328523124406 2 13.80353836225971 22.841130829325625 41.0283981508349 22.326932657579768 3 16.766463223985152 27.662345994733506 31.772806876446975 23.79838390483437 4 12.09171795955716 19.70009360045096 39.69016967544193 28.51801876454995 5 12.592233674727678 38.34354492143906 36.43390776189737 12.630313641935894 6 28.52027789881717 39.669638663221455 19.205939607376923 12.60414383058445 7 24.96864773463956 33.19620689549227 24.643377582845616 17.191767787022556 8 23.471600784588293 37.63171882345011 21.91887972965573 16.977800662305874 9 24.967789263618016 16.830965971473823 21.959029063852714 36.24221570105545 10-11 23.33658136597379 27.35176780871025 29.981092853490804 19.33055797182516 12-13 24.2555745945351 24.924730164484853 29.86992537446958 20.94976986651047 14-15 21.480187482841874 26.386954818941234 27.26118104286337 24.871676655353525 16-17 21.151180722969958 29.404995542276264 27.952006228704267 21.49181750604951 18-19 21.20413934846206 28.67656028915473 29.453512709799025 20.66578765258419 20-21 21.934437466576988 27.891144966457816 29.278609702145197 20.895807864820004 22-23 21.66611618917621 27.829192581247476 29.117739204536903 21.386952025039413 24-25 21.521090305821367 27.951801205986833 29.141263212628584 21.385845275563216 26-27 21.521051813796717 28.06588343057913 29.0279601934075 21.385104562216657 28-29 21.50909713125835 28.087591830027627 29.075453454025173 21.327857584688847 30-31 21.71112120288967 27.979316132261694 28.98666941485175 21.322893249996884 32-33 21.520444286293213 28.130422636164308 28.937725045361006 21.411408032181477 34-35 21.639686168263797 28.154462104210058 28.90141670055688 21.30443502696926 36-37 21.625060904220653 28.095131304574707 28.88269073987833 21.39711705132631 38-39 21.556002059039482 28.1982080599522 28.898671740550324 21.34711814045799 40-41 21.725636239238334 28.060287456104366 28.814326746517853 21.399749558139444 42-43 21.61761888839354 28.17501190395195 28.628890897242616 21.578478310411896 44-45 21.731706075493072 28.238887785768092 28.464130820663108 21.56527531807573 46-47 21.766010258855843 28.21202559242635 28.281953440209755 21.740010708508056 48-49 21.713467242719823 28.307355032125415 28.239423658363823 21.739754066790944 50-51 21.7139759377993 28.402197559856674 28.143462016560072 21.740364485783957 52-53 21.869588888792105 28.295360420207228 28.069611044435845 21.765439646564825 54-55 21.856803100438515 28.24950054373703 28.095970703466676 21.797725652357776 56-57 21.84454866647844 28.313448854581956 28.07294213034035 21.76906034859925 58-59 21.834666238735746 28.35172006014431 28.01463823996233 21.79897546115761 60-61 21.867010065283296 28.334676474940956 28.08068507347363 21.717628386302117 62-63 21.884160656818217 28.372895888265976 28.021644674960534 21.721298779955266 64-65 21.87144969743689 28.308302320880514 27.997736390155726 21.822511591526872 66-67 21.880717788159053 28.341125643417413 27.9231220140991 21.855034554324433 68-69 21.85160201059986 28.301992621286242 27.975415858898867 21.870989509215036 70-71 21.85582609984005 28.146375700712177 28.033818137999095 21.963980061448673 72-73 21.896082069294355 28.133144011568344 27.99911245816043 21.97166146097687 74-75 21.79164277523334 28.243749231589838 27.954763120778882 22.00984487239794 76-77 21.899038111304705 28.18670105946647 27.90525223933568 22.009008589893146 78-79 21.84535744700519 28.201241135711726 27.88485063634008 22.068550780943006 80-81 21.891806156361802 28.170646999436933 27.911599180483293 22.025947663717975 82-83 21.879301229986204 28.150202965892586 27.976659215401728 21.993836588719482 84-85 21.922830369640035 28.15161084877727 27.964605998168103 21.96095278341459 86-87 21.855445591827966 28.13999681209417 27.994563680106914 22.00999391597095 88-89 21.914759198947774 28.044961575033188 28.00163530044052 22.03864392557852 90-91 21.91709899726863 28.053963426764394 28.036622673871868 21.992314902095107 92-93 21.948412970683545 27.98149092523687 28.04360974517206 22.026486358907526 94-95 21.796681117867077 27.999040179856326 28.128706448322678 22.075572253953922 96-97 21.77969349790174 28.02773009965886 28.190374941641256 22.002201460798148 98-99 21.97146934888928 28.649165304450474 28.250512804462936 21.12885254219731 100-101 22.513970652402055 31.32579554407816 25.486100528706228 20.674133274813553 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2535.0 1 2194.5 2 2800.5 3 3961.5 4 5150.5 5 7790.0 6 10174.0 7 12160.0 8 13497.5 9 13483.0 10 12712.0 11 12000.5 12 13297.0 13 17520.0 14 27216.0 15 40630.0 16 51229.5 17 56881.0 18 58664.5 19 57764.0 20 55841.5 21 54944.5 22 57297.5 23 65020.5 24 79118.5 25 99708.0 26 124903.5 27 150192.0 28 175618.0 29 202116.5 30 226934.0 31 252420.0 32 278750.0 33 304452.5 34 330225.0 35 353115.5 36 377264.5 37 399146.5 38 415413.5 39 429507.0 40 441099.5 41 451972.5 42 459511.0 43 464145.5 44 466791.0 45 467190.0 46 465143.0 47 459178.0 48 451069.0 49 440590.5 50 427112.5 51 408737.5 52 385710.0 53 360624.5 54 334752.0 55 308579.5 56 281925.0 57 254223.0 58 224305.5 59 192701.5 60 160807.5 61 130527.5 62 103001.0 63 79221.5 64 59115.0 65 43997.0 66 33110.0 67 25200.5 68 19398.0 69 14200.5 70 10220.0 71 7513.5 72 5317.5 73 3581.0 74 2454.0 75 1742.5 76 1190.5 77 774.0 78 504.5 79 340.0 80 232.0 81 169.0 82 122.0 83 84.5 84 67.5 85 56.0 86 41.5 87 31.0 88 24.5 89 16.0 90 9.5 91 7.5 92 6.0 93 3.5 94 1.0 95 0.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019790016180823273 3 5.421922241321446E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0022953612060369988 22-23 4.383315024331917E-4 24-25 0.0011796850638627707 26-27 0.011566139371889 28-29 3.438467804268659E-4 30-31 0.0025729598319748515 32-33 0.0027245833158505905 34-35 0.0017449776649693 36-37 0.0643229352905502 38-39 0.029011693220367122 40-41 0.026094048861234245 42-43 0.003389977008557866 44-45 0.0016542599533394709 46-47 0.0035263722712842965 48-49 0.002999013078401446 50-51 7.168894372144817E-4 52-53 9.89169333979E-4 54-55 0.0013460377441897487 56-57 0.011772021407616629 58-59 0.008956127350248073 60-61 0.004638967366889317 62-63 0.002626234194097562 64-65 0.0011200681671392936 66-67 5.505032181677072E-4 68-69 0.0017249701210532602 70-71 4.880836280319009E-5 72-73 6.971612308310167E-4 74-75 3.2777985371685133E-4 76-77 0.005456317146802887 78-79 0.00153303083044679 80-81 5.548021740154356E-4 82-83 4.571546996265046E-4 84-85 0.002513698468141457 86-87 0.0030624178633004186 88-89 0.03969080477376976 90-91 3.050966963507073E-4 92-93 4.248614999069426E-4 94-95 1.8756557923258382E-4 96-97 0.018168602240807543 98-99 2.700421286493165E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 226.0 20-21 895.0 22-23 1844.0 24-25 3841.0 26-27 5806.0 28-29 10044.0 30-31 25151.0 32-33 33422.0 34-35 47833.0 36-37 75045.0 38-39 79287.0 40-41 82021.0 42-43 95033.0 44-45 112817.0 46-47 113206.0 48-49 103224.0 50-51 93860.0 52-53 91717.0 54-55 100482.0 56-57 105007.0 58-59 104948.0 60-61 103459.0 62-63 98373.0 64-65 105007.0 66-67 111824.0 68-69 113858.0 70-71 112557.0 72-73 108094.0 74-75 110661.0 76-77 113358.0 78-79 120951.0 80-81 121711.0 82-83 117647.0 84-85 118244.0 86-87 124957.0 88-89 134307.0 90-91 143992.0 92-93 149405.0 94-95 183290.0 96-97 237228.0 98-99 887715.0 100-101 6463839.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.20420292947325 #Duplication Level Percentage of deduplicated Percentage of total 1 91.06464263826558 79.41219576327273 2 6.40990399647902 11.17941137734796 3 1.4313205644276443 3.7445150687242945 4 0.517142342443589 1.8038794309549557 5 0.23820358043111214 1.0386176683220902 6 0.11814784417672967 0.6181793147560392 7 0.0642371339564732 0.3921223645603632 8 0.03937474854113472 0.27469148496624746 9 0.02706534513122623 0.21241906642617145 >10 0.08828318671376538 1.188640571329623 >50 0.0014560526409665285 0.08363079567940541 >100 1.9110910816993662E-4 0.035512099411277497 >500 3.145768453345422E-5 0.01618499424884727 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.036537068869076E-6 2 0.0 3.6146148275476305E-5 0.0 0.0 9.036537068869076E-6 3 0.0 3.6146148275476305E-5 0.0 0.0 9.036537068869076E-6 4 0.0 6.325575948208352E-5 0.0 9.036537068869076E-6 9.036537068869076E-6 5 0.0 6.325575948208352E-5 0.0 9.036537068869076E-6 9.036537068869076E-6 6 2.710961120660723E-5 6.325575948208352E-5 0.0 1.8073074137738152E-5 9.036537068869076E-6 7 2.710961120660723E-5 7.229229655095261E-5 0.0 2.710961120660723E-5 9.036537068869076E-6 8 2.710961120660723E-5 7.229229655095261E-5 0.0 2.710961120660723E-5 9.036537068869076E-6 9 2.710961120660723E-5 1.5362113017077428E-4 0.0 7.229229655095261E-5 2.710961120660723E-5 10-11 5.421922241321446E-5 1.5362113017077428E-4 0.0 1.0392017629199437E-4 2.710961120660723E-5 12-13 6.325575948208352E-5 1.5362113017077428E-4 0.0 1.1747498189529799E-4 2.710961120660723E-5 14-15 6.777402801651807E-5 2.485047693938996E-4 0.0 1.310297874986016E-4 2.710961120660723E-5 16-17 9.940190775755983E-5 2.7109611206607226E-4 0.0 1.6265766723964336E-4 2.710961120660723E-5 18-19 1.0843844482642891E-4 2.846509176693759E-4 0.0 1.807307413773815E-4 2.710961120660723E-5 20-21 1.0843844482642891E-4 2.982057232726795E-4 0.0 2.168768896528578E-4 2.710961120660723E-5 22-23 1.0843844482642891E-4 3.433884086170249E-4 0.0 2.394682323250305E-4 3.162787974104177E-5 24-25 1.0843844482642891E-4 3.659797512891976E-4 0.0 2.7109611206607226E-4 3.6146148275476305E-5 26-27 1.0843844482642891E-4 3.795345568925012E-4 0.0 3.343518715481558E-4 3.6146148275476305E-5 28-29 1.0843844482642891E-4 3.930893624958048E-4 0.0 7.72623919388306E-4 3.6146148275476305E-5 30-31 1.0843844482642891E-4 4.6086339051232283E-4 0.0 0.0019383372012724167 3.6146148275476305E-5 32-33 1.1747498189529799E-4 4.7441819611562645E-4 0.0 0.004360129135729329 3.6146148275476305E-5 34-35 1.1747498189529799E-4 5.557470297354481E-4 0.0 0.00772623919388306 5.421922241321446E-5 36-37 1.1747498189529799E-4 6.280393262864007E-4 0.0 0.012691816313226616 5.421922241321446E-5 38-39 1.1747498189529799E-4 6.506306689585735E-4 0.0 0.019997856533407264 5.421922241321446E-5 40-41 1.1747498189529799E-4 7.138864284406569E-4 0.0 0.027724095727290322 6.325575948208352E-5 42-43 1.1747498189529799E-4 7.500325767161333E-4 0.0 0.03479066771514594 6.777402801651807E-5 44-45 1.2651151896416705E-4 8.675075586114312E-4 0.0 0.04400341725685796 7.229229655095261E-5 46-47 1.3554805603303613E-4 9.533546607656874E-4 0.0 0.05395716283821725 7.229229655095261E-5 48-49 1.3554805603303613E-4 9.57872929300122E-4 0.0 0.06350426425147743 8.132883361982168E-5 50-51 1.3554805603303613E-4 0.0010120921517133364 0.0 0.07307847527594422 8.584710215425622E-5 52-53 1.3554805603303613E-4 0.0010211286887822056 0.0 0.08195235467757364 9.940190775755984E-5 54-55 1.3554805603303613E-4 0.00102564695731664 0.0 0.09143168206281731 1.1295671336086346E-4 56-57 1.3554805603303613E-4 0.0010301652258510746 0.0 0.09997572786143302 1.1747498189529799E-4 58-59 1.3554805603303613E-4 0.0010301652258510746 0.0 0.10768841224971278 1.1747498189529799E-4 60-61 1.4458459310190522E-4 0.0010392017629199438 0.0 0.11462847271860421 1.1747498189529799E-4 62-63 1.4458459310190522E-4 0.0010934209853331583 0.0 0.12164082548404662 1.2651151896416705E-4 64-65 1.4458459310190522E-4 0.0011747498189529798 0.0 0.12873450708310885 1.310297874986016E-4 66-67 1.4458459310190522E-4 0.0011792680874874143 0.0 0.1360947665257027 1.3554805603303613E-4 68-69 1.4458459310190522E-4 0.0011883046245562835 0.0 0.14421409508208158 1.3554805603303613E-4 70-71 1.5362113017077428E-4 0.0011973411616251525 0.0 0.1514478430057113 1.3554805603303613E-4 72-73 1.897672784462506E-4 0.0012108959672284562 0.0 0.1575836516754734 1.3554805603303613E-4 74-75 1.9880381551511965E-4 0.0012289690413661942 0.0 0.16309142101894908 1.3554805603303613E-4 76-77 1.9880381551511965E-4 0.0012651151896416707 0.0 0.16830550290768653 1.3554805603303613E-4 78-79 1.9880381551511965E-4 0.0012967430693827124 0.0 0.17351506652788956 1.3554805603303613E-4 80-81 1.9880381551511965E-4 0.0013057796064515814 0.0 0.1765423064459607 1.4458459310190522E-4 82-83 1.9880381551511965E-4 0.0013148161435204506 0.0 0.17856649074938735 1.5362113017077428E-4 84-85 1.9880381551511965E-4 0.0013464440232614922 0.0 0.18031957894074796 1.5362113017077428E-4 86-87 2.0332208404955418E-4 0.0013599988288647959 0.0 0.18057712024721073 1.5813939870520883E-4 88-89 2.0784035258398874E-4 0.0014096997827435758 0.0 0.18061326639548622 1.6265766723964336E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12195 0.0 47.259926 1 GTATCAA 20805 0.0 32.70541 1 TCAACGC 24920 0.0 26.562944 4 ATCAACG 25355 0.0 26.123774 3 CAACGCA 25675 0.0 25.716438 5 AACGCAG 26480 0.0 24.93465 6 TATCAAC 27300 0.0 24.447742 2 ACGCAGA 30505 0.0 21.658394 7 CGCAGAG 30910 0.0 21.361032 8 GTACATG 26490 0.0 18.032858 1 GAGTACT 21935 0.0 17.60527 12-13 AGAGTAC 33285 0.0 17.60473 10-11 GCAGAGT 37630 0.0 17.390194 9 TACATGG 26915 0.0 17.327024 2 CAGAGTA 36145 0.0 16.844652 10-11 ACATGGG 27005 0.0 16.569351 3 AGTACTT 24920 0.0 15.269061 12-13 GTACTTT 25610 0.0 15.112743 14-15 GTGGTAT 6570 0.0 14.694904 1 TGGTATC 6045 0.0 14.512903 2 >>END_MODULE