##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139819_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10785791 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00994984976067 33.0 31.0 34.0 30.0 34.0 2 32.17025380892324 33.0 31.0 34.0 30.0 34.0 3 32.22588867149382 34.0 31.0 34.0 30.0 34.0 4 35.89045689833968 37.0 35.0 37.0 35.0 37.0 5 35.767061683283124 37.0 35.0 37.0 35.0 37.0 6 35.7850487738915 37.0 35.0 37.0 33.0 37.0 7 35.6724172571117 37.0 35.0 37.0 33.0 37.0 8 35.65921006628072 37.0 35.0 37.0 33.0 37.0 9 37.23900157160472 39.0 37.0 39.0 33.0 39.0 10-11 37.15724206041077 39.0 37.0 39.0 33.0 39.0 12-13 37.11991216035987 39.0 37.0 39.0 33.0 39.0 14-15 38.29836476527312 40.0 38.0 41.0 33.0 41.0 16-17 38.29903161483474 40.0 38.0 41.0 33.0 41.0 18-19 38.34294188530076 40.0 38.0 41.0 33.5 41.0 20-21 38.31929897917725 40.0 38.0 41.0 33.5 41.0 22-23 38.23880640375391 40.0 38.0 41.0 33.0 41.0 24-25 38.16028813066664 40.0 37.5 41.0 33.0 41.0 26-27 37.9890891427964 40.0 37.0 41.0 33.0 41.0 28-29 37.88506687737235 40.0 37.0 41.0 33.0 41.0 30-31 37.76406655164209 40.0 37.0 41.0 32.5 41.0 32-33 37.933650918906224 40.0 37.0 41.0 33.0 41.0 34-35 37.92277465179401 40.0 37.0 41.0 33.0 41.0 36-37 37.84630491302771 40.0 37.0 41.0 33.0 41.0 38-39 37.65959087964069 40.0 37.0 41.0 32.0 41.0 40-41 37.68213120425067 40.0 37.0 41.0 33.0 41.0 42-43 37.65107128579 40.0 37.0 41.0 32.5 41.0 44-45 37.62816336679414 40.0 37.0 41.0 32.5 41.0 46-47 37.648887027668245 40.0 37.0 41.0 32.0 41.0 48-49 37.56868645397111 40.0 36.5 41.0 32.0 41.0 50-51 37.48314239533866 39.5 36.0 41.0 32.0 41.0 52-53 37.34249052242673 39.0 36.0 41.0 31.0 41.0 54-55 37.23496302715476 39.0 36.0 41.0 31.0 41.0 56-57 37.089867785053755 39.0 35.0 40.5 31.0 41.0 58-59 36.93853156971477 39.0 35.0 40.0 31.0 41.0 60-61 36.729639243549784 38.5 35.0 40.0 31.0 41.0 62-63 36.48276837797757 38.0 35.0 40.0 31.0 41.0 64-65 36.266808163857 38.0 35.0 40.0 30.0 41.0 66-67 35.97152490324201 37.0 34.0 40.0 30.0 41.0 68-69 35.68267162673361 37.0 34.0 39.0 30.0 41.0 70-71 35.39112381079775 36.0 34.0 39.0 29.0 40.5 72-73 35.09128334993561 36.0 34.0 39.0 29.0 40.0 74-75 34.758941692177444 35.0 34.0 38.0 29.0 40.0 76-77 33.717432922787836 35.0 32.5 37.0 28.0 39.0 78-79 34.0558825235394 35.0 33.0 37.0 29.0 39.0 80-81 33.96166581013932 35.0 33.0 36.0 29.0 39.0 82-83 33.76096656636661 35.0 33.0 36.0 29.0 37.5 84-85 33.55659475515425 35.0 33.0 36.0 29.0 37.0 86-87 33.36704046912382 35.0 33.0 35.0 29.0 37.0 88-89 33.16549010618806 35.0 33.0 35.0 29.0 36.0 90-91 33.07166576969703 35.0 33.0 35.0 29.0 36.0 92-93 33.008148068588106 34.5 33.0 35.0 29.0 36.0 94-95 32.96566346293977 34.0 33.0 35.0 29.0 35.5 96-97 32.89362240592437 34.0 32.0 35.0 29.0 35.0 98-99 33.02203001052143 34.0 32.5 35.0 29.0 35.0 100-101 32.561796794039 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 0.0 14 1.0 15 0.0 16 0.0 17 1.0 18 3.0 19 20.0 20 99.0 21 460.0 22 2127.0 23 7119.0 24 18505.0 25 38689.0 26 69183.0 27 107795.0 28 154505.0 29 204217.0 30 260128.0 31 322787.0 32 399986.0 33 506429.0 34 666236.0 35 910430.0 36 1367207.0 37 2186814.0 38 2416827.0 39 1104816.0 40 41405.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.281179377571846 21.998896511159913 15.592829492060433 24.12709461920781 2 14.137704646875632 22.674686996753355 40.43013498286742 22.757473373503593 3 16.931164638177734 27.624689880999785 31.588492588249768 23.85565289257271 4 12.440710189915603 19.384011798485616 38.858513019582894 29.316764992015887 5 12.838529876946438 38.34329814104501 35.85894627477948 12.959225707229075 6 29.090216934483525 38.97061420900887 18.862955901889812 13.076212954617795 7 25.456232185474388 33.11853530260321 24.064530825787372 17.360701686135027 8 24.268855200327913 36.900112379333144 21.485044536835545 17.345987883503398 9 25.56076786579677 16.464040514042967 21.389798856662438 36.58539276349783 10-11 23.922357664820318 26.993588138320128 29.317886838341295 19.766167358518256 12-13 24.799520962347593 24.648164422989467 29.303372372040215 21.248942242622725 14-15 22.07362445647241 25.915887856532727 26.77704861887274 25.233439068122127 16-17 21.58937624509876 28.938053778345974 27.45185309079325 22.020716885762017 18-19 21.724679256254824 28.14991501318726 29.047132472713404 21.07827325784451 20-21 22.49644370408132 27.280308440405456 28.859232433492956 21.364015422020273 22-23 22.279801586569327 27.17823631702418 28.76143959064364 21.780522505762857 24-25 22.082592963368022 27.451666135031793 28.665143213530136 21.80059768807005 26-27 21.96928300278638 27.54556451103972 28.677679783860675 21.80747270231322 28-29 21.902469414996535 27.497813392027297 28.732945699742174 21.86677149323399 30-31 22.19846832953524 27.39948758353128 28.628649249490586 21.773394837442897 32-33 22.011936480472237 27.635460035537225 28.517336982766494 21.83526650122404 34-35 22.08713804739003 27.64349240709887 28.572700169042964 21.696669376468133 36-37 22.08595831428946 27.618246215106907 28.501855213385763 21.79394025721787 38-39 22.069037204733345 27.62903363813358 28.524942841069606 21.776986316063468 40-41 22.167787353654667 27.509160489328455 28.460245214257856 21.862806942759022 42-43 22.04612369928698 27.619785055371597 28.252707840466723 22.081383404874696 44-45 22.102008574911096 27.72945863370206 28.098822669148987 22.069710122237858 46-47 22.245917774036965 27.64903294779209 27.858590671942697 22.24645860622824 48-49 22.151152816268898 27.810421383307936 27.78908945891233 22.249336341510837 50-51 22.16556696495385 27.904011056949113 27.669261822086376 22.26116015601066 52-53 22.30523845334673 27.765781919142935 27.610098814082974 22.318880813427366 54-55 22.27918977785673 27.69616562154215 27.65186112410597 22.37278347649515 56-57 22.250579069626237 27.79391979219797 27.594678258851186 22.36082287932461 58-59 22.267227538882985 27.837206661453756 27.60247413116496 22.293091668498295 60-61 22.390599506642197 27.813581268579217 27.56582399025654 22.229995234522043 62-63 22.36796268987029 27.91093828877998 27.516979468067955 22.204119553281775 64-65 22.320273135347907 27.819676268868566 27.531389300240015 22.32866129554351 66-67 22.39524813866087 27.819909517394407 27.39827701202599 22.386565331918728 68-69 22.288391950584106 27.77787519737841 27.52071695417281 22.41301589786468 70-71 22.321908225160406 27.587282135983855 27.59006033680868 22.50074930204706 72-73 22.35819811619754 27.712540329194674 27.412389709393853 22.516871845213938 74-75 22.193689971789933 27.78837800453267 27.4703444062479 22.54758761742949 76-77 22.345311172786428 27.63987477224299 27.46446124204177 22.55035281292881 78-79 22.311574328224644 27.627592876732766 27.41105888304637 22.649773911996224 80-81 22.390991209704524 27.646049154341146 27.388992912694654 22.57396672325968 82-83 22.38908264104688 27.59549593886436 27.506653765260825 22.508767654827935 84-85 22.382553263791433 27.609344808983 27.450288757605897 22.557813169619674 86-87 22.24598795664682 27.659294054099053 27.521377772483252 22.57334021677087 88-89 22.365186422265847 27.55925665098496 27.483557038361255 22.59199988838794 90-91 22.40112360420036 27.53798870721031 27.517849726966244 22.543037961623085 92-93 22.47341210988227 27.456125521766133 27.508700455007727 22.56176191334387 94-95 22.23963357935237 27.470158264275263 27.606500051286552 22.683708105085817 96-97 22.248704392992387 27.46739834241839 27.675196347510756 22.608700917078465 98-99 22.436364935054762 28.07703647621616 27.741389493284363 21.74520909544471 100-101 23.052765873924564 30.794813918239612 24.82494773006948 21.32747247776635 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3620.0 1 3075.0 2 3553.0 3 4834.0 4 6274.0 5 9296.0 6 11871.0 7 14178.0 8 15995.0 9 16318.5 10 15269.5 11 14098.0 12 15432.5 13 20106.0 14 31165.0 15 46118.0 16 57633.0 17 63075.5 18 63554.5 19 61028.5 20 56955.5 21 53274.0 22 52880.0 23 58280.0 24 69696.5 25 87056.0 26 108439.5 27 130124.5 28 152007.5 29 174060.0 30 195083.0 31 217237.0 32 241741.0 33 266476.0 34 288925.0 35 311158.5 36 337166.5 37 357658.0 38 372533.0 39 386979.5 40 399279.5 41 410432.5 42 417879.0 43 427182.5 44 438876.5 45 446118.5 46 449048.5 47 449220.0 48 447317.5 49 443788.0 50 437258.5 51 426540.0 52 411003.0 53 389577.0 54 366679.0 55 343827.5 56 318880.0 57 292460.0 58 262756.0 59 227660.5 60 190750.5 61 155588.5 62 123075.5 63 95054.5 64 71193.0 65 53340.0 66 40519.0 67 30702.0 68 23629.5 69 17310.0 70 12165.0 71 8796.0 72 6347.0 73 4433.5 74 3006.5 75 2030.5 76 1383.0 77 915.5 78 631.5 79 447.0 80 321.0 81 228.0 82 174.0 83 126.5 84 92.5 85 70.5 86 53.0 87 40.5 88 26.0 89 16.0 90 11.5 91 8.5 92 8.0 93 5.5 94 2.5 95 2.5 96 3.0 97 3.0 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001854291446960172 3 1.1125748681761031E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0023504101836643895 22-23 4.54368512150834E-4 24-25 0.0011594112565291087 26-27 0.01271267988674023 28-29 3.4820325264550906E-4 30-31 0.0026731712904936636 32-33 0.002880557810231648 34-35 0.0018007850019399366 36-37 0.062497573012481746 38-39 0.02597049386235714 40-41 0.024950448752460858 42-43 0.003547021741029392 44-45 0.001876142788464366 46-47 0.00391350524109798 48-49 0.003256107089832664 50-51 8.638166876527248E-4 52-53 0.0011203745072316626 54-55 0.0017348924643026684 56-57 0.012307561196762427 58-59 0.009368137917391843 60-61 0.005312313837758235 62-63 0.002912230813689045 64-65 0.0015339349346929901 66-67 5.409648944929938E-4 68-69 0.0013663142792786215 70-71 4.480967064387968E-5 72-73 4.6508383136060273E-4 74-75 1.5503166464331204E-4 76-77 0.004605374367218945 78-79 0.0011960782303509978 80-81 6.454753522547261E-4 82-83 4.304761599877381E-4 84-85 0.0027118428946395537 86-87 0.003263556457841902 88-89 0.041773649574862785 90-91 3.869145499216498E-4 92-93 5.256151652064311E-4 94-95 1.7430694218962772E-4 96-97 0.017520984939382346 98-99 2.0839114990092795E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 277.0 20-21 928.0 22-23 1982.0 24-25 4565.0 26-27 6181.0 28-29 10924.0 30-31 26177.0 32-33 34185.0 34-35 48409.0 36-37 75513.0 38-39 81621.0 40-41 83583.0 42-43 96830.0 44-45 115183.0 46-47 114647.0 48-49 104773.0 50-51 94892.0 52-53 90732.0 54-55 99401.0 56-57 104302.0 58-59 105274.0 60-61 103568.0 62-63 99164.0 64-65 104288.0 66-67 111648.0 68-69 111792.0 70-71 112279.0 72-73 107756.0 74-75 109086.0 76-77 110515.0 78-79 119010.0 80-81 120371.0 82-83 116218.0 84-85 116863.0 86-87 122758.0 88-89 131554.0 90-91 142404.0 92-93 147032.0 94-95 180321.0 96-97 232266.0 98-99 867073.0 100-101 6219446.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.19382315238904 #Duplication Level Percentage of deduplicated Percentage of total 1 90.11854389054808 76.77543290962164 2 6.9191345257078885 11.78935046301494 3 1.6457181107268837 4.206150530518498 4 0.5921229846530043 2.017808833559713 5 0.2650870021201434 1.1291887589310237 6 0.14629185991124605 0.747789770514766 7 0.08606533959072292 0.5132564724449649 8 0.05558194568475644 0.37881907609062665 9 0.036279179462477475 0.27816857993160815 >10 0.1301464332865292 1.7868254460642237 >50 0.003938767840816891 0.22483441937994575 >100 0.0010712923763519684 0.14332532945036883 >500 1.8668091188965343E-5 0.009049410477675246 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.854291446960172E-5 0.0 0.0 0.0 3 0.0 1.854291446960172E-5 0.0 0.0 0.0 4 0.0 7.417165787840688E-5 0.0 9.27145723480086E-6 9.27145723480086E-6 5 9.27145723480086E-6 8.344311511320774E-5 0.0 1.854291446960172E-5 9.27145723480086E-6 6 6.490020064360602E-5 8.344311511320774E-5 0.0 2.781437170440258E-5 9.27145723480086E-6 7 6.490020064360602E-5 8.344311511320774E-5 0.0 2.781437170440258E-5 9.27145723480086E-6 8 6.490020064360602E-5 8.344311511320774E-5 0.0 2.781437170440258E-5 1.854291446960172E-5 9 6.490020064360602E-5 1.4834331575681376E-4 0.0 4.63572861740043E-5 2.781437170440258E-5 10-11 7.417165787840688E-5 1.4834331575681376E-4 0.0 6.026447202620559E-5 2.781437170440258E-5 12-13 8.344311511320774E-5 1.5297904437421418E-4 0.0 7.417165787840688E-5 2.781437170440258E-5 14-15 8.807884373060817E-5 1.9470060193081806E-4 0.0 8.807884373060817E-5 5.099301479140473E-5 16-17 1.4834331575681376E-4 1.9933633054821848E-4 0.0 1.2052894405241118E-4 5.562874340880516E-5 18-19 1.576147729916146E-4 2.4105788810482236E-4 0.0 1.3443612990461247E-4 5.562874340880516E-5 20-21 1.576147729916146E-4 2.827794456614262E-4 0.0 1.4370758713941334E-4 5.562874340880516E-5 22-23 1.6688623022641547E-4 3.1059381736582884E-4 0.0 1.4834331575681376E-4 7.417165787840688E-5 24-25 2.0397205916561893E-4 3.245010032180301E-4 0.0 1.7615768746121634E-4 1.0198602958280945E-4 26-27 2.178792450178202E-4 3.245010032180301E-4 0.0 2.549650739570237E-4 1.1125748681761032E-4 28-29 2.3178643087002149E-4 3.245010032180301E-4 0.0 6.675449209056619E-4 1.1125748681761032E-4 30-31 2.4105788810482236E-4 3.523153749224327E-4 0.0 0.0018357485324905702 1.1125748681761032E-4 32-33 2.503293453396232E-4 3.569511035398331E-4 0.0 0.004352949171739003 1.2052894405241118E-4 34-35 2.874151742788267E-4 4.172155755660387E-4 0.0 0.0075840520180671025 1.390718585220129E-4 36-37 3.0595808874842837E-4 4.7748004759224423E-4 0.0 0.01240984550878095 1.390718585220129E-4 38-39 3.105938173658288E-4 4.913872334444456E-4 0.0 0.019660125066395223 1.390718585220129E-4 40-41 3.152295459832292E-4 5.377445196184499E-4 0.0 0.02784218607610698 1.390718585220129E-4 42-43 3.245010032180301E-4 5.423802482358504E-4 0.0 0.03569974608260071 1.390718585220129E-4 44-45 3.3840818907023137E-4 5.841018057924541E-4 0.0 0.044248029653087106 1.390718585220129E-4 46-47 3.523153749224327E-4 6.25823363349058E-4 0.0 0.05459497592712487 1.4370758713941334E-4 48-49 3.523153749224327E-4 6.304590919664584E-4 0.0 0.06480748607125801 1.6688623022641547E-4 50-51 3.847654752442357E-4 6.675449209056619E-4 0.0 0.07465840938323393 1.6688623022641547E-4 52-53 3.9403693247903654E-4 6.675449209056619E-4 0.0 0.08437953229392263 1.900648733134176E-4 54-55 4.0794411833123786E-4 6.675449209056619E-4 0.0 0.09460131389529058 2.2251497363522061E-4 56-57 4.172155755660387E-4 6.675449209056619E-4 0.0 0.1045449517796145 2.3642215948742193E-4 58-59 4.2648703280083954E-4 6.768163781404627E-4 0.0 0.11353826529737132 2.456936167222228E-4 60-61 4.3112276141823996E-4 6.860878353752636E-4 0.0 0.1218872125373095 2.596008025744241E-4 62-63 4.450299472704413E-4 7.185379356970667E-4 0.0 0.13007854500425609 2.6887225980922494E-4 64-65 4.450299472704413E-4 8.066167794276748E-4 0.0 0.13871490741847306 2.6887225980922494E-4 66-67 4.5893713312264255E-4 8.29795422514677E-4 0.0 0.14724464807448984 2.6887225980922494E-4 68-69 4.6357286174004297E-4 8.715169800712808E-4 0.0 0.1564975623948211 2.7814371704402584E-4 70-71 4.7748004759224423E-4 8.807884373060817E-4 0.0 0.16467962340453285 2.874151742788267E-4 72-73 5.052944192966468E-4 8.807884373060817E-4 0.0 0.17072461352162305 3.3377246045283095E-4 74-75 5.099301479140472E-4 9.132385376278847E-4 0.0 0.17617159464706855 3.3377246045283095E-4 76-77 5.099301479140472E-4 0.0010013173813584928 0.0 0.18169274743039246 3.3377246045283095E-4 78-79 5.192016051488482E-4 0.0010384032102976964 0.0 0.18675032735197633 3.3840818907023137E-4 80-81 5.192016051488482E-4 0.0010384032102976964 0.0 0.1896801078381734 3.6622256077463395E-4 82-83 5.192016051488482E-4 0.0010430389389150968 0.0 0.1918125430021776 4.2648703280083954E-4 84-85 5.192016051488482E-4 0.0010476746675324971 0.0 0.19359266279125936 4.2648703280083954E-4 86-87 5.192016051488482E-4 0.0010615818533846984 0.0 0.19382908495074677 4.4039421865304086E-4 88-89 5.192016051488482E-4 0.0010940319537065014 0.0 0.193866170779686 4.450299472704413E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13210 0.0 50.831802 1 GTATCAA 24050 0.0 36.514103 1 TCAACGC 30905 0.0 27.994778 4 ATCAACG 31355 0.0 27.63303 3 CAACGCA 31615 0.0 27.37931 5 TATCAAC 32530 0.0 26.905487 2 AACGCAG 32450 0.0 26.790823 6 ACGCAGA 37765 0.0 23.00924 7 CGCAGAG 38500 0.0 22.580837 8 GTACATG 34915 0.0 19.351906 1 GCAGAGT 44670 0.0 19.218374 9 AGAGTAC 40340 0.0 18.9685 10-11 TACATGG 35545 0.0 18.749968 2 GAGTACT 23385 0.0 18.588032 12-13 ACATGGG 35690 0.0 18.145947 3 CAGAGTA 43385 0.0 17.473253 10-11 AGTACTT 26455 0.0 16.612825 12-13 GTACTTT 26660 0.0 16.329407 14-15 CATGGGG 26420 0.0 16.104357 4 GTGGTAT 6545 0.0 16.044542 1 >>END_MODULE