##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139814_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7654067 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.095508701452445 33.0 31.0 34.0 30.0 34.0 2 32.25009527614535 34.0 31.0 34.0 30.0 34.0 3 32.30311192729303 34.0 31.0 34.0 30.0 34.0 4 35.93994944125783 37.0 35.0 37.0 35.0 37.0 5 35.81956834190242 37.0 35.0 37.0 35.0 37.0 6 35.83123978402593 37.0 35.0 37.0 35.0 37.0 7 35.75273838078501 37.0 35.0 37.0 33.0 37.0 8 35.73285378871128 37.0 35.0 37.0 33.0 37.0 9 37.38000242224167 39.0 37.0 39.0 34.0 39.0 10-11 37.29113613716734 39.0 37.0 39.0 34.0 39.0 12-13 37.270717058003285 39.0 37.0 39.0 33.5 39.0 14-15 38.50410748952159 40.0 38.0 41.0 34.0 41.0 16-17 38.48318325407917 40.0 38.0 41.0 34.0 41.0 18-19 38.51441070479263 40.0 38.0 41.0 34.0 41.0 20-21 38.48520747223559 40.0 38.0 41.0 34.0 41.0 22-23 38.41827621431584 40.0 38.0 41.0 34.0 41.0 24-25 38.33615957874699 40.0 38.0 41.0 34.0 41.0 26-27 38.19368520240631 40.0 38.0 41.0 33.0 41.0 28-29 38.0959785849262 40.0 37.5 41.0 33.0 41.0 30-31 37.98863150561572 40.0 37.0 41.0 33.0 41.0 32-33 38.160979359443175 40.0 38.0 41.0 33.0 41.0 34-35 38.15062166268473 40.0 38.0 41.0 33.0 41.0 36-37 38.0699098765189 40.0 37.5 41.0 33.0 41.0 38-39 37.94803410834204 40.0 37.0 41.0 33.0 41.0 40-41 37.89867004465627 40.0 37.0 41.0 33.0 41.0 42-43 37.81926991952241 40.0 37.0 41.0 33.0 41.0 44-45 37.81690777809764 40.0 37.0 41.0 33.0 41.0 46-47 37.8513561386781 40.0 37.0 41.0 33.0 41.0 48-49 37.77667320759434 40.0 37.0 41.0 33.0 41.0 50-51 37.710693878583285 40.0 37.0 41.0 32.5 41.0 52-53 37.57275279715169 40.0 36.5 41.0 32.0 41.0 54-55 37.45695147724921 39.0 36.0 41.0 32.0 41.0 56-57 37.29251487709752 39.0 36.0 41.0 31.0 41.0 58-59 37.13378955914312 39.0 35.5 41.0 31.0 41.0 60-61 36.98423189855903 39.0 35.0 40.0 31.0 41.0 62-63 36.762359539933485 38.5 35.0 40.0 31.0 41.0 64-65 36.55936503695124 38.0 35.0 40.0 31.0 41.0 66-67 36.30993612427612 37.5 35.0 40.0 31.0 41.0 68-69 36.01908581977582 37.0 34.0 40.0 30.0 41.0 70-71 35.72696373621727 36.5 34.0 39.0 30.0 41.0 72-73 35.40741698127907 36.0 34.0 39.0 30.0 40.5 74-75 35.05439361652532 36.0 34.0 38.5 29.5 40.0 76-77 33.94196501176003 35.0 32.5 37.0 28.5 39.0 78-79 34.25654077089166 35.0 33.0 37.0 29.0 39.0 80-81 34.117037219303924 35.0 33.0 36.5 29.0 39.0 82-83 33.856209642491905 35.0 33.0 36.0 29.0 37.5 84-85 33.65254513519594 35.0 33.0 36.0 29.0 37.0 86-87 33.48116960870334 35.0 33.0 35.0 29.0 37.0 88-89 33.273262026789496 35.0 33.0 35.0 29.0 36.0 90-91 33.172085906589146 35.0 33.0 35.0 29.0 36.0 92-93 33.12250421486783 35.0 33.0 35.0 29.0 36.0 94-95 33.084294466268815 35.0 33.0 35.0 29.0 35.5 96-97 33.022931351772115 34.0 33.0 35.0 29.0 35.0 98-99 33.09852050230859 34.0 33.0 35.0 29.0 35.0 100-101 32.584143491696295 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 2.0 19 7.0 20 45.0 21 263.0 22 1203.0 23 4184.0 24 10951.0 25 23783.0 26 43158.0 27 69512.0 28 99207.0 29 133657.0 30 170226.0 31 212443.0 32 265958.0 33 337464.0 34 446799.0 35 613354.0 36 931938.0 37 1550896.0 38 1882658.0 39 820368.0 40 35990.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.274193089006545 22.04924807285435 15.300795681667756 24.375763156471344 2 13.974881511943533 22.799943818206167 40.8160862847829 22.409088385067403 3 17.008306434775974 27.68339076250453 31.485631297143247 23.822671505576253 4 12.320548017152188 19.561025530610067 39.39546126262025 28.722965189617494 5 12.80285369856313 38.24076794728868 36.23542882496325 12.72094952918494 6 28.743437965724628 39.34710788395242 19.209212566338916 12.700241583984043 7 25.075610129882588 33.013181097055984 24.631963634496536 17.279245138564896 8 23.604248564847943 37.37052471581448 21.924644767285155 17.10058195205242 9 25.19895961179326 16.73258370126414 21.76275981942147 36.30569686752113 10-11 23.613292595073 27.126569067996016 29.834574198863717 19.42556413806727 12-13 24.539818147647395 24.73216034901186 29.653838257088566 21.074183246252172 14-15 21.776391673628652 26.081521502328208 27.045251044003866 25.096835780039278 16-17 21.505037779261666 29.022080679461 27.742884926405793 21.729996614871546 18-19 21.52362600378572 28.36268869812794 29.158472719709266 20.955212578377072 20-21 22.245203867283667 27.63198286317356 28.928219940897808 21.194593328644963 22-23 22.05265229034399 27.543478742364798 28.756970577337693 21.646898389953524 24-25 21.867457557782778 27.6935704264055 28.770644408096157 21.668327607715568 26-27 21.82322659773244 27.802937288421482 28.704103233972333 21.66973287987374 28-29 21.806149898134343 27.823401298488704 28.744047590629236 21.626401212747716 30-31 21.993341273452153 27.71101904600592 28.64489198965711 21.650747690884813 32-33 21.842571158705717 27.88256877506693 28.569052808099755 21.705807258127603 34-35 21.94818345001524 27.879310454940587 28.574806202647736 21.597699892396438 36-37 21.924789128785026 27.832783343852658 28.54757443752399 21.694853089838322 38-39 21.78039801753392 27.896690417956254 28.63242698597041 21.690484578539415 40-41 21.952210597376567 27.683246936232226 28.57000387336201 21.794538593029195 42-43 21.975804697580976 27.82745057203838 28.34816233441593 21.848582395964712 44-45 21.903629810042847 27.81608439854591 28.25604405257986 22.02424173883139 46-47 21.987188534398943 27.827673626404824 28.062504893893514 22.122632945302716 48-49 21.872548769079327 28.117167171448955 28.036491814971924 21.973792244499798 50-51 21.908635754829067 28.12891569837187 27.97790383477613 21.984544712022934 52-53 22.00765232533838 27.949628108620416 27.69656452814272 22.346155037898484 54-55 21.90482229277387 27.71176078850263 27.924348806933335 22.459068111790167 56-57 21.971520207730258 27.436156724028816 28.19358686070438 22.39873620753655 58-59 21.803741673220134 27.212819859091695 28.323841794514827 22.65959667317334 60-61 21.828513484665198 27.01456628477905 28.648865011029674 22.508055219526078 62-63 21.61217372838009 27.58137564430465 28.604987825078247 22.201462802237014 64-65 21.228893127658583 27.794926056129853 28.403729884909705 22.572450931301862 66-67 21.271256118164473 28.41332210436506 27.923016931738776 22.392404845731694 68-69 21.393335976200223 28.705957370353886 27.44992162460046 22.45078502884543 70-71 21.390036867852682 28.339769699520943 27.419544544723447 22.85064888790293 72-73 21.28482067672386 27.901166327650113 27.389228734932225 23.4247842606938 74-75 21.728975205617406 27.5363233001189 27.435939748277715 23.298761745985967 76-77 22.146650829239263 27.382084183579835 27.336758528431226 23.13450645874967 78-79 22.369442373152896 27.24946151913906 26.647446839231076 23.733649268476963 80-81 22.27028411284414 27.674623353842808 26.582303768050085 23.472788765262965 82-83 22.18451944763057 27.809129093303785 26.64322743635012 23.36312402271552 84-85 22.18502946814747 27.811909184767398 26.6359063171681 23.367155029917036 86-87 22.568928915985563 28.11163421700712 26.554869173211255 22.76456769379606 88-89 22.716502433345624 27.771765841499352 26.910623309727715 22.60110841542731 90-91 22.42689350000069 27.790018554440415 27.188692921245938 22.594395024312952 92-93 22.227112215221087 27.25489117834803 27.090386221951036 23.427610384479856 94-95 22.053709030313083 27.200237509722403 27.779979434127167 22.966074025837347 96-97 21.633116100776775 27.511335272055724 28.077372313793443 22.778176313374058 98-99 21.895962045010528 27.61539725600879 28.406401685180004 22.082239013800677 100-101 22.578748293095714 30.52908551815446 25.742968983235333 21.149197205514493 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1443.0 1 1318.0 2 1832.0 3 2603.5 4 3408.0 5 5166.0 6 6666.5 7 7815.0 8 8599.0 9 8627.5 10 8170.0 11 7678.5 12 8393.5 13 10904.5 14 16942.0 15 25457.0 16 32416.0 17 36174.5 18 37074.0 19 35854.0 20 33577.5 21 31711.0 22 31672.0 23 35132.0 24 42388.0 25 53235.0 26 67463.5 27 83083.5 28 100400.5 29 119195.5 30 136725.0 31 154574.5 32 173163.0 33 190299.5 34 206782.0 35 222225.5 36 240192.5 37 257165.0 38 271081.5 39 282893.0 40 293432.0 41 304237.5 42 310875.0 43 315658.0 44 320225.5 45 324286.0 46 325899.5 47 325030.5 48 322722.5 49 316933.0 50 308432.0 51 297025.0 52 281562.5 53 264401.0 54 245952.0 55 225634.5 56 204573.0 57 182374.0 58 159798.5 59 137066.0 60 114343.0 61 92872.5 62 73310.5 63 56436.0 64 41863.5 65 31054.0 66 23589.5 67 17799.0 68 13514.5 69 9876.5 70 6889.5 71 4922.0 72 3523.0 73 2444.0 74 1642.5 75 1096.5 76 722.5 77 466.0 78 314.0 79 219.5 80 153.0 81 108.0 82 79.5 83 52.5 84 36.0 85 26.5 86 17.5 87 11.0 88 5.5 89 3.5 90 3.5 91 3.0 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.3064949653563263E-5 2 0.0044682127815186354 3 1.3064949653563263E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.3064949653563263E-5 10-11 1.3064949653563263E-5 12-13 6.5324748267816315E-6 14-15 6.5324748267816315E-6 16-17 0.0 18-19 5.617928351032203E-4 20-21 0.0011758891763647581 22-23 0.0029138844569025707 24-25 2.613939328115649E-5 26-27 0.008171542244585373 28-29 1.8312305247816175E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03633950264696858 38-39 0.015973472578316977 40-41 0.02460488647558321 42-43 0.0012948667099952447 44-45 0.005286911933111378 46-47 0.004241480913404634 48-49 0.00233312853649513 50-51 0.002179794190981652 52-53 2.9644220650968734E-4 54-55 0.002360933756369308 56-57 0.01363404978636803 58-59 0.009350756223800247 60-61 0.003166483378274864 62-63 0.0010711487171376605 64-65 0.002854333346479245 66-67 2.4972787007099614E-4 68-69 6.764464469241534E-4 70-71 2.9347907554392206E-4 72-73 0.0 74-75 0.0 76-77 0.006137797776899015 78-79 3.7975365538605796E-4 80-81 0.0 82-83 9.76520619599078E-5 84-85 0.0015842839036755386 86-87 0.004954965888575204 88-89 0.07706554923461849 90-91 0.002695989818836397 92-93 0.0011877790730924049 94-95 0.0 96-97 0.01691957134633811 98-99 5.765895420495221E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 174.0 20-21 625.0 22-23 1223.0 24-25 2733.0 26-27 3242.0 28-29 5485.0 30-31 16991.0 32-33 22374.0 34-35 32011.0 36-37 49080.0 38-39 34938.0 40-41 56545.0 42-43 62558.0 44-45 73593.0 46-47 74436.0 48-49 68237.0 50-51 63108.0 52-53 10661.0 54-55 10267.0 56-57 10222.0 58-59 10733.0 60-61 72217.0 62-63 70235.0 64-65 75090.0 66-67 80676.0 68-69 81590.0 70-71 81685.0 72-73 79226.0 74-75 81191.0 76-77 81465.0 78-79 87021.0 80-81 88598.0 82-83 85328.0 84-85 84489.0 86-87 90207.0 88-89 94508.0 90-91 102588.0 92-93 106486.0 94-95 130245.0 96-97 167393.0 98-99 698118.0 100-101 4606475.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.57787345674889 #Duplication Level Percentage of deduplicated Percentage of total 1 91.20922722836356 79.8791016029348 2 6.406807730577811 11.221891933805281 3 1.372728336653971 3.606618856739246 4 0.4908262937043732 1.7194209215714664 5 0.20129012498578672 0.8814280547049198 6 0.10403385412988929 0.546663822732319 7 0.06081873470203435 0.37284628160740424 8 0.040976017334760126 0.2870873968724137 9 0.026147176692730117 0.20609227184824547 >10 0.0854020378562952 1.1575205867875356 >50 0.0014855682069329708 0.08354717801473488 >100 2.568967918814972E-4 0.037781092381594536 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3064949653563263E-5 2 0.0 2.6129899307126526E-5 0.0 0.0 1.3064949653563263E-5 3 0.0 2.6129899307126526E-5 0.0 0.0 1.3064949653563263E-5 4 0.0 9.145464757494284E-5 0.0 1.3064949653563263E-5 1.3064949653563263E-5 5 0.0 9.145464757494284E-5 0.0 1.3064949653563263E-5 1.3064949653563263E-5 6 1.3064949653563263E-5 9.145464757494284E-5 0.0 2.6129899307126526E-5 1.3064949653563263E-5 7 1.3064949653563263E-5 9.145464757494284E-5 0.0 2.6129899307126526E-5 1.3064949653563263E-5 8 1.3064949653563263E-5 9.145464757494284E-5 0.0 2.6129899307126526E-5 1.3064949653563263E-5 9 1.3064949653563263E-5 1.437144461891959E-4 0.0 7.838969792137958E-5 1.3064949653563263E-5 10-11 2.6129899307126526E-5 1.6331187066954077E-4 0.0 7.838969792137958E-5 1.3064949653563263E-5 12-13 2.6129899307126526E-5 1.7637682032310405E-4 0.0 9.145464757494284E-5 1.9597424480344895E-5 14-15 3.919484896068979E-5 2.2210414411057546E-4 0.0 1.045195972285061E-4 5.879227344103468E-5 16-17 5.879227344103468E-5 2.3516909376413873E-4 0.0 1.3064949653563264E-4 1.045195972285061E-4 18-19 7.185722309459794E-5 2.48234043417702E-4 0.0 1.7637682032310405E-4 1.1105207205528773E-4 20-21 7.838969792137958E-5 2.743639427248285E-4 0.0 2.286366189373571E-4 1.1758454688206937E-4 22-23 7.838969792137958E-5 3.2009126651229996E-4 0.0 4.2461086374080605E-4 1.24117021708851E-4 24-25 8.49221727481612E-5 3.396886909926448E-4 0.0 9.602737995368998E-4 1.3718197136241425E-4 26-27 9.145464757494284E-5 3.5928611547298973E-4 0.0 0.0027109770531143773 1.5677939584275916E-4 28-29 9.145464757494284E-5 3.9194848960689787E-4 0.0 0.01518147149744051 1.5677939584275916E-4 30-31 9.145464757494284E-5 4.5074076304793255E-4 0.0 0.02518269045724319 1.6331187066954077E-4 32-33 1.045195972285061E-4 4.7033818752827746E-4 0.0 0.0381235230890976 2.090391944570122E-4 34-35 1.437144461891959E-4 4.899356120086223E-4 0.0 0.05485319112048535 2.2210414411057546E-4 36-37 1.437144461891959E-4 5.160655113157489E-4 0.0 0.07674351426503061 2.2210414411057546E-4 38-39 1.437144461891959E-4 5.421954106228754E-4 0.0 0.12460695732085962 2.2210414411057546E-4 40-41 1.5677939584275916E-4 5.944552092371285E-4 0.0 0.4326458077777474 2.286366189373571E-4 42-43 1.698443454963224E-4 6.20585108544255E-4 0.0 0.47225220265252443 2.3516909376413873E-4 44-45 1.8290929514988569E-4 6.597799575049448E-4 0.0 0.5375377560713801 2.3516909376413873E-4 46-47 1.9597424480344893E-4 6.924423316388529E-4 0.0 0.6140983610412608 2.48234043417702E-4 48-49 1.9597424480344893E-4 6.924423316388529E-4 0.0 0.6775744189330979 2.612989930712652E-4 50-51 2.0250671963023057E-4 7.577670799066693E-4 0.0 0.7373792259722838 2.743639427248285E-4 52-53 2.090391944570122E-4 7.708320295602325E-4 0.0 0.9520690111544621 2.743639427248285E-4 54-55 2.090391944570122E-4 7.773645043870141E-4 0.0 1.6921722791295137 2.743639427248285E-4 56-57 2.1557166928379382E-4 7.96961928867359E-4 0.0 2.514970145936794 2.8089641755161014E-4 58-59 2.2210414411057546E-4 7.96961928867359E-4 0.0 3.370417321928329 2.874288923783918E-4 60-61 2.3516909376413873E-4 8.100268785209223E-4 0.0 4.01557106829611 3.2009126651229996E-4 62-63 2.3516909376413873E-4 8.100268785209223E-4 0.0 4.032111294557521 3.527536406462081E-4 64-65 2.3516909376413873E-4 8.622866771351753E-4 0.0 4.042791890899309 3.527536406462081E-4 66-67 2.612989930712652E-4 8.622866771351753E-4 0.0 4.051114263828628 3.527536406462081E-4 68-69 2.743639427248285E-4 8.884165764423018E-4 0.0 4.058175869116379 3.527536406462081E-4 70-71 2.8089641755161014E-4 9.080140009226467E-4 0.0 4.065289734202745 3.6581859029977137E-4 72-73 3.0049384203195505E-4 9.145464757494284E-4 0.0 4.070692090884493 3.788835399533346E-4 74-75 3.0049384203195505E-4 9.341439002297732E-4 0.0 4.075898473321438 3.8541601478011623E-4 76-77 3.0049384203195505E-4 9.798712240172446E-4 0.0 4.080575725297414 3.9194848960689787E-4 78-79 3.0049384203195505E-4 0.0010060011233243712 0.0 4.085154990150988 4.0501343926046114E-4 80-81 3.0049384203195505E-4 0.0010060011233243712 0.0 4.087643863059991 4.2461086374080605E-4 82-83 3.0049384203195505E-4 0.0010125335981511529 0.0 4.089296579191167 4.442082882211509E-4 84-85 3.0049384203195505E-4 0.001045195972285061 0.0 4.090942762847517 4.442082882211509E-4 86-87 3.0049384203195505E-4 0.001045195972285061 0.0 4.091262854114028 4.5074076304793255E-4 88-89 3.0049384203195505E-4 0.001136650619860004 0.0 4.091315113912643 4.572732378747142E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7990 0.0 46.9165 1 TATCTCG 9545 0.0 36.775978 94-95 GTATCAA 13940 0.0 34.84186 1 CCGTCTT 4070 0.0 34.48122 92-93 TATGCCG 4000 0.0 32.88131 88-89 TGCCGTC 4230 0.0 31.907026 90-91 ATGCCGT 4085 0.0 30.400406 88-89 GCCGTCT 4290 0.0 29.56892 90-91 CTCGTAT 4575 0.0 29.227222 84-85 CGTATGC 4570 0.0 28.980448 86-87 TCAACGC 16560 0.0 28.785845 4 ATCAACG 16745 0.0 28.467817 3 CAACGCA 17050 0.0 27.93347 5 TCGTATG 4550 0.0 27.213238 84-85 AACGCAG 17540 0.0 27.20191 6 TATCAAC 17985 0.0 26.69628 2 GCTATCT 15000 0.0 26.435198 94-95 TCTCGTA 4775 0.0 25.974783 82-83 CTATCTC 15310 0.0 25.581524 94-95 ACGCAGA 20460 0.0 23.340637 7 >>END_MODULE