##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139815_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11718222 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.042167659906085 33.0 31.0 34.0 30.0 34.0 2 32.19780970184726 33.0 31.0 34.0 30.0 34.0 3 32.249187547394136 34.0 31.0 34.0 30.0 34.0 4 35.90093454450684 37.0 35.0 37.0 35.0 37.0 5 35.77832003865433 37.0 35.0 37.0 35.0 37.0 6 35.792519633097925 37.0 35.0 37.0 33.0 37.0 7 35.713326219626154 37.0 35.0 37.0 33.0 37.0 8 35.691918961767406 37.0 35.0 37.0 33.0 37.0 9 37.32694413879512 39.0 37.0 39.0 34.0 39.0 10-11 37.23736271594787 39.0 37.0 39.0 33.0 39.0 12-13 37.21772176700527 39.0 37.0 39.0 33.0 39.0 14-15 38.43322263394566 40.0 38.0 41.0 33.0 41.0 16-17 38.41650094186644 40.0 38.0 41.0 33.0 41.0 18-19 38.451684607101654 40.0 38.0 41.0 33.5 41.0 20-21 38.426056905943184 40.0 38.0 41.0 34.0 41.0 22-23 38.35942332849581 40.0 38.0 41.0 34.0 41.0 24-25 38.27978069706862 40.0 38.0 41.0 33.5 41.0 26-27 38.13856373487113 40.0 38.0 41.0 33.0 41.0 28-29 38.04014718499545 40.0 37.0 41.0 33.0 41.0 30-31 37.93126716603061 40.0 37.0 41.0 33.0 41.0 32-33 38.09632139775499 40.0 37.0 41.0 33.0 41.0 34-35 38.08291355999512 40.0 37.0 41.0 33.0 41.0 36-37 38.001938444277194 40.0 37.0 41.0 33.0 41.0 38-39 37.87848214839845 40.0 37.0 41.0 33.0 41.0 40-41 37.830476074389935 40.0 37.0 41.0 33.0 41.0 42-43 37.75548513541945 40.0 37.0 41.0 33.0 41.0 44-45 37.75615603997138 40.0 37.0 41.0 33.0 41.0 46-47 37.7948342768357 40.0 37.0 41.0 33.0 41.0 48-49 37.72642115233918 40.0 37.0 41.0 32.5 41.0 50-51 37.667425661784364 40.0 37.0 41.0 32.0 41.0 52-53 37.53513305820239 40.0 36.0 41.0 32.0 41.0 54-55 37.420340243646066 39.0 36.0 41.0 32.0 41.0 56-57 37.25982633194596 39.0 36.0 41.0 31.0 41.0 58-59 37.103768974247174 39.0 35.5 40.5 31.0 41.0 60-61 36.95723124258148 39.0 35.0 40.0 31.0 41.0 62-63 36.742912437287096 38.5 35.0 40.0 31.0 41.0 64-65 36.53688471424783 38.0 35.0 40.0 31.0 41.0 66-67 36.293553507481676 38.0 35.0 40.0 30.5 41.0 68-69 36.00764717769847 37.0 34.0 40.0 30.0 41.0 70-71 35.72963360172545 37.0 34.0 39.0 30.0 41.0 72-73 35.41152328086562 36.0 34.0 39.0 30.0 40.5 74-75 35.072107677580945 36.0 34.0 39.0 29.0 40.0 76-77 33.977039267239704 35.0 32.5 37.0 28.5 39.0 78-79 34.329148137597656 35.0 33.0 37.0 29.0 39.0 80-81 34.2056012119771 35.0 33.0 37.0 29.0 39.0 82-83 33.94110993732431 35.0 33.0 36.0 29.0 38.5 84-85 33.719404974332114 35.0 33.0 36.0 29.0 37.0 86-87 33.53154892125316 35.0 33.0 35.5 29.0 37.0 88-89 33.318270295471756 35.0 33.0 35.0 29.0 36.5 90-91 33.1879225088712 35.0 33.0 35.0 29.0 36.0 92-93 33.12486902971828 35.0 33.0 35.0 29.0 36.0 94-95 33.080670883813866 34.0 33.0 35.0 29.0 36.0 96-97 33.02963620579893 34.0 33.0 35.0 29.0 35.0 98-99 33.11343021311791 34.0 33.0 35.0 29.0 35.0 100-101 32.61042821259586 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 1.0 18 4.0 19 11.0 20 68.0 21 409.0 22 1893.0 23 6526.0 24 17451.0 25 37214.0 26 67008.0 27 106178.0 28 153336.0 29 205046.0 30 262452.0 31 329638.0 32 411812.0 33 523594.0 34 692438.0 35 943581.0 36 1416927.0 37 2325073.0 38 2825343.0 39 1339580.0 40 52638.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.74898615165338 22.537625588591855 15.578813919039936 24.134574340714828 2 13.788909107015183 23.13703696560383 41.0755624070748 21.99849152030619 3 16.746038776189767 28.051875105284747 31.832943598440107 23.369142520085383 4 12.062350414593613 19.99520917081107 39.89220378313365 28.050236631461665 5 12.533761521159098 38.441702162665976 36.52532781850352 12.499208497671404 6 28.11254130532772 39.954559659306675 19.478193876169954 12.454705159195653 7 24.60501260344786 33.293771017480296 25.04389317765101 17.05732320142083 8 23.269059077392455 37.699021233767375 22.183476298708115 16.848443390132054 9 24.993237028620896 16.804878760617438 22.045358075653457 36.15652613510821 10-11 23.254449352470026 27.41511468207378 30.161704565760918 19.168731399695275 12-13 24.23522527564335 25.047268263052192 29.956635059482572 20.76087140182188 14-15 21.46325611513419 26.396423450588323 27.406555363091773 24.733765071185715 16-17 21.104925303514474 29.32725203533437 28.10788616225226 21.459936498898895 18-19 21.154422347203976 28.656384046806004 29.591480058080815 20.597713547909205 20-21 21.9185497570726 27.907077864225645 29.35291203728615 20.82146034141561 22-23 21.640962178828328 27.86945677632811 29.163826592178623 21.325754452664942 24-25 21.490452114077783 28.00466061607823 29.19322271946615 21.31166455037783 26-27 21.487378847246482 28.093782207848193 29.09810231652029 21.320736628385035 28-29 21.44781733941345 28.161283051934717 29.11242809819008 21.278471510461756 30-31 21.653866291082156 28.04912576267437 29.036780041421846 21.260227904821623 32-33 21.509284479752104 28.15775094954054 28.979186311439864 21.353778259267493 34-35 21.595861737709576 28.189064677852826 28.988015712968913 21.227057871468684 36-37 21.57030738397707 28.167633366818666 28.922486424346605 21.339572824857655 38-39 21.458835898204683 28.250313805005085 28.963676513112365 21.327173783677875 40-41 21.659921006859033 28.11065351122386 28.86090207686261 21.3685234050545 42-43 21.573018988709844 28.25231222918212 28.64950957853797 21.52515920357007 44-45 21.64630860163278 28.279591423535273 28.504525835495826 21.569574139336126 46-47 21.719927482072574 28.304562320465553 28.29442581279249 21.681084384669383 48-49 21.65879872225299 28.390882537460556 28.2716001726508 21.67871856763566 50-51 21.680871817950518 28.465123016941025 28.170950272594773 21.68305489251368 52-53 21.8028672479197 28.356187348029334 28.091314250490683 21.749631153560287 54-55 21.75770849718556 28.307787193013795 28.140664935327276 21.79383937447337 56-57 21.773635200899534 28.35992333017613 28.101987576203086 21.764453892721253 58-59 21.776809445372784 28.365495688987313 28.119564155067735 21.73813071057217 60-61 21.73586576759438 28.19659542648672 28.230995472986493 21.836543332932408 62-63 21.865501016237264 28.315730587251643 28.202213408129563 21.616554988381534 64-65 21.624248794943675 28.269117023744144 28.162850006310325 21.943784175001856 66-67 21.709560398797027 28.27861018773148 28.039175334185263 21.97265407928623 68-69 21.65766568517413 28.50495523709616 28.0648493547497 21.772529722980007 70-71 21.686408017538668 28.343283639623014 28.10585689493637 21.864451447901946 72-73 21.688439318318565 28.334102704031228 27.834137540068504 22.1433204375817 74-75 21.62863871370251 28.39068599466641 27.827704777077262 22.152970514553814 76-77 21.764382054703063 28.09153414319592 28.02800560326774 22.11607819883328 78-79 21.74711063465253 28.052842334343524 27.96267736384772 22.237369667156223 80-81 22.011128956755314 28.048508796669996 27.75989699370904 22.18046525286564 82-83 22.016093137328284 28.28476828491305 27.840109837052335 21.85902874070633 84-85 21.803980384781944 28.035762385125818 27.80961174155013 22.35064548854211 86-87 21.739452964512143 28.285777322143968 27.845154129268536 22.129615584075353 88-89 22.04866290747824 28.002361092606154 27.83238810895424 22.116587890961366 90-91 22.079350529550155 28.187610556574526 27.894991170037724 21.838047743837596 92-93 21.830333377112726 28.130443134068283 27.908769914136627 22.130453574682367 94-95 21.966728784230206 27.861536320623436 28.021103837171314 22.150631057975048 96-97 21.90507591792576 28.1894585869514 28.06652464882221 21.83894084630063 98-99 22.17113749639725 28.588327745431936 28.223374597253283 21.017160160917538 100-101 22.51771998032133 31.35442088817436 25.51622316406348 20.61163596744083 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2268.0 1 2036.5 2 2835.0 3 4105.0 4 5549.5 5 8732.0 6 11318.0 7 13178.0 8 14203.5 9 13871.5 10 13034.0 11 12205.0 12 13449.0 13 17928.0 14 28412.0 15 42889.0 16 54590.5 17 60792.0 18 62294.5 19 60893.5 20 58404.5 21 56623.5 22 57905.0 23 64762.5 24 78456.5 25 99436.5 26 125668.5 27 154001.0 28 184191.5 29 214526.0 30 242161.0 31 270807.0 32 300793.5 33 329287.0 34 355874.0 35 379829.0 36 405333.5 37 428125.0 38 445417.5 39 459384.5 40 473451.0 41 486285.0 42 490870.0 43 493865.5 44 497277.5 45 497488.5 46 493762.5 47 486743.5 48 477489.0 49 465163.5 50 450950.0 51 431349.0 52 404900.5 53 376554.0 54 347778.0 55 318090.0 56 287886.0 57 256929.5 58 225267.0 59 192243.5 60 159346.5 61 128987.5 62 101661.0 63 78048.0 64 57972.5 65 43403.5 66 32889.0 67 24688.5 68 18602.5 69 13373.5 70 9510.5 71 6909.5 72 4865.0 73 3326.5 74 2253.0 75 1527.0 76 1051.5 77 718.0 78 486.0 79 328.0 80 236.0 81 157.0 82 108.5 83 86.0 84 69.5 85 52.0 86 36.0 87 25.0 88 16.0 89 10.5 90 8.0 91 6.5 92 5.0 93 3.0 94 2.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00395964507243505 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.717590945110956E-4 20-21 0.0013398473811424162 22-23 0.00265436429980729 24-25 4.695273545569657E-5 26-27 0.008151450795981272 28-29 1.9223903668249762E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03502348626158919 38-39 0.015341399881419594 40-41 0.024726631164546767 42-43 0.001192505342423934 44-45 0.0053266409921085035 46-47 0.004558968044246857 48-49 0.002567299900594512 50-51 0.0022335800841866665 52-53 2.1789523495110036E-4 54-55 0.002730665996344274 56-57 0.014423666215596714 58-59 0.009986916900509095 60-61 0.0037165823498017574 62-63 0.0011435415510910381 64-65 0.0032162521283193544 66-67 2.8218232483185647E-4 68-69 4.4592600995226685E-4 70-71 1.978087356902498E-4 72-73 0.0 74-75 0.0 76-77 0.0057831202559601655 78-79 3.0920310523082625E-4 80-81 0.0 82-83 1.0967023312436951E-4 84-85 0.0018905769640536817 86-87 0.005223482407723037 88-89 0.08030685593933043 90-91 0.0028835265004823352 92-93 0.0013643798158158432 94-95 6.050411666984616E-6 96-97 0.01687676198884298 98-99 3.89574088388517E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 274.0 20-21 990.0 22-23 1967.0 24-25 4154.0 26-27 5144.0 28-29 8867.0 30-31 26176.0 32-33 34172.0 34-35 48875.0 36-37 74969.0 38-39 81084.0 40-41 87690.0 42-43 98924.0 44-45 115565.0 46-47 117598.0 48-49 107507.0 50-51 97184.0 52-53 89925.0 54-55 97735.0 56-57 104001.0 58-59 61552.0 60-61 109155.0 62-63 104126.0 64-65 110993.0 66-67 120121.0 68-69 121211.0 70-71 120474.0 72-73 117066.0 74-75 119512.0 76-77 120327.0 78-79 129044.0 80-81 131656.0 82-83 127041.0 84-85 126465.0 86-87 133563.0 88-89 142339.0 90-91 153514.0 92-93 158924.0 94-95 195161.0 96-97 250931.0 98-99 992879.0 100-101 6869367.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.36460568858439 #Duplication Level Percentage of deduplicated Percentage of total 1 90.4236260857976 78.09400811831902 2 6.844494517130434 11.822441402192954 3 1.6211919983971583 4.200408230611761 4 0.5272558933622137 1.8214498930883953 5 0.2269965481020681 0.9802233684752445 6 0.11557060846565385 0.5988726017595581 7 0.06888141422526498 0.416424132518594 8 0.042562281721217655 0.29406997424475245 9 0.02849645444319121 0.22149765463580257 >10 0.09818587917921362 1.3511687629559177 >50 0.0023033854464314008 0.13406987409218496 >100 4.349337295445621E-4 0.06536598710579151 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.533717828523815E-6 0.0 0.0 0.0 3 0.0 8.533717828523815E-6 0.0 0.0 0.0 4 0.0 3.413487131409526E-5 0.0 1.706743565704763E-5 0.0 5 0.0 3.413487131409526E-5 0.0 3.413487131409526E-5 0.0 6 3.413487131409526E-5 3.413487131409526E-5 0.0 3.413487131409526E-5 8.533717828523815E-6 7 3.413487131409526E-5 3.413487131409526E-5 0.0 4.2668589142619074E-5 8.533717828523815E-6 8 3.413487131409526E-5 3.413487131409526E-5 0.0 4.2668589142619074E-5 8.533717828523815E-6 9 3.413487131409526E-5 5.9736024799666707E-5 0.0 8.533717828523815E-5 8.533717828523815E-6 10-11 3.413487131409526E-5 5.9736024799666707E-5 0.0 8.533717828523815E-5 8.533717828523815E-6 12-13 3.413487131409526E-5 6.826974262819052E-5 0.0 8.960403719950006E-5 8.533717828523815E-6 14-15 3.413487131409526E-5 7.680346045671433E-5 0.0 9.387089611376196E-5 1.706743565704763E-5 16-17 5.120230697114289E-5 7.680346045671433E-5 0.0 1.0240461394228578E-4 2.5601153485571445E-5 18-19 5.120230697114289E-5 8.960403719950006E-5 0.0 1.2373890851359533E-4 3.413487131409526E-5 20-21 5.120230697114289E-5 1.0240461394228578E-4 0.0 1.5360692091342866E-4 3.413487131409526E-5 22-23 5.120230697114289E-5 1.109383317708096E-4 0.0 2.9441326508407165E-4 4.2668589142619074E-5 24-25 5.120230697114289E-5 1.3227262634211913E-4 0.0 7.296328743387862E-4 5.120230697114289E-5 26-27 5.120230697114289E-5 1.4507320308490486E-4 0.0 0.0022913032369586443 5.120230697114289E-5 28-29 5.120230697114289E-5 1.4934006199916676E-4 0.0 0.013423538144267961 5.120230697114289E-5 30-31 5.54691658854048E-5 1.7920807439900013E-4 0.0 0.020340116444286516 5.120230697114289E-5 32-33 5.9736024799666707E-5 1.8774179222752393E-4 0.0 0.025148866440659685 5.120230697114289E-5 34-35 6.400288371392861E-5 2.218766635416192E-4 0.0 0.03175823089885138 5.9736024799666707E-5 36-37 6.826974262819052E-5 2.5601153485571446E-4 0.0 0.04096184557691431 5.9736024799666707E-5 38-39 6.826974262819052E-5 2.6454525268423826E-4 8.533717828523815E-6 0.05833222821687454 6.826974262819052E-5 40-41 6.826974262819052E-5 2.816126883412859E-4 8.533717828523815E-6 0.0957824489073513 7.680346045671433E-5 42-43 6.826974262819052E-5 2.816126883412859E-4 8.533717828523815E-6 0.11133941650875022 8.107031937097623E-5 44-45 6.826974262819052E-5 2.858795472555478E-4 8.533717828523815E-6 0.13410737567525177 8.533717828523815E-5 46-47 7.253660154245243E-5 2.901464061698097E-4 8.533717828523815E-6 0.15988347037630796 8.960403719950006E-5 48-49 7.680346045671433E-5 2.901464061698097E-4 8.533717828523815E-6 0.18172552115841464 1.109383317708096E-4 50-51 9.387089611376196E-5 3.7548358445504786E-4 8.533717828523815E-6 0.20322195636846613 1.109383317708096E-4 52-53 1.0240461394228578E-4 3.840173022835717E-4 8.533717828523815E-6 0.2323475353172179 1.109383317708096E-4 54-55 1.0240461394228578E-4 3.8828416119783364E-4 8.533717828523815E-6 0.29221583274322677 1.109383317708096E-4 56-57 1.0240461394228578E-4 4.010847379406193E-4 8.533717828523815E-6 0.3561419129966986 1.109383317708096E-4 58-59 1.0240461394228578E-4 4.010847379406193E-4 8.533717828523815E-6 0.41114599126044893 1.1947204959933341E-4 60-61 1.109383317708096E-4 4.010847379406193E-4 8.533717828523815E-6 0.8276426235993822 1.2800576742785723E-4 62-63 1.3653948525638103E-4 4.010847379406193E-4 8.533717828523815E-6 0.8372771910277856 1.3653948525638103E-4 64-65 1.3653948525638103E-4 4.266858914261908E-4 8.533717828523815E-6 0.8470568316592739 1.3653948525638103E-4 66-67 1.5360692091342866E-4 4.266858914261908E-4 8.533717828523815E-6 0.855270535069228 1.3653948525638103E-4 68-69 1.621406387419525E-4 4.437533270832384E-4 8.533717828523815E-6 0.8632239600854122 1.3653948525638103E-4 70-71 1.664074976562144E-4 4.6082076274028605E-4 8.533717828523815E-6 0.8704392185094292 1.3653948525638103E-4 72-73 1.9200865114178586E-4 4.6082076274028605E-4 8.533717828523815E-6 0.8765408267568237 1.4507320308490486E-4 74-75 1.9627551005604776E-4 4.906887751401194E-4 8.533717828523815E-6 0.882019473602736 1.4507320308490486E-4 76-77 1.9627551005604776E-4 5.333573642827385E-4 8.533717828523815E-6 0.8871439711587645 1.4507320308490486E-4 78-79 1.9627551005604776E-4 5.461579410255241E-4 8.533717828523815E-6 0.8913766952017124 1.4507320308490486E-4 80-81 1.9627551005604776E-4 5.461579410255241E-4 8.533717828523815E-6 0.8938685408076413 1.578737798276906E-4 82-83 2.0054236897030966E-4 5.461579410255241E-4 8.533717828523815E-6 0.8953107391206618 1.7920807439900013E-4 84-85 2.133429457130954E-4 5.54691658854048E-4 8.533717828523815E-6 0.8965822630771119 1.7920807439900013E-4 86-87 2.218766635416192E-4 5.54691658854048E-4 8.533717828523815E-6 0.8969065443545958 1.7920807439900013E-4 88-89 2.4747781702719066E-4 5.717590945110956E-4 8.533717828523815E-6 0.8969449460848241 1.8347493331326203E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12775 0.0 46.52628 1 GTATCAA 22545 0.0 34.241207 1 TCAACGC 26900 0.0 28.006502 4 AGACCGA 9675 0.0 27.748274 90-91 ATCAACG 27190 0.0 27.707794 3 CGAGACC 9640 0.0 27.635735 88-89 ACCGAGG 10065 0.0 27.627785 92-93 GAGACCG 9880 0.0 27.540068 88-89 GACCGAG 9995 0.0 27.381733 90-91 CAACGCA 27705 0.0 27.177517 5 ACGAGAC 10115 0.0 26.84123 86-87 AACGCAG 28510 0.0 26.484118 6 TATCAAC 29200 0.0 25.902739 2 CCCACGA 10465 0.0 25.278288 84-85 CACGAGA 10690 0.0 24.985628 86-87 GCCCACG 10550 0.0 24.953213 82-83 CCACGAG 11250 0.0 24.001106 84-85 ATCTCCG 10855 0.0 23.423212 74-75 ACGCAGA 32520 0.0 23.244337 7 TCTCCGA 10840 0.0 23.116385 76-77 >>END_MODULE