##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139813_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6632964 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.052159185546614 33.0 31.0 34.0 30.0 34.0 2 32.1992851159753 33.0 31.0 34.0 30.0 34.0 3 32.24732970056825 34.0 31.0 34.0 30.0 34.0 4 35.900962978240194 37.0 35.0 37.0 35.0 37.0 5 35.78445789845988 37.0 35.0 37.0 35.0 37.0 6 35.8028440980533 37.0 35.0 37.0 35.0 37.0 7 35.72003300485273 37.0 35.0 37.0 33.0 37.0 8 35.69959040935546 37.0 35.0 37.0 33.0 37.0 9 37.331066774974204 39.0 37.0 39.0 34.0 39.0 10-11 37.24045818732018 39.0 37.0 39.0 33.0 39.0 12-13 37.21760905079539 39.0 37.0 39.0 33.0 39.0 14-15 38.4178710302061 40.0 38.0 41.0 33.0 41.0 16-17 38.40235782977263 40.0 38.0 41.0 33.0 41.0 18-19 38.44939268477863 40.0 38.0 41.0 33.5 41.0 20-21 38.429200930977416 40.0 38.0 41.0 34.0 41.0 22-23 38.36001012254137 40.0 38.0 41.0 34.0 41.0 24-25 38.27275067332781 40.0 38.0 41.0 33.5 41.0 26-27 38.12870380854145 40.0 38.0 41.0 33.0 41.0 28-29 38.03408564276746 40.0 37.0 41.0 33.0 41.0 30-31 37.91607801842537 40.0 37.0 41.0 33.0 41.0 32-33 38.07492985696558 40.0 37.0 41.0 33.0 41.0 34-35 38.05915028235458 40.0 37.0 41.0 33.0 41.0 36-37 37.98213599925911 40.0 37.0 41.0 33.0 41.0 38-39 37.853402601777304 40.0 37.0 41.0 33.0 41.0 40-41 37.813346610818115 40.0 37.0 41.0 33.0 41.0 42-43 37.73586955541607 40.0 37.0 41.0 33.0 41.0 44-45 37.73645398730247 40.0 37.0 41.0 33.0 41.0 46-47 37.77005088357919 40.0 37.0 41.0 33.0 41.0 48-49 37.698851200079886 40.0 37.0 41.0 32.0 41.0 50-51 37.632412594874 40.0 36.5 41.0 32.0 41.0 52-53 37.502989614232135 39.5 36.0 41.0 32.0 41.0 54-55 37.37862141322939 39.0 36.0 41.0 32.0 41.0 56-57 37.208147663741485 39.0 36.0 41.0 31.0 41.0 58-59 37.05141859334085 39.0 35.0 40.5 31.0 41.0 60-61 36.89171014856461 39.0 35.0 40.0 31.0 41.0 62-63 36.66662674772981 38.0 35.0 40.0 31.0 41.0 64-65 36.450165772346466 38.0 35.0 40.0 31.0 41.0 66-67 36.191880588321375 37.5 35.0 40.0 30.5 41.0 68-69 35.90408803130202 37.0 34.0 39.5 30.0 41.0 70-71 35.61595863077466 36.5 34.0 39.0 30.0 41.0 72-73 35.30205047297703 36.0 34.0 39.0 30.0 40.0 74-75 34.96598727598556 35.5 34.0 38.5 29.0 40.0 76-77 33.88635049867578 35.0 32.5 37.0 28.5 39.0 78-79 34.24554334189533 35.0 33.0 37.0 29.0 39.0 80-81 34.13744722932178 35.0 33.0 36.5 29.0 39.0 82-83 33.894213740821826 35.0 33.0 36.0 29.0 37.5 84-85 33.68501024964003 35.0 33.0 36.0 29.0 37.0 86-87 33.504367728409164 35.0 33.0 35.0 29.0 37.0 88-89 33.3000206775292 35.0 33.0 35.0 29.0 36.0 90-91 33.18442402872428 35.0 33.0 35.0 29.0 36.0 92-93 33.11809645448196 35.0 33.0 35.0 29.0 36.0 94-95 33.087658563835205 34.5 33.0 35.0 29.0 35.5 96-97 33.04415333721511 34.0 33.0 35.0 29.0 35.0 98-99 33.12342337316289 34.0 33.0 35.0 29.0 35.0 100-101 32.57367219824658 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 38.0 21 268.0 22 1129.0 23 3724.0 24 9724.0 25 20552.0 26 37091.0 27 59098.0 28 85311.0 29 113911.0 30 146703.0 31 184967.0 32 232384.0 33 297168.0 34 393655.0 35 538198.0 36 814148.0 37 1328374.0 38 1554063.0 39 780983.0 40 31470.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.491962266039735 22.12947333952061 15.366569153699613 24.011995240740035 2 14.057913809854353 22.943456977597606 40.91114547293373 22.08748373961431 3 17.113917699538245 28.190202750987343 31.462646261912475 23.23323328756194 4 12.152636438249928 19.827184347751622 39.115816096695234 28.904363117303216 5 12.566041365519245 38.68104817092329 35.848061289040615 12.904849174516853 6 28.216359986274615 39.31171645134815 19.415181508598568 13.056742053778672 7 25.02603662555684 33.256550163697554 24.342465902121585 17.374947308624016 8 23.954976990678677 37.01774953097891 21.8594130768688 17.167860401473607 9 25.685108497498256 16.43872935236796 21.579975407675967 36.29618674245782 10-11 23.728788517471227 27.29495441253714 29.399021312342416 19.57723575764922 12-13 24.80206435614606 24.970495844693264 29.325434300563067 20.90200549859761 14-15 22.00614989015469 26.059556481838285 27.047395402718905 24.88689822528812 16-17 21.318274906964668 29.06179650605672 27.69890655218391 21.921022034794703 18-19 21.41737834396364 28.161246280296982 29.46383207883343 20.957543296905946 20-21 22.484977644564022 27.2690560208907 29.0951457306055 21.150820603939774 22-23 22.123195717302195 27.382861714703093 28.930971383818004 21.562971184176707 24-25 21.779971007183654 27.654914903731303 29.024947636777803 21.54016645230724 26-27 21.733164532094477 27.66733129451091 29.015022741920678 21.584481431473936 28-29 21.588751728283263 27.666013510142268 29.1519087486063 21.593326012968173 30-31 21.866074497220218 27.578759088153987 28.90095137587711 21.654215038748685 32-33 21.733330220551696 27.72471984207282 28.961770089341886 21.580179848033595 34-35 21.85507202714016 27.825448950458192 28.89284652438655 21.426632498015096 36-37 21.764485457247755 27.722193446125598 28.799285846065576 21.71403525056107 38-39 21.665567152836125 27.752430982271175 28.92191878314402 21.66008308174868 40-41 21.799513952371566 27.68046613506845 28.874892890613758 21.645127021946227 42-43 21.848637928900512 27.752014096001837 28.588956351776794 21.810391623320854 44-45 21.858030683117757 27.943559911587922 28.374621606990313 21.82378779830401 46-47 22.063132831525795 27.851114788977394 28.0608684635479 22.024883915948912 48-49 21.961241322824016 27.976922548130695 27.962098818565046 22.099737310480247 50-51 21.911344882214642 28.067617530987288 27.89813046006117 22.122907126736898 52-53 22.067279234548227 27.996258657162628 27.909018933992023 22.027443174297122 54-55 22.076361824454974 27.934511386502226 27.827293534549007 22.16183325449379 56-57 22.151625138678416 28.044254532502134 27.717622446604288 22.086497882215163 58-59 22.011910126105697 28.11809841189703 27.801425527680447 22.068565934316826 60-61 22.1680827147228 28.162694875621032 27.664657349169904 22.004565060486268 62-63 22.041165335543816 28.240994321127346 27.67977488695156 22.038065456377282 64-65 22.061335933324738 28.137346703525708 27.681764127306362 22.119553235843192 66-67 22.156288955705826 28.086387937732827 27.563796096698283 22.193527009863057 68-69 22.143962097662364 28.045015087316884 27.62889241387519 22.182130401145564 70-71 22.145852682045817 27.8403661615997 27.726718179635885 22.287062976718598 72-73 22.160848973599286 27.854841011922876 27.678578846047824 22.30573116843001 74-75 22.098605734332256 27.92940432326821 27.675601441370013 22.296388501029522 76-77 22.188586968959843 27.867823410782773 27.643588029866763 22.30000159039063 78-79 22.143205995287225 27.855893944364468 27.606946105074915 22.393953955273393 80-81 22.170218555924897 27.876734594221887 27.61229844860798 22.340748401245236 82-83 22.189928587630483 27.80168338943109 27.72026933013036 22.28811869280807 84-85 22.242360782385468 27.805490909518056 27.640256255908046 22.31189205218843 86-87 22.165708945578906 27.818750542871406 27.71619363163441 22.299346879915273 88-89 22.184710681847996 27.72879330231417 27.68276076797132 22.40373524786651 90-91 22.234080753055473 27.71512380197838 27.738007756707155 22.312787688258993 92-93 22.253864391377142 27.666841108673246 27.750279342942967 22.329015157006644 94-95 22.057473702261312 27.653296299137626 27.81048479898194 22.47874519961913 96-97 22.10701299663479 27.68572615962002 27.858119394933546 22.34914144881164 98-99 22.28662135358715 28.310507474239273 27.945237288955543 21.457633883218037 100-101 26.132716159981058 35.45378911928157 28.75108085833005 9.66241386240732 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1766.0 1 1580.0 2 2136.0 3 3049.5 4 4131.0 5 6425.5 6 8201.0 7 9476.5 8 10142.0 9 9790.5 10 9129.5 11 8583.5 12 9622.0 13 13049.5 14 20795.0 15 31418.0 16 39767.5 17 43652.5 18 43816.0 19 41282.5 20 37031.0 21 33143.0 22 31833.0 23 34455.0 24 41000.5 25 51170.0 26 64297.5 27 78994.0 28 95228.0 29 112515.0 30 129142.5 31 144942.0 32 161501.5 33 178638.5 34 193982.0 35 208340.5 36 224208.5 37 237346.5 38 246422.0 39 253719.5 40 260296.0 41 266005.0 42 268664.5 43 272032.5 44 275749.5 45 277474.0 46 277832.5 47 277290.5 48 280070.5 49 278034.0 50 268636.5 51 259688.5 52 248624.0 53 235266.5 54 221594.0 55 205439.5 56 186980.5 57 167896.0 58 148371.5 59 128358.5 60 107844.5 61 87604.5 62 69231.5 63 53596.5 64 40104.0 65 29596.0 66 21893.0 67 16308.5 68 12016.5 69 8487.5 70 5997.5 71 4303.0 72 2987.5 73 2067.0 74 1433.0 75 975.5 76 668.5 77 449.5 78 311.0 79 221.5 80 158.0 81 116.0 82 88.5 83 67.0 84 45.0 85 30.5 86 22.5 87 17.0 88 13.0 89 9.0 90 5.5 91 4.5 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00422134056509277 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 6.332010847639155E-4 20-21 0.0012513761368299898 22-23 0.0027970108925103434 24-25 3.0163137328239786E-5 26-27 0.007898260149830071 28-29 2.4909409008419834E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.034460770409725935 38-39 0.014768558564005621 40-41 0.023402752421986483 42-43 0.001083764470022682 44-45 0.005034530606650615 46-47 0.0040700659439162614 48-49 0.002207220902821765 50-51 0.002174976353311068 52-53 2.081294531898128E-4 54-55 0.002288159154928985 56-57 0.013760622357973271 58-59 0.009493426620464176 60-61 0.0031577232152670506 62-63 9.361370815555561E-4 64-65 0.002655110529033008 66-67 2.9891805252171345E-4 68-69 4.4082543092522643E-4 70-71 1.489852521361226E-4 72-73 0.0 74-75 9.566275587754365E-6 76-77 0.005963609184035719 78-79 2.8526421466663334E-4 80-81 0.0 82-83 1.1163720425528546E-4 84-85 0.0017619498582042517 86-87 0.0055461375860697765 88-89 0.07512041611177576 90-91 0.0028820816864295125 92-93 0.0015580198297250073 94-95 0.0 96-97 0.0165975603206732 98-99 3.628270175026544E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 160.0 20-21 518.0 22-23 1068.0 24-25 2428.0 26-27 3492.0 28-29 6366.0 30-31 17355.0 32-33 22469.0 34-35 31539.0 36-37 49890.0 38-39 57132.0 40-41 58275.0 42-43 66708.0 44-45 79214.0 46-47 79083.0 48-49 71678.0 50-51 64589.0 52-53 61211.0 54-55 66682.0 56-57 71275.0 58-59 71727.0 60-61 71819.0 62-63 68229.0 64-65 70539.0 66-67 76661.0 68-69 74439.0 70-71 74488.0 72-73 69907.0 74-75 70302.0 76-77 71587.0 78-79 77434.0 80-81 79010.0 82-83 74962.0 84-85 73718.0 86-87 77647.0 88-89 82686.0 90-91 89377.0 92-93 90783.0 94-95 107809.0 96-97 137912.0 98-99 517252.0 100-101 3693544.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.85131623738644 #Duplication Level Percentage of deduplicated Percentage of total 1 91.88927924416109 81.64483408948469 2 6.037998013246302 10.729681418313165 3 1.2551779499011366 3.3457263888258084 4 0.41234567246420134 1.465498229729381 5 0.17453944071419092 0.775402952139657 6 0.0769479237089912 0.4102154581966718 7 0.05029290110171071 0.31280133221985895 8 0.02397088485543821 0.17038757366244142 9 0.018282909618253795 0.146201452580792 >10 0.05915574563828778 0.8419136886680931 >50 0.0016052415273223291 0.09759366919971048 >100 4.040730630975418E-4 0.05974374697965162 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.507621630390275E-5 2 0.0 0.0 0.0 0.0 1.507621630390275E-5 3 0.0 1.507621630390275E-5 0.0 0.0 1.507621630390275E-5 4 0.0 7.538108151951374E-5 0.0 1.507621630390275E-5 1.507621630390275E-5 5 0.0 7.538108151951374E-5 0.0 1.507621630390275E-5 1.507621630390275E-5 6 1.507621630390275E-5 7.538108151951374E-5 0.0 1.507621630390275E-5 1.507621630390275E-5 7 1.507621630390275E-5 7.538108151951374E-5 0.0 1.507621630390275E-5 1.507621630390275E-5 8 1.507621630390275E-5 7.538108151951374E-5 0.0 1.507621630390275E-5 1.507621630390275E-5 9 1.507621630390275E-5 1.507621630390275E-4 0.0 1.507621630390275E-5 1.507621630390275E-5 10-11 3.01524326078055E-5 1.507621630390275E-4 0.0 9.04572978234165E-5 1.507621630390275E-5 12-13 3.01524326078055E-5 1.5830027119097885E-4 0.0 1.20609730431222E-4 2.2614324455854125E-5 14-15 3.01524326078055E-5 1.9599081195073576E-4 0.0 1.20609730431222E-4 7.538108151951376E-5 16-17 4.522864891170825E-5 2.0352892010268712E-4 0.0 1.3568594673512476E-4 1.0553351412731924E-4 18-19 4.522864891170825E-5 2.110670282546385E-4 0.0 1.80914595646833E-4 1.20609730431222E-4 20-21 4.522864891170825E-5 2.110670282546385E-4 0.0 2.110670282546385E-4 1.20609730431222E-4 22-23 4.522864891170825E-5 2.110670282546385E-4 0.0 2.110670282546385E-4 1.4322405488707612E-4 24-25 4.522864891170825E-5 2.110670282546385E-4 0.0 2.41219460862444E-4 1.6583837934293024E-4 26-27 7.538108151951374E-5 2.110670282546385E-4 0.0 3.166005423819577E-4 1.6583837934293024E-4 28-29 7.538108151951374E-5 2.110670282546385E-4 0.0 6.332010847639155E-4 1.6583837934293024E-4 30-31 7.538108151951374E-5 2.5629567716634673E-4 0.0 0.0016433075771253997 1.6583837934293024E-4 32-33 7.538108151951374E-5 2.5629567716634673E-4 0.0 0.0039047400227108127 1.80914595646833E-4 34-35 9.045729782341649E-5 2.8644810977415224E-4 0.0 0.006641073281869162 2.5629567716634673E-4 36-37 1.0553351412731924E-4 3.1660054238195776E-4 0.0 0.010952871144785348 2.5629567716634673E-4 38-39 1.0553351412731924E-4 3.1660054238195776E-4 0.0 0.017224577127208894 2.5629567716634673E-4 40-41 1.507621630390275E-4 3.316767586858605E-4 0.0 0.02418225095146001 2.5629567716634673E-4 42-43 1.507621630390275E-4 3.392148668378119E-4 0.0 0.03009212774258989 2.638337853182981E-4 44-45 1.7337648749488164E-4 3.693672994456174E-4 0.0 0.037487011839654194 2.9398621792610364E-4 46-47 2.110670282546385E-4 3.919816239014715E-4 0.0 0.045733702157888995 3.392148668378119E-4 48-49 2.2614324455854124E-4 4.0705784020537424E-4 0.0 0.0537316349071094 3.7690540759756873E-4 50-51 2.7137189347024946E-4 4.598245972690339E-4 0.0 0.06178233441339347 3.7690540759756873E-4 52-53 2.8644810977415224E-4 4.6736270542098527E-4 0.0 0.06895861337405118 4.0705784020537424E-4 54-55 3.01524326078055E-4 4.6736270542098527E-4 0.0 0.07663994558088963 4.447483809651311E-4 56-57 3.01524326078055E-4 4.6736270542098527E-4 0.0 0.0849394026561881 4.598245972690339E-4 58-59 3.0906243423000637E-4 4.7490081357293666E-4 0.0 0.09257550621411484 4.7490081357293666E-4 60-61 3.316767586858605E-4 4.82438921724888E-4 0.0 0.10052821031442354 4.975151380287908E-4 62-63 3.7690540759756873E-4 4.82438921724888E-4 0.0 0.10845830009027638 5.125913543326935E-4 64-65 3.7690540759756873E-4 5.125913543326935E-4 0.0 0.1161773228378746 5.125913543326935E-4 66-67 3.844435157495201E-4 5.201294624846448E-4 0.0 0.12430340342567817 5.125913543326935E-4 68-69 4.22134056509277E-4 5.276675706365962E-4 0.0 0.13190181644284515 5.125913543326935E-4 70-71 4.22134056509277E-4 5.276675706365962E-4 0.0 0.13985452054315387 5.276675706365962E-4 72-73 4.82438921724888E-4 5.276675706365962E-4 0.0 0.14636744598643986 6.0304865215611E-4 74-75 4.975151380287908E-4 5.276675706365962E-4 0.0 0.15177226953138898 6.0304865215611E-4 76-77 4.975151380287908E-4 5.276675706365962E-4 0.0 0.15698110226438738 6.0304865215611E-4 78-79 4.975151380287908E-4 5.42743786940499E-4 0.0 0.16157181012892577 6.0304865215611E-4 80-81 4.975151380287908E-4 5.502818950924504E-4 0.0 0.16454936284894656 6.0304865215611E-4 82-83 5.050532461807421E-4 5.578200032444017E-4 0.0 0.16639619934617467 6.0304865215611E-4 84-85 5.276675706365962E-4 5.65358111396353E-4 0.0 0.16794151151732467 6.0304865215611E-4 86-87 5.276675706365962E-4 5.728962195483045E-4 0.0 0.16825811205970664 6.181248684600127E-4 88-89 5.276675706365962E-4 6.0304865215611E-4 0.0 0.1683108788167703 6.407391929158669E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9380 0.0 51.420685 1 GTATCAA 16820 0.0 35.519657 1 ATCAACG 21460 0.0 27.473602 3 TCAACGC 21475 0.0 27.45441 4 CAACGCA 21910 0.0 26.871674 5 TATCAAC 22155 0.0 26.705677 2 AACGCAG 22490 0.0 26.215363 6 ACGCAGA 26040 0.0 22.609768 7 CGCAGAG 26220 0.0 22.470285 8 GTACATG 26690 0.0 20.900387 1 TACATGG 26700 0.0 20.459873 2 ACATGGG 27065 0.0 19.802235 3 CTTATAC 5095 0.0 19.435389 1 GCAGAGT 30850 0.0 19.004305 9 GAGTACT 15410 0.0 18.420532 12-13 CAGAGTA 29935 0.0 17.65562 10-11 AGAGTAC 28405 0.0 17.618912 10-11 CATGGGG 15945 0.0 16.45681 4 TATGCCG 3025 0.0 16.354877 42-43 GTACTTT 17490 0.0 16.325397 14-15 >>END_MODULE