##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139812_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7588404 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.080822924029874 33.0 31.0 34.0 30.0 34.0 2 32.242132864829024 34.0 31.0 34.0 30.0 34.0 3 32.297762480753526 34.0 31.0 34.0 30.0 34.0 4 35.935688980186086 37.0 35.0 37.0 35.0 37.0 5 35.818746339810055 37.0 35.0 37.0 35.0 37.0 6 35.82893926048218 37.0 35.0 37.0 35.0 37.0 7 35.749897475147606 37.0 35.0 37.0 33.0 37.0 8 35.73015498384113 37.0 35.0 37.0 33.0 37.0 9 37.37366249872832 39.0 37.0 39.0 34.0 39.0 10-11 37.28745412078746 39.0 37.0 39.0 34.0 39.0 12-13 37.26525162603362 39.0 37.0 39.0 33.5 39.0 14-15 38.49504296292079 40.0 38.0 41.0 34.0 41.0 16-17 38.477024154222676 40.0 38.0 41.0 34.0 41.0 18-19 38.512851846053536 40.0 38.0 41.0 34.0 41.0 20-21 38.488277883280446 40.0 38.0 41.0 34.0 41.0 22-23 38.42557609411402 40.0 38.0 41.0 34.0 41.0 24-25 38.34336695151724 40.0 38.0 41.0 34.0 41.0 26-27 38.20395087969537 40.0 38.0 41.0 33.0 41.0 28-29 38.112286706537745 40.0 37.5 41.0 33.0 41.0 30-31 38.00408398248373 40.0 37.0 41.0 33.0 41.0 32-33 38.16384178851176 40.0 38.0 41.0 33.5 41.0 34-35 38.15087750214187 40.0 38.0 41.0 33.0 41.0 36-37 38.0719714512406 40.0 37.0 41.0 33.0 41.0 38-39 37.94538606921466 40.0 37.0 41.0 33.0 41.0 40-41 37.90636613701397 40.0 37.0 41.0 33.0 41.0 42-43 37.83722659770454 40.0 37.0 41.0 33.0 41.0 44-45 37.83660503633861 40.0 37.0 41.0 33.0 41.0 46-47 37.87546568248865 40.0 37.0 41.0 33.0 41.0 48-49 37.8085618493233 40.0 37.0 41.0 33.0 41.0 50-51 37.746058731670715 40.0 37.0 41.0 32.5 41.0 52-53 37.61881777134753 40.0 36.5 41.0 32.0 41.0 54-55 37.506102934301595 39.5 36.0 41.0 32.0 41.0 56-57 37.34745500713231 39.0 36.0 41.0 31.5 41.0 58-59 37.19278226398852 39.0 35.5 41.0 31.0 41.0 60-61 37.04996044021038 39.0 35.0 40.0 31.0 41.0 62-63 36.837811262598706 38.5 35.0 40.0 31.0 41.0 64-65 36.62773480056743 38.0 35.0 40.0 31.0 41.0 66-67 36.38099055470321 38.0 35.0 40.0 31.0 41.0 68-69 36.09744123451137 37.0 34.5 40.0 30.0 41.0 70-71 35.820539796142704 37.0 34.0 39.0 30.0 41.0 72-73 35.502848788966816 36.0 34.0 39.0 30.0 40.5 74-75 35.16147809382868 36.0 34.0 39.0 30.0 40.0 76-77 34.075713307340706 35.0 32.5 37.0 28.5 39.0 78-79 34.418818720339004 35.0 33.5 37.0 29.0 39.0 80-81 34.29807801147791 35.0 34.0 37.0 29.0 39.0 82-83 34.038230509890525 35.0 33.0 36.0 29.0 38.5 84-85 33.81356443496904 35.0 33.0 36.0 29.0 37.0 86-87 33.61454749117969 35.0 33.0 35.5 29.0 37.0 88-89 33.40002351677679 35.0 33.0 35.0 29.0 36.5 90-91 33.27347549669439 35.0 33.0 35.0 29.0 36.0 92-93 33.1997729125965 35.0 33.0 35.0 29.0 36.0 94-95 33.16044146049408 35.0 33.0 35.0 29.0 36.0 96-97 33.1093167897729 34.0 33.0 35.0 29.0 35.0 98-99 33.1819185171579 34.0 33.0 35.0 29.0 35.0 100-101 32.639725973132585 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 1.0 18 1.0 19 11.0 20 45.0 21 249.0 22 1160.0 23 4180.0 24 10585.0 25 22389.0 26 40643.0 27 64490.0 28 93284.0 29 125792.0 30 161903.0 31 205059.0 32 257503.0 33 328629.0 34 435686.0 35 597554.0 36 898795.0 37 1484530.0 38 1860682.0 39 955678.0 40 39554.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.870558815793146 22.478455285195675 15.52280295039642 24.128182948614754 2 13.671448448400694 22.931203122360177 41.47152135196846 21.925827077270664 3 16.776241749912103 28.14765792648889 31.806516890771764 23.269583432827247 4 12.015359224416624 19.916730843534424 39.78330621300606 28.2846037190429 5 12.450786753051103 38.58047093960732 36.49072980299942 12.478012504342152 6 28.079343166231002 39.8969796547469 19.448200174898435 12.57547700412366 7 24.579120985124145 33.3260986104588 24.90449902245584 17.190281381961213 8 23.21536913427382 37.771657913838006 22.198752201385165 16.814220750503004 9 25.00134415616248 16.895160036286946 22.02459173233265 36.07890407521793 10-11 23.350021954550655 27.45809263713424 30.03217804428968 19.159707364025426 12-13 24.283136480345537 25.000250382030266 29.883846458359358 20.832766679264836 14-15 21.520632006413997 26.335821076474055 27.317621729154112 24.825925187957836 16-17 21.16244733411663 29.368085832014216 28.00630409240204 21.463162741467112 18-19 21.189873622899174 28.635012793606734 29.502670570276674 20.672443013217414 20-21 22.01728592774243 27.86568752699979 29.202728985234888 20.914297560022888 22-23 21.71391858732831 27.850513088072265 29.05326528624445 21.382303038354976 24-25 21.535474356193237 28.04899197961792 29.100045198155716 21.315488466033127 26-27 21.553357952774277 28.140279507306072 28.995165292932285 21.31119724698737 28-29 21.408962828278643 28.191627104583304 29.069024902653755 21.330385164484294 30-31 21.794242177665897 28.005106397931918 28.970690393481558 21.22996103092063 32-33 21.46560358787107 28.249703705832502 28.900339077866597 21.38435362842983 34-35 21.62182471924685 28.23052411529395 28.976942366114162 21.17070879934504 36-37 21.532989574617627 28.23733993436994 28.91262448250161 21.317046008510825 38-39 21.400568610940194 28.19764596012726 29.004977952953514 21.39680747597903 40-41 21.61086957539144 28.091631023012276 28.912222432410562 21.385276969185718 42-43 21.61380709299017 28.20908700457401 28.66327993346902 21.513825968966803 44-45 21.620226977588295 28.307229968905578 28.54341022880887 21.529132824697257 46-47 21.767478948568773 28.20506782742075 28.276876629445617 21.750576594564862 48-49 21.674049625266072 28.319588414747226 28.284723037141056 21.72163892284564 50-51 21.606410911168666 28.421230325916774 28.225097101221174 21.747261661693386 52-53 21.798349256734586 28.3273413244241 28.182521330790237 21.691788088051076 54-55 21.739056396660267 28.267172930487988 28.184263205955233 21.80950746689651 56-57 21.85544935374209 28.39121885599571 28.031240863152597 21.722090927109605 58-59 21.736463204688928 28.459091123874643 28.126954975884523 21.67749069555191 60-61 21.831571974829135 28.490056604341675 28.03292385511697 21.64544756571222 62-63 21.76803167955625 28.58245557671569 27.97940813617672 21.67010460755134 64-65 21.756809279203008 28.494406996236222 27.998087775095986 21.75069594946478 66-67 21.82347976580532 28.490986672453257 27.879809516505027 21.8057240452364 68-69 21.81008642052304 28.390140465914538 27.965450737459868 21.83432237610256 70-71 21.825592007312547 28.193651323951585 28.045813921744532 21.934942746991336 72-73 21.838448444007117 28.24709470335392 28.006819157810366 21.907637694828598 74-75 21.69967604861132 28.330689013472053 27.991766218456434 21.977868719460197 76-77 21.83494690512158 28.305311082532196 27.910508975281967 21.949233037064257 78-79 21.783314409474592 28.300016230071023 27.929039570394735 21.987629790059653 80-81 21.83124945343842 28.265688366983312 27.94756390671287 21.955498272865405 82-83 21.830441478470565 28.199157501497712 28.05301280871918 21.917388211312538 84-85 21.926033241481832 28.18561710099431 28.00877695381506 21.8795727037088 86-87 21.776277221606687 28.202752799320468 28.06707467052242 21.953895308550425 88-89 21.824450404702876 28.139010737988773 28.041334939464857 21.99520391784349 90-91 21.868859822513837 28.13039339914325 28.102043480569748 21.89870329777316 92-93 21.882500682275065 28.07203622622344 28.085813205201482 21.95964988630001 94-95 21.75139849587766 28.076037260276493 28.153788143114877 22.01877610073097 96-97 21.66949232497273 28.13233525368141 28.233750681216165 21.96442174012969 98-99 21.920092355044414 28.709597869719595 28.320584620217236 21.04972515501876 100-101 25.651467379523083 35.85889190577992 29.133872629578327 9.355768085118669 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1353.0 1 1258.5 2 1871.0 3 2736.5 4 3675.0 5 5665.0 6 7229.5 7 8333.0 8 9025.0 9 8853.5 10 8238.5 11 7647.5 12 8385.5 13 11073.0 14 17613.5 15 26964.5 16 34872.0 17 39361.0 18 40260.0 19 38927.5 20 37027.5 21 35645.5 22 36245.5 23 40617.5 24 49255.0 25 62257.5 26 78824.5 27 96980.5 28 116686.5 29 137937.0 30 157979.0 31 178168.0 32 199342.0 33 218441.0 34 236924.0 35 254275.0 36 271434.0 37 286189.5 38 296939.5 39 305842.0 40 314008.5 41 320483.0 42 322801.5 43 324343.0 44 325492.0 45 324867.5 46 324562.0 47 324523.0 48 318577.0 49 308092.5 50 297246.0 51 282923.0 52 264924.5 53 245562.5 54 225810.5 55 205982.5 56 187070.5 57 167349.0 58 146519.0 59 125881.0 60 104883.0 61 84717.5 62 66542.5 63 50990.5 64 38200.0 65 28380.5 66 21422.5 67 16500.5 68 12513.5 69 8876.0 70 6166.5 71 4496.5 72 3195.0 73 2153.5 74 1423.0 75 948.5 76 633.0 77 419.5 78 281.5 79 196.0 80 145.5 81 104.0 82 70.5 83 49.0 84 34.0 85 22.5 86 15.5 87 12.5 88 10.5 89 7.0 90 4.5 91 4.5 92 4.5 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003927044474701136 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.732430692936222E-4 20-21 0.0013244382915536747 22-23 0.0028468568920626074 24-25 1.3183068326195251E-5 26-27 0.008288738775748667 28-29 2.5070896206027876E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03531682005455844 38-39 0.015190255256161321 40-41 0.024249054059726317 42-43 0.0014977452778450852 44-45 0.0054776451292751875 46-47 0.004527585572764728 48-49 0.0025433063250686005 50-51 0.0022126775718361836 52-53 2.594300480385179E-4 54-55 0.002546973097123652 56-57 0.014315256974310808 58-59 0.009665348290342003 60-61 0.0034548530863241335 62-63 0.0011952395663579498 64-65 0.0029410872506639386 66-67 2.883932249416491E-4 68-69 4.420871375852537E-4 70-71 2.638804304993321E-4 72-73 0.0 74-75 0.0 76-77 0.005680761155553193 78-79 2.946321639494987E-4 80-81 0.0 82-83 1.386570115167647E-4 84-85 0.0017845451009929456 86-87 0.0053793733948859735 88-89 0.07773368911200883 90-91 0.0030054620123430454 92-93 0.001371105215984758 94-95 0.0 96-97 0.016981500078968884 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 162.0 20-21 676.0 22-23 1280.0 24-25 2878.0 26-27 3641.0 28-29 6116.0 30-31 17621.0 32-33 23379.0 34-35 32987.0 36-37 52424.0 38-39 59084.0 40-41 60985.0 42-43 69007.0 44-45 81379.0 46-47 80590.0 48-49 73934.0 50-51 67659.0 52-53 66003.0 54-55 72630.0 56-57 76731.0 58-59 77058.0 60-61 76379.0 62-63 73024.0 64-65 76903.0 66-67 82340.0 68-69 80379.0 70-71 79834.0 72-73 75836.0 74-75 77735.0 76-77 79330.0 78-79 84225.0 80-81 85892.0 82-83 82501.0 84-85 81755.0 86-87 86670.0 88-89 91851.0 90-91 98991.0 92-93 100478.0 94-95 121626.0 96-97 158314.0 98-99 598250.0 100-101 4369867.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.7464873369632 #Duplication Level Percentage of deduplicated Percentage of total 1 91.27339654170422 80.08919933848269 2 6.360331814033354 11.161935499579238 3 1.3900687707330432 3.6592095536590494 4 0.4661042361720695 1.6359603782790957 5 0.2026172892328046 0.8889477701958048 6 0.10426787383520503 0.5489483802679735 7 0.060383016271555984 0.3708878300847811 8 0.035005196306834 0.24572664115724163 9 0.023389611046532165 0.18471205885599262 >10 0.08321350767670155 1.1127409430578712 >50 9.91164669061447E-4 0.055585099672278135 >100 2.0904311398168898E-4 0.03621486293202984 >500 2.193520475056736E-5 0.009931643775937464 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.6356003185913664E-5 0.0 1.3178001592956832E-5 0.0 3 0.0 2.6356003185913664E-5 0.0 1.3178001592956832E-5 0.0 4 0.0 1.0542401274365465E-4 0.0 2.6356003185913664E-5 0.0 5 0.0 1.0542401274365465E-4 0.0 2.6356003185913664E-5 0.0 6 0.0 1.0542401274365465E-4 0.0 2.6356003185913664E-5 0.0 7 0.0 1.0542401274365465E-4 0.0 3.95340047788705E-5 0.0 8 2.6356003185913664E-5 1.0542401274365465E-4 0.0 5.271200637182733E-5 0.0 9 3.95340047788705E-5 1.7131402070843884E-4 0.0 5.271200637182733E-5 0.0 10-11 4.612300557534892E-5 1.7131402070843884E-4 0.0 7.9068009557741E-5 0.0 12-13 5.271200637182733E-5 1.7131402070843884E-4 0.0 1.0542401274365465E-4 6.589000796478416E-6 14-15 6.589000796478417E-5 3.096830374344856E-4 0.0 1.1201301354013307E-4 1.9767002389435247E-5 16-17 7.9068009557741E-5 3.16272038230964E-4 0.0 1.1860201433661149E-4 2.6356003185913664E-5 18-19 7.9068009557741E-5 3.2945003982392087E-4 0.0 1.251910151330899E-4 3.2945003982392084E-5 20-21 7.9068009557741E-5 3.4262804141687767E-4 0.0 1.9108102309787405E-4 4.612300557534892E-5 22-23 7.9068009557741E-5 4.216960509746187E-4 0.0 2.108480254873093E-4 5.930100716830575E-5 24-25 7.9068009557741E-5 4.74408057346446E-4 0.0 2.2402602708026614E-4 6.589000796478417E-5 26-27 7.9068009557741E-5 4.941750597358812E-4 0.0 2.503820302661798E-4 7.247900876126258E-5 28-29 7.9068009557741E-5 5.07353061328838E-4 0.0 5.139420621253165E-4 7.9068009557741E-5 30-31 7.9068009557741E-5 5.468870661077085E-4 0.0 0.0014693471776146868 8.56570103542194E-5 32-33 9.224601115069783E-5 5.666540684971438E-4 0.0 0.004039057488241269 9.224601115069782E-5 34-35 1.0542401274365465E-4 6.523110788513632E-4 0.0 0.007603706919136092 1.0542401274365465E-4 36-37 1.0542401274365465E-4 7.379680892055827E-4 0.0 0.012927619562690652 1.0542401274365465E-4 38-39 1.1201301354013307E-4 7.972690963738883E-4 0.0 0.02103867954315558 1.0542401274365465E-4 40-41 1.58136019115482E-4 8.763371059316294E-4 0.0 0.030184212648667625 1.0542401274365465E-4 42-43 1.7131402070843884E-4 8.895151075245863E-4 0.0 0.03797900059090159 1.0542401274365465E-4 44-45 2.2402602708026614E-4 9.356381130999352E-4 0.0 0.04734197072269742 1.1201301354013307E-4 46-47 3.0309403663800714E-4 9.883501194717624E-4 0.0 0.05829947904724103 1.3836901672604677E-4 48-49 3.294500398239208E-4 0.0010081171218611976 0.0 0.0681368572363833 1.9767002389435248E-4 50-51 3.294500398239208E-4 0.0011003631330118954 0.0 0.07831027446614597 1.9767002389435248E-4 52-53 3.294500398239208E-4 0.0011201301354013308 0.0 0.08802905064095165 1.9767002389435248E-4 54-55 3.294500398239208E-4 0.0011333081369942876 0.0 0.09797185284283758 1.9767002389435248E-4 56-57 3.294500398239208E-4 0.001172842141773158 0.0 0.106847236915694 2.042590246908309E-4 58-59 3.623950438063129E-4 0.001251910151330899 0.0 0.11500441990173428 2.108480254873093E-4 60-61 3.689840446027913E-4 0.0012914441561097695 0.0 0.12256200381529503 2.108480254873093E-4 62-63 3.689840446027913E-4 0.0013243891600921618 0.0 0.1295661116619516 2.3720402867322298E-4 64-65 3.755730453992697E-4 0.0013968681688534242 0.0 0.1368535465428567 2.3720402867322298E-4 66-67 3.8216204619574815E-4 0.0013968681688534242 0.0 0.14414098142376183 2.4379302946970138E-4 68-69 3.8216204619574815E-4 0.001410046170446381 0.0 0.152186151396262 2.503820302661798E-4 70-71 3.8216204619574815E-4 0.0014429911744287733 0.0 0.15943405227238824 2.6356003185913667E-4 72-73 3.8216204619574815E-4 0.0014627581768182085 0.0 0.16577926003939694 3.16272038230964E-4 74-75 3.9534004778870495E-4 0.0014693471776146868 0.0 0.1714392117235719 3.16272038230964E-4 76-77 3.9534004778870495E-4 0.0015418261863759494 0.0 0.17686195937907367 3.2286103902744244E-4 78-79 4.019290485851834E-4 0.0015813601911548198 0.0 0.18156650594775925 3.294500398239208E-4 80-81 4.085180493816618E-4 0.0015813601911548198 0.0 0.18417575026316468 3.6898404460279134E-4 82-83 4.1510705017814024E-4 0.0015945381927477767 0.0 0.18590206847184204 4.085180493816618E-4 84-85 4.216960509746186E-4 0.0016208941959336904 0.0 0.18737800465025323 4.085180493816618E-4 86-87 4.216960509746186E-4 0.0016736062023055178 0.0 0.18766792068529825 4.085180493816618E-4 88-89 4.216960509746186E-4 0.0017856192158456508 0.0 0.18770745469007713 4.085180493816618E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8250 0.0 45.211796 1 GTATCAA 14315 0.0 33.372005 1 TCAACGC 17215 0.0 26.973791 4 ATCAACG 17310 0.0 26.825758 3 CAACGCA 17715 0.0 26.212467 5 TATCAAC 18525 0.0 25.38247 2 AACGCAG 18400 0.0 25.37267 6 ACGCAGA 20940 0.0 22.235218 7 CGCAGAG 21280 0.0 21.89956 8 GTACATG 20180 0.0 18.83499 1 TACATGG 20335 0.0 18.527285 2 GCAGAGT 25820 0.0 18.097378 9 ACATGGG 20305 0.0 18.01982 3 AGAGTAC 23030 0.0 17.835104 10-11 GAGTACT 14510 0.0 17.309496 12-13 CAGAGTA 25375 0.0 16.482845 10-11 CATGGGG 14445 0.0 16.203138 4 AGTACTT 15895 0.0 15.748748 12-13 CTTATAC 5765 0.0 15.704661 1 GTACTTT 16685 0.0 15.054129 14-15 >>END_MODULE