##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139811_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8650918 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.05182282388991 33.0 31.0 34.0 30.0 34.0 2 32.20943684820501 33.0 31.0 34.0 30.0 34.0 3 32.26249965610586 34.0 31.0 34.0 30.0 34.0 4 35.90937955948721 37.0 35.0 37.0 35.0 37.0 5 35.78667385357254 37.0 35.0 37.0 35.0 37.0 6 35.80058809943638 37.0 35.0 37.0 35.0 37.0 7 35.720412215212306 37.0 35.0 37.0 33.0 37.0 8 35.6996574236399 37.0 35.0 37.0 33.0 37.0 9 37.3367406788505 39.0 37.0 39.0 34.0 39.0 10-11 37.246380384139584 39.0 37.0 39.0 33.0 39.0 12-13 37.22564142903678 39.0 37.0 39.0 33.0 39.0 14-15 38.44615409601617 40.0 38.0 41.0 33.5 41.0 16-17 38.426285279781865 40.0 38.0 41.0 33.0 41.0 18-19 38.45651669568478 40.0 38.0 41.0 33.5 41.0 20-21 38.42895929636829 40.0 38.0 41.0 34.0 41.0 22-23 38.36547402287072 40.0 38.0 41.0 34.0 41.0 24-25 38.284068743451854 40.0 38.0 41.0 33.5 41.0 26-27 38.13945071042411 40.0 38.0 41.0 33.0 41.0 28-29 38.043751536743144 40.0 37.0 41.0 33.0 41.0 30-31 37.93439590305708 40.0 37.0 41.0 33.0 41.0 32-33 38.10480305640566 40.0 37.0 41.0 33.0 41.0 34-35 38.0957273085924 40.0 37.0 41.0 33.0 41.0 36-37 38.016132998744936 40.0 37.0 41.0 33.0 41.0 38-39 37.8911659711797 40.0 37.0 41.0 33.0 41.0 40-41 37.84869731166535 40.0 37.0 41.0 33.0 41.0 42-43 37.77186932118923 40.0 37.0 41.0 33.0 41.0 44-45 37.77486502515853 40.0 37.0 41.0 33.0 41.0 46-47 37.81281780831801 40.0 37.0 41.0 33.0 41.0 48-49 37.742669858101486 40.0 37.0 41.0 33.0 41.0 50-51 37.68088603962521 40.0 37.0 41.0 32.0 41.0 52-53 37.547089154834055 40.0 36.0 41.0 32.0 41.0 54-55 37.43000491457443 39.0 36.0 41.0 32.0 41.0 56-57 37.27060768603144 39.0 36.0 41.0 31.0 41.0 58-59 37.11570024049985 39.0 35.5 40.5 31.0 41.0 60-61 36.96614665233504 39.0 35.0 40.0 31.0 41.0 62-63 36.745548671613044 38.0 35.0 40.0 31.0 41.0 64-65 36.528807134944905 38.0 35.0 40.0 31.0 41.0 66-67 36.27725103237772 37.5 35.0 40.0 30.5 41.0 68-69 35.987165267805494 37.0 34.0 40.0 30.0 41.0 70-71 35.701632781292446 36.5 34.0 39.0 30.0 41.0 72-73 35.38337587256538 36.0 34.0 39.0 30.0 40.5 74-75 35.04031319937091 36.0 34.0 38.5 29.5 40.0 76-77 33.9510683509851 35.0 32.5 37.0 28.5 39.0 78-79 34.303527000560564 35.0 33.0 37.0 29.0 39.0 80-81 34.18604311382528 35.0 33.0 37.0 29.0 39.0 82-83 33.93393487569063 35.0 33.0 36.0 29.0 38.5 84-85 33.71596133514541 35.0 33.0 36.0 29.0 37.0 86-87 33.52413738545029 35.0 33.0 35.5 29.0 37.0 88-89 33.31727721106131 35.0 33.0 35.0 29.0 36.5 90-91 33.193592001075984 35.0 33.0 35.0 29.0 36.0 92-93 33.1287417326421 35.0 33.0 35.0 29.0 36.0 94-95 33.094260402487976 34.5 33.0 35.0 29.0 36.0 96-97 33.048992075807206 34.0 33.0 35.0 29.0 35.0 98-99 33.12401255111941 34.0 33.0 35.0 29.0 35.0 100-101 32.61521643023558 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 1.0 16 1.0 17 0.0 18 4.0 19 13.0 20 54.0 21 325.0 22 1452.0 23 4883.0 24 12886.0 25 27357.0 26 48714.0 27 77128.0 28 111961.0 29 149254.0 30 192088.0 31 241026.0 32 303025.0 33 385462.0 34 509591.0 35 697380.0 36 1046198.0 37 1723774.0 38 2079286.0 39 999108.0 40 39946.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.8996078797649 22.234102785392256 15.494413425257298 24.37187590958555 2 13.902380914673612 22.91449027192734 40.98379265305009 22.199336160348963 3 16.978082557249994 27.76698380449335 31.573215698033437 23.681717940223223 4 12.244503993680208 19.816602122456832 39.48814449518537 28.450749388677593 5 12.708200447628796 38.30677854072828 36.336039712779616 12.648981298863312 6 28.51897336213336 39.53440548159167 19.312759640075193 12.633861516199785 7 24.912107593668097 33.065196086704326 24.761464621442485 17.261231698185096 8 23.414775171837256 37.555320718564204 22.001688144541422 17.028215965057118 9 25.13785242213601 16.77719058254858 21.808737523578422 36.27621947173699 10-11 23.52063098968225 27.228214392969623 29.891336387652736 19.359818229695392 12-13 24.443522898004748 24.827106488993795 29.728395860901458 21.000974752099992 14-15 21.679704974662805 26.16312511573916 27.141373898122716 25.015796011475317 16-17 21.340082058343405 29.11308372128831 27.848298874177285 21.698535346191004 18-19 21.394362244964306 28.462452775717136 29.291918242928677 20.851266736389885 20-21 22.12843921520755 27.696590432040914 29.038315914906544 21.136654437844992 22-23 21.884931750112997 27.69878125346299 28.858495486705216 21.557791509718797 24-25 21.73385691886972 27.836999600014202 28.857610952695868 21.571532528420214 26-27 21.694471875338387 27.934736735915923 28.801719446585956 21.569071942159738 28-29 21.665850023023623 27.98843685841946 28.811170365598443 21.53454275295848 30-31 21.89614793278536 27.83080338600411 28.731162705867035 21.54188597534349 32-33 21.721540940227232 27.983649232120268 28.684225504921145 21.610584322731356 34-35 21.820150015130178 28.017782575199718 28.703060397927427 21.459007011742685 36-37 21.806986410080924 27.973305875921962 28.645257211729398 21.57445050226772 38-39 21.678236903549767 28.046590457268188 28.692136525648998 21.583036113533048 40-41 21.875674768165116 27.92844627585046 28.60511092594125 21.590768030043176 42-43 21.800180735382067 28.037882519604633 28.41156011309145 21.750376631921846 44-45 21.89796248147151 28.085415492865295 28.25311796834622 21.76350405731698 46-47 21.957604336952375 28.071776016200268 28.029639812834272 21.940979834013085 48-49 21.8731928502991 28.196184387908158 28.041980462350885 21.888642299441855 50-51 21.893344636965413 28.25826851258525 27.960723999382868 21.88766285106647 52-53 22.03460183888869 28.141290957657745 27.906374430565776 21.91773277288779 54-55 21.975108981068043 28.093138575875532 27.92373475467395 22.00801768838247 56-57 22.030853751433554 28.15485982618816 27.874490987290347 21.939795435087937 58-59 21.967117915741106 28.207284737139194 27.889399721366466 21.936197625753234 60-61 22.0635109295353 28.185446221766508 27.89040852520639 21.8606343234918 62-63 22.038179919131515 28.259307270957905 27.861313927269897 21.84119888264068 64-65 21.98193171540898 28.192353263741065 27.844702944247135 21.981012076602823 66-67 22.041373973795377 28.202784402273707 27.75369405145238 22.002147572478535 68-69 22.00172994302626 28.173656366008874 27.803802685315887 22.020811005648984 70-71 22.02676461833349 27.99862086695939 27.868377146117464 22.10623736858966 72-73 22.033735874328737 28.032199427475536 27.8032262847131 22.13083841348262 74-75 21.92377833363234 28.12073798432138 27.812294578824844 22.143189103221435 76-77 22.035146919666847 28.03385431153301 27.765955279457515 22.16504348934263 78-79 22.007771579822293 28.040346042822378 27.72742594691653 22.224456430438796 80-81 22.002509988205844 28.03684592601326 27.778289225655868 22.182354860125027 82-83 22.013406956813313 27.999622814481818 27.85600159550679 22.13096863319808 84-85 22.072396467914203 28.005383276564267 27.806890804847516 22.11532945067401 86-87 22.003363164220673 27.962492052908367 27.868436934779822 22.16570784809114 88-89 22.018143769756602 27.942800008824488 27.84007355837869 22.198982663040223 90-91 22.070162280993607 27.92265097899414 27.877760879263008 22.129425860749244 92-93 22.10112523291655 27.8462628845697 27.903918624997846 22.1486932575159 94-95 21.95186413298755 27.840409352134117 27.97420325762545 22.23352325725288 96-97 21.89623104147498 27.907815035320134 28.050287451378125 22.145666471826765 98-99 22.11026279910445 28.499984245831953 28.11279663896841 21.276956316095188 100-101 22.677474511430546 31.147978348978082 25.322643885408258 20.851903254183114 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1490.0 1 1375.5 2 1960.5 3 2801.5 4 3721.0 5 5798.5 6 7507.5 7 8645.5 8 9335.5 9 9246.0 10 8721.0 11 8230.5 12 9121.0 13 11988.0 14 18745.0 15 28286.5 16 36183.5 17 40619.0 18 42116.5 19 41445.5 20 39556.0 21 37989.0 22 38447.5 23 42756.5 24 51660.5 25 65245.0 26 82646.0 27 101916.5 28 123932.0 29 147771.5 30 170179.5 31 192299.0 32 214836.0 33 236155.0 34 256599.5 35 276229.0 36 295965.5 37 314113.5 38 328976.5 39 341357.0 40 352480.0 41 361825.0 42 366986.5 43 370408.5 44 372800.5 45 373985.5 46 373420.0 47 370322.5 48 365141.5 49 356852.5 50 345562.5 51 330184.0 52 311611.5 53 291455.0 54 269578.5 55 247114.5 56 225552.0 57 202551.5 58 177388.5 59 151665.5 60 125647.5 61 101606.5 62 80583.5 63 62308.0 64 46765.5 65 34960.0 66 26101.0 67 19527.5 68 14712.0 69 10569.0 70 7428.5 71 5355.5 72 3762.5 73 2556.0 74 1703.0 75 1122.0 76 751.0 77 486.5 78 324.0 79 215.0 80 149.0 81 117.5 82 90.0 83 69.0 84 49.0 85 31.0 86 23.0 87 19.5 88 15.0 89 9.5 90 6.5 91 5.5 92 5.5 93 3.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003872421400827057 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 5.779733434070234E-6 14-15 0.0 16-17 0.0 18-19 5.259557425003913E-4 20-21 0.0012600319204233198 22-23 0.0028266725982473936 24-25 2.8909054946226558E-5 26-27 0.007617469976207697 28-29 1.678230251801667E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03449535220363582 38-39 0.014633696631613232 40-41 0.023697472608378494 42-43 0.0013183441597353724 44-45 0.005692606278418416 46-47 0.004507618241798917 48-49 0.0027386628784509086 50-51 0.002210228299725688 52-53 1.8904698327961353E-4 54-55 0.0024555285334324026 56-57 0.014417844959635821 58-59 0.009857388860214884 60-61 0.0033178731395108498 62-63 0.0011356498553739948 64-65 0.0029937710096774655 66-67 2.2407276145030482E-4 68-69 5.155159651513957E-4 70-71 1.8095172674229197E-4 72-73 0.0 74-75 0.0 76-77 0.005699808222041989 78-79 2.0495788737608008E-4 80-81 7.424242840449978E-6 82-83 1.506329672600752E-4 84-85 0.0017875691069251267 86-87 0.005379161098899055 88-89 0.07632076893292794 90-91 0.0028185639912915983 92-93 0.0013047804955540012 94-95 0.0 96-97 0.017295585823825236 98-99 2.6701972608226434E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 208.0 20-21 671.0 22-23 1418.0 24-25 3081.0 26-27 4052.0 28-29 6995.0 30-31 19803.0 32-33 26052.0 34-35 36877.0 36-37 58413.0 38-39 65024.0 40-41 66871.0 42-43 75089.0 44-45 88470.0 46-47 89065.0 48-49 81677.0 50-51 74624.0 52-53 73201.0 54-55 79970.0 56-57 83613.0 58-59 84332.0 60-61 83084.0 62-63 79151.0 64-65 83212.0 66-67 89277.0 68-69 89897.0 70-71 89570.0 72-73 86314.0 74-75 87702.0 76-77 89029.0 78-79 95251.0 80-81 96691.0 82-83 93909.0 84-85 93414.0 86-87 98406.0 88-89 104651.0 90-91 112676.0 92-93 115062.0 94-95 140650.0 96-97 183111.0 98-99 696993.0 100-101 5023362.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.93816455830601 #Duplication Level Percentage of deduplicated Percentage of total 1 91.49622481859221 80.46010074561124 2 6.189070575753228 10.885110135071143 3 1.3355442439919483 3.52335928509187 4 0.4596738308394 1.6169149191800833 5 0.20462774040085666 0.8997293954282429 6 0.10979028679342505 0.5792853784166293 7 0.061565696709520244 0.37897820578719854 8 0.03556504253220344 0.2502019650176047 9 0.02461499034211232 0.19481373641752078 >10 0.0816748339439353 1.0957814093422067 >50 0.0014430156647712601 0.0826041330800541 >100 2.049244363133113E-4 0.033120691556210745 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1559466868140468E-5 0.0 0.0 0.0 3 0.0 2.3118933736280937E-5 0.0 0.0 0.0 4 0.0 5.7797334340702336E-5 0.0 0.0 0.0 5 1.1559466868140468E-5 5.7797334340702336E-5 0.0 0.0 0.0 6 2.3118933736280937E-5 5.7797334340702336E-5 0.0 0.0 0.0 7 2.3118933736280937E-5 5.7797334340702336E-5 0.0 0.0 0.0 8 2.3118933736280937E-5 5.7797334340702336E-5 0.0 0.0 0.0 9 2.3118933736280937E-5 1.1559466868140467E-4 0.0 0.0 1.1559466868140468E-5 10-11 4.623786747256187E-5 1.1559466868140467E-4 0.0 1.1559466868140468E-5 1.1559466868140468E-5 12-13 4.623786747256187E-5 1.1559466868140467E-4 0.0 1.1559466868140468E-5 1.1559466868140468E-5 14-15 4.623786747256187E-5 1.9073120332431772E-4 0.0 1.73392003022107E-5 2.3118933736280937E-5 16-17 5.7797334340702336E-5 2.1385013706059865E-4 0.0 2.3118933736280937E-5 3.46784006044214E-5 18-19 5.7797334340702336E-5 2.254096039287391E-4 0.0 2.889866717035117E-5 3.46784006044214E-5 20-21 5.7797334340702336E-5 2.3118933736280934E-4 0.0 3.46784006044214E-5 3.46784006044214E-5 22-23 6.357706777477257E-5 2.4274880423094984E-4 0.0 3.46784006044214E-5 3.46784006044214E-5 24-25 7.513653464291304E-5 2.8320693826944146E-4 0.0 4.0458134038491635E-5 3.46784006044214E-5 26-27 8.091626807698327E-5 3.0054613857165215E-4 0.0 8.66960015110535E-5 4.0458134038491635E-5 28-29 8.091626807698327E-5 3.0054613857165215E-4 0.0 3.063258720057224E-4 5.779733434070234E-5 30-31 9.247573494512375E-5 3.236650723079331E-4 0.0 0.0011906250874184681 6.93568012088428E-5 32-33 1.0403520181326421E-4 3.236650723079331E-4 0.0 0.003230870989645261 6.93568012088428E-5 34-35 1.0403520181326421E-4 3.3522453917607354E-4 0.0 0.006039821438603394 9.247573494512375E-5 36-37 1.0403520181326421E-4 3.6412320634642475E-4 0.0 0.010062515908716277 9.247573494512375E-5 38-39 1.0403520181326421E-4 4.045813403849164E-4 0.0 0.016408663219325395 9.247573494512375E-5 40-41 1.2715413554954515E-4 4.277002741211973E-4 0.0 0.02346571774232515 9.247573494512375E-5 42-43 1.2715413554954515E-4 4.565989412915485E-4 0.0 0.02962691358304402 9.247573494512375E-5 44-45 1.2715413554954515E-4 4.970570753300401E-4 0.0 0.036915157443406586 1.1559466868140469E-4 46-47 1.2715413554954515E-4 5.317354759344615E-4 0.0 0.04508770051918189 1.3293386898361538E-4 48-49 1.2715413554954515E-4 5.317354759344615E-4 0.0 0.05312730972597359 1.387136024176856E-4 50-51 1.3293386898361538E-4 5.43294942802602E-4 0.0 0.060929949861968404 1.5027306928582608E-4 52-53 1.387136024176856E-4 5.43294942802602E-4 0.0 0.06820663425546283 1.560528027198963E-4 54-55 1.387136024176856E-4 5.43294942802602E-4 0.0 0.07642541519871071 1.6183253615396654E-4 56-57 1.387136024176856E-4 5.664138765388829E-4 0.0 0.08463263667509044 1.8495146989024747E-4 58-59 1.387136024176856E-4 5.664138765388829E-4 0.0 0.09233124160927199 2.1385013706059865E-4 60-61 1.6183253615396654E-4 5.664138765388829E-4 0.0 0.10016278041243715 2.1962987049466888E-4 62-63 1.6183253615396654E-4 5.721936099729531E-4 0.0 0.10739322693845901 2.254096039287391E-4 64-65 1.6183253615396654E-4 6.357706777477257E-4 0.0 0.11494733853678882 2.3118933736280934E-4 66-67 1.6183253615396654E-4 6.357706777477257E-4 0.0 0.12305052481135528 2.3118933736280934E-4 68-69 1.6183253615396654E-4 6.646693449180768E-4 0.0 0.13104967588410849 2.3118933736280934E-4 70-71 1.7339200302210703E-4 6.820085452202877E-4 0.0 0.13890433362100993 2.3118933736280934E-4 72-73 1.849514698902475E-4 7.051274789565686E-4 0.0 0.14536029586686638 2.3118933736280934E-4 74-75 1.849514698902475E-4 7.513653464291304E-4 0.0 0.15072388849368357 2.3118933736280934E-4 76-77 1.849514698902475E-4 7.860437470335518E-4 0.0 0.15581005391566538 2.369690707968796E-4 78-79 1.849514698902475E-4 7.976032139016923E-4 0.0 0.16065347053341622 2.4852853766502007E-4 80-81 1.849514698902475E-4 7.976032139016923E-4 0.0 0.16329480871278634 2.6008800453316053E-4 82-83 1.849514698902475E-4 8.091626807698327E-4 0.0 0.16517322207885915 2.8320693826944146E-4 84-85 1.849514698902475E-4 8.091626807698327E-4 0.0 0.1667395298394922 2.889866717035117E-4 86-87 1.849514698902475E-4 8.207221476379732E-4 0.0 0.16704007597806383 2.889866717035117E-4 88-89 1.9651093675838796E-4 8.554005482423946E-4 0.0 0.16709209357897045 2.889866717035117E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9110 0.0 44.932724 1 GTATCAA 15825 0.0 33.51788 1 TCAACGC 18360 0.0 27.610813 4 ATCAACG 18565 0.0 27.351057 3 CAACGCA 18960 0.0 26.75915 5 AACGCAG 19775 0.0 25.762234 6 TATCAAC 20205 0.0 25.381023 2 ACGCAGA 22885 0.0 22.169695 7 CGCAGAG 23260 0.0 21.830284 8 GTACATG 21625 0.0 18.87076 1 TACATGG 21675 0.0 18.266665 2 GCAGAGT 28325 0.0 17.882278 9 AGAGTAC 25110 0.0 17.51899 10-11 ACATGGG 22015 0.0 17.393782 3 GAGTACT 15740 0.0 17.16812 12-13 CAGAGTA 27675 0.0 16.455399 10-11 CATGGGG 16520 0.0 15.7995405 4 GTACTTT 18040 0.0 14.991496 14-15 AGTACTT 18205 0.0 14.808995 12-13 GTGGTAT 4765 0.0 13.804584 1 >>END_MODULE