##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139810_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7338689 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.05645913050682 33.0 31.0 34.0 30.0 34.0 2 32.20618873479991 33.0 31.0 34.0 30.0 34.0 3 32.26113042806419 34.0 31.0 34.0 30.0 34.0 4 35.90842001888893 37.0 35.0 37.0 35.0 37.0 5 35.78678085418254 37.0 35.0 37.0 35.0 37.0 6 35.80141562069193 37.0 35.0 37.0 35.0 37.0 7 35.721917906590676 37.0 35.0 37.0 33.0 37.0 8 35.70085310877733 37.0 35.0 37.0 33.0 37.0 9 37.33932927257171 39.0 37.0 39.0 34.0 39.0 10-11 37.248189833361245 39.0 37.0 39.0 33.0 39.0 12-13 37.22880040290575 39.0 37.0 39.0 33.0 39.0 14-15 38.45399484839867 40.0 38.0 41.0 34.0 41.0 16-17 38.43630585789914 40.0 38.0 41.0 33.0 41.0 18-19 38.466578090446404 40.0 38.0 41.0 33.5 41.0 20-21 38.434910336810205 40.0 38.0 41.0 34.0 41.0 22-23 38.37071385676116 40.0 38.0 41.0 34.0 41.0 24-25 38.2918675625583 40.0 38.0 41.0 33.5 41.0 26-27 38.15276703923464 40.0 38.0 41.0 33.0 41.0 28-29 38.056656061737314 40.0 37.0 41.0 33.0 41.0 30-31 37.95235688032759 40.0 37.0 41.0 33.0 41.0 32-33 38.11742372426821 40.0 37.5 41.0 33.0 41.0 34-35 38.105123627877774 40.0 37.5 41.0 33.0 41.0 36-37 38.02679741277747 40.0 37.0 41.0 33.0 41.0 38-39 37.90307745702594 40.0 37.0 41.0 33.0 41.0 40-41 37.85466195310043 40.0 37.0 41.0 33.0 41.0 42-43 37.77820914037811 40.0 37.0 41.0 33.0 41.0 44-45 37.783301843224166 40.0 37.0 41.0 33.0 41.0 46-47 37.82224103223512 40.0 37.0 41.0 33.0 41.0 48-49 37.75441810639131 40.0 37.0 41.0 33.0 41.0 50-51 37.69240042597598 40.0 37.0 41.0 32.0 41.0 52-53 37.56100289002291 40.0 36.5 41.0 32.0 41.0 54-55 37.44483831024513 39.0 36.0 41.0 32.0 41.0 56-57 37.28755985001651 39.0 36.0 41.0 31.0 41.0 58-59 37.13321808078261 39.0 35.5 40.5 31.0 41.0 60-61 36.98519268313382 39.0 35.0 40.0 31.0 41.0 62-63 36.76870765549588 38.5 35.0 40.0 31.0 41.0 64-65 36.55346794228571 38.0 35.0 40.0 31.0 41.0 66-67 36.30340142760916 38.0 35.0 40.0 30.5 41.0 68-69 36.01438713279168 37.0 34.0 40.0 30.0 41.0 70-71 35.73336864205194 37.0 34.0 39.0 30.0 41.0 72-73 35.41287580030556 36.0 34.0 39.0 30.0 40.5 74-75 35.06925780040339 36.0 34.0 38.5 29.5 40.0 76-77 33.97897034221026 35.0 32.5 37.0 28.5 39.0 78-79 34.333509810873856 35.0 33.0 37.0 29.0 39.0 80-81 34.2186150200106 35.0 33.0 37.0 29.0 39.0 82-83 33.96354116091219 35.0 33.0 36.0 29.0 38.5 84-85 33.73990343753867 35.0 33.0 36.0 29.0 37.0 86-87 33.54620340398256 35.0 33.0 35.5 29.0 37.0 88-89 33.335080986370926 35.0 33.0 35.0 29.0 36.5 90-91 33.20828003388337 35.0 33.0 35.0 29.0 36.0 92-93 33.13978272898696 35.0 33.0 35.0 29.0 36.0 94-95 33.101429466692025 34.5 33.0 35.0 29.0 36.0 96-97 33.0526965487901 34.0 33.0 35.0 29.0 35.0 98-99 33.12626849378492 34.0 33.0 35.0 29.0 35.0 100-101 32.612911286083175 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 7.0 20 41.0 21 267.0 22 1248.0 23 4167.0 24 10602.0 25 22428.0 26 41032.0 27 65633.0 28 94193.0 29 126734.0 30 162699.0 31 204515.0 32 256415.0 33 326321.0 34 431198.0 35 588758.0 36 884346.0 37 1458175.0 38 1775244.0 39 850956.0 40 33707.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.748772294343034 22.469340232294897 15.363588782683118 24.41829869067895 2 13.723430392920106 23.049029810668873 41.372419350069286 21.855120446341736 3 16.92443977391602 28.130596622911803 31.491237740146776 23.453725863025397 4 12.094885067346498 19.834550830536628 39.86029384812465 28.21027025399223 5 12.533437511795361 38.486642505221305 36.5047353825731 12.475184600410238 6 28.257622035761425 39.91786543890877 19.414135140486263 12.410377384843532 7 24.672921825683034 33.07528088463757 25.093214878025215 17.15858241165418 8 23.064446524440537 38.13063886478906 22.125668494740683 16.679246116029717 9 24.93657927185632 16.98078498761836 21.947939202764964 36.134696537760355 10-11 23.399806150662606 27.42461221616013 30.084835315953573 19.09074631722369 12-13 24.288329972833022 24.924506270806678 29.924588710599398 20.8625750457609 14-15 21.480280742241565 26.272376442168348 27.248143367296258 24.99919944829383 16-17 21.253366916079973 29.27775655842617 27.907246103493417 21.56163042200044 18-19 21.34040221032539 28.637774968904356 29.28058410759039 20.741238713179865 20-21 22.06505869569187 27.927112577500306 28.9883445315696 21.019484195238224 22-23 21.741591546900246 27.909889261035193 28.86949248911363 21.479026702950932 24-25 21.63266952994694 28.014132289219297 28.875958478255775 21.47723970257799 26-27 21.640326864743287 28.1116716504253 28.790646543982607 21.457354940848806 28-29 21.580996929894425 28.155129525301852 28.829829651946692 21.434043892857034 30-31 21.828684278387126 28.03086612994517 28.70874745680113 21.431702134866573 32-33 21.67359484138303 28.169924856188093 28.669884231066384 21.48659607136249 34-35 21.752567544566894 28.15316059118184 28.695159443070622 21.39911242118064 36-37 21.700415606309797 28.14823625170726 28.67253726130889 21.478810880674054 38-39 21.573107049608357 28.19325205018345 28.750339636731777 21.483301263476424 40-41 21.789639077507303 28.071260357140133 28.632631120696043 21.50646944465652 42-43 21.688274581738728 28.175429917148076 28.453824178592026 21.682471322521174 44-45 21.79103891393919 28.234786166978093 28.332266152807208 21.64190876627551 46-47 21.850906008143447 28.212129647549588 28.12357921744339 21.813385126863572 48-49 21.752223995716694 28.305359094863686 28.14478590325852 21.797631006161104 50-51 21.76876684715677 28.35526723941072 28.094219266510784 21.781746646921725 52-53 21.931646951860532 28.23996310568767 28.035784878097658 21.79260506435414 54-55 21.861267342142348 28.19249637977994 28.075641128089696 21.870595149988013 56-57 21.88424288970179 28.31132034970581 28.020308789145187 21.784127971447216 58-59 21.877174820015355 28.357392159618243 27.980842101747587 21.78459091861881 60-61 21.908163947159576 28.311480396789506 28.01210866662777 21.768246989423147 62-63 21.890789997588563 28.368260208255837 27.96371381054838 21.77723598360722 64-65 21.843221035953597 28.356451221683194 27.941295679426354 21.85903206293686 66-67 21.91953012485316 28.371034181007204 27.83440759189226 21.875028102247377 68-69 21.87653732439422 28.352543890624037 27.89781999398458 21.87309879099716 70-71 21.89225597843173 28.135975102851695 27.949520365055147 22.022248553661427 72-73 21.957944887565247 28.201492793456424 27.878888088015145 21.961674230963187 74-75 21.791717237683265 28.280072246178023 27.899989154557243 22.02822136158147 76-77 21.8948945063198 28.28048246690885 27.85706926699516 21.967553759776184 78-79 21.849698297816143 28.264206569174448 27.84116191608724 22.044933216922164 80-81 21.895330404488163 28.276372188952514 27.83478057437715 21.99351683218217 82-83 21.900207656857056 28.285416187201847 27.874907755734984 21.939468400206117 84-85 21.932512313117254 28.25816356038221 27.875473455318428 21.93385067118211 86-87 21.813851672489573 28.251274890009576 27.95493003011312 21.97994340738773 88-89 21.85254712730977 28.25410818239685 27.929822736210035 21.96352195408335 90-91 21.89590929909073 28.27673891213006 27.944696197483232 21.882655591295972 92-93 21.903272293882047 28.2410144277225 27.917199070282027 21.93851420811343 94-95 21.742515825375648 28.312277348296846 27.9763473875598 21.96885943876771 96-97 21.700850594884848 28.332452007756192 28.042060849944306 21.924636547414657 98-99 21.912597636641618 28.931175042776513 28.125624880716355 21.03060243986552 100-101 22.473773488598045 31.624838217511652 25.323608548598887 20.577779745291416 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1539.0 1 1386.5 2 1834.5 3 2551.0 4 3268.0 5 4973.0 6 6429.0 7 7401.5 8 7945.0 9 7749.0 10 7237.0 11 6717.0 12 7240.5 13 9331.5 14 14418.0 15 21748.0 16 27989.5 17 31627.0 18 32772.5 19 32269.5 20 31291.5 21 30881.5 22 32241.0 23 36894.5 24 45406.0 25 57950.5 26 74014.0 27 91762.5 28 111315.0 29 132394.0 30 151771.5 31 170441.5 32 189324.5 33 207262.5 34 225025.5 35 241392.5 36 257784.0 37 271705.0 38 281810.0 39 290670.0 40 299722.5 41 306941.5 42 309636.0 43 312159.0 44 314900.0 45 314798.5 46 311932.5 47 307921.0 48 301854.0 49 293301.5 50 283151.0 51 271101.0 52 256149.0 53 239465.5 54 222477.0 55 203757.5 56 184599.0 57 166087.5 58 146240.0 59 124966.5 60 103785.5 61 84275.0 62 66792.0 63 51293.5 64 38127.5 65 28197.0 66 21103.0 67 15922.5 68 11959.0 69 8410.0 70 5846.0 71 4197.0 72 2952.0 73 1985.5 74 1290.0 75 853.0 76 555.5 77 366.5 78 249.5 79 175.0 80 124.0 81 89.0 82 69.5 83 49.5 84 36.5 85 27.0 86 21.5 87 19.0 88 13.0 89 8.0 90 5.5 91 3.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003760889717495864 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.586828928164146E-4 20-21 0.0011855372630032658 22-23 0.0024939358518814704 24-25 3.407800359604725E-5 26-27 0.0077999386641186864 28-29 2.182938872868164E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03431794430547991 38-39 0.015493091060555905 40-41 0.02457754674246411 42-43 0.001290379991522979 44-45 0.005549647394614865 46-47 0.004910040933063058 48-49 0.0030502819368331637 50-51 0.0022585808104814576 52-53 2.4420517763817625E-4 54-55 0.0027855687821530624 56-57 0.014672917656491383 58-59 0.01032331257869715 60-61 0.0037147443211616882 62-63 0.0012072611069774317 64-65 0.0035414187017757145 66-67 2.307860652965402E-4 68-69 4.831639508155204E-4 70-71 2.9343610335112996E-4 72-73 0.0 74-75 0.0 76-77 0.00536654064169966 78-79 3.252335626315538E-4 80-81 0.0 82-83 1.232122236382827E-4 84-85 0.0016416922742407687 86-87 0.0051932072125867425 88-89 0.0758464538637473 90-91 0.0030799921562866418 92-93 0.0014814489824582196 94-95 0.0 96-97 0.01641059039354777 98-99 1.034999008988449E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 145.0 20-21 514.0 22-23 1171.0 24-25 2668.0 26-27 3381.0 28-29 5788.0 30-31 15892.0 32-33 20371.0 34-35 28642.0 36-37 46765.0 38-39 53525.0 40-41 54511.0 42-43 60779.0 44-45 70975.0 46-47 71970.0 48-49 67098.0 50-51 63043.0 52-53 60243.0 54-55 66033.0 56-57 69730.0 58-59 70276.0 60-61 69233.0 62-63 65852.0 64-65 68823.0 66-67 73649.0 68-69 74567.0 70-71 75086.0 72-73 71271.0 74-75 72691.0 76-77 72434.0 78-79 79356.0 80-81 81192.0 82-83 77980.0 84-85 76754.0 86-87 80612.0 88-89 86063.0 90-91 91193.0 92-93 95666.0 94-95 118031.0 96-97 156208.0 98-99 594878.0 100-101 4323630.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.63194684205877 #Duplication Level Percentage of deduplicated Percentage of total 1 92.02191306425368 81.56081307015485 2 5.814136134229122 10.306364095629771 3 1.2376968888920181 3.290984545885766 4 0.4331385530281662 1.5355965282895472 5 0.20097164405092866 0.8906254036141533 6 0.10016660438282594 0.5326776693004895 7 0.05864262753254739 0.3638327172300374 8 0.03348740834858921 0.23744433573043788 9 0.022506132930234454 0.17952861397435635 >10 0.07633476642424687 1.014816548227835 >50 7.776651521139952E-4 0.04362190181725178 >100 2.28510775562824E-4 0.0436945701454738 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 1.3626412019912549E-5 0.0 0.0 0.0 4 0.0 4.087923605973765E-5 0.0 0.0 0.0 5 0.0 6.813206009956274E-5 0.0 0.0 0.0 6 0.0 6.813206009956274E-5 0.0 0.0 1.3626412019912549E-5 7 0.0 6.813206009956274E-5 0.0 0.0 1.3626412019912549E-5 8 0.0 6.813206009956274E-5 0.0 0.0 2.7252824039825097E-5 9 0.0 1.2263770817921293E-4 0.0 2.7252824039825097E-5 2.7252824039825097E-5 10-11 0.0 1.2263770817921293E-4 0.0 2.7252824039825097E-5 2.7252824039825097E-5 12-13 0.0 1.2263770817921293E-4 0.0 2.7252824039825097E-5 2.7252824039825097E-5 14-15 1.3626412019912549E-5 1.9076976827877567E-4 0.0 2.7252824039825097E-5 2.7252824039825097E-5 16-17 1.3626412019912549E-5 2.0439618029868822E-4 0.0 2.7252824039825097E-5 2.7252824039825097E-5 18-19 1.3626412019912549E-5 2.3164900433851333E-4 0.0 5.4505648079650194E-5 2.7252824039825097E-5 20-21 2.7252824039825097E-5 2.4527541635842586E-4 0.0 1.0219809014934411E-4 2.7252824039825097E-5 22-23 2.7252824039825097E-5 2.7252824039825096E-4 0.0 1.0901129615930039E-4 3.406603004978137E-5 24-25 3.406603004978137E-5 3.134074764579886E-4 0.0 1.4307732620908175E-4 4.087923605973765E-5 26-27 4.087923605973765E-5 3.406603004978137E-4 0.0 2.1802259231860078E-4 4.087923605973765E-5 28-29 4.087923605973765E-5 3.4747350650776997E-4 0.0 7.97145103164884E-4 5.4505648079650194E-5 30-31 4.087923605973765E-5 4.22418772617289E-4 0.0 0.0028206672881218977 6.813206009956274E-5 32-33 4.087923605973765E-5 4.3604518463720155E-4 0.0 0.008087275533818097 8.17584721194753E-5 34-35 4.087923605973765E-5 5.109904507467206E-4 0.0 0.014491689183176995 9.538488413938784E-5 36-37 4.087923605973765E-5 5.927489228661959E-4 0.0 0.02326028531799072 9.538488413938784E-5 38-39 4.087923605973765E-5 6.336281589259334E-4 0.0 0.03585790323039987 9.538488413938784E-5 40-41 4.087923605973765E-5 8.107715151847966E-4 0.0 0.04757661756752467 9.538488413938784E-5 42-43 4.087923605973765E-5 8.243979272047092E-4 0.0 0.057680602080289814 9.538488413938784E-5 44-45 4.087923605973765E-5 9.129696053341407E-4 0.0 0.06852041284213026 9.538488413938784E-5 46-47 6.813206009956274E-5 9.606620474038347E-4 0.0 0.07932615757392089 9.538488413938784E-5 48-49 6.813206009956274E-5 0.0010015412834635724 0.0 0.08882376675179995 9.538488413938784E-5 50-51 6.813206009956274E-5 0.0011105525796228726 0.0 0.09821236463351969 9.538488413938784E-5 52-53 7.494526610951902E-5 0.0011309921976527415 0.0 0.10629282696132783 1.1582450216925667E-4 54-55 8.17584721194753E-5 0.0011786846397224353 0.0 0.1144618609672654 1.3626412019912548E-4 56-57 8.17584721194753E-5 0.0011854978457323917 0.0 0.12272627985734237 1.3626412019912548E-4 58-59 8.17584721194753E-5 0.0011854978457323917 0.0 0.1304933347086925 1.3626412019912548E-4 60-61 8.857167812943156E-5 0.001199124257752304 0.0 0.13804236696772407 1.3626412019912548E-4 62-63 9.538488413938784E-5 0.0012263770817921293 0.0 0.14491689183176995 1.4989053221903804E-4 64-65 9.538488413938784E-5 0.0013353883779514298 0.0 0.15183229593187558 1.4989053221903804E-4 66-67 9.538488413938784E-5 0.0013558279959812985 0.0 0.15853649064567255 1.5670373822899433E-4 68-69 1.0901129615930039E-4 0.0013762676140111675 0.0 0.1658675003123855 1.635169442389506E-4 70-71 1.0901129615930039E-4 0.0013762676140111675 0.0 0.17306224585889932 1.635169442389506E-4 72-73 1.0901129615930039E-4 0.0013762676140111675 0.0 0.17931676897603918 2.1802259231860078E-4 74-75 1.0901129615930039E-4 0.0014035204380509923 0.0 0.18533282988283056 2.1802259231860078E-4 76-77 1.0901129615930039E-4 0.001417146850070905 0.0 0.1898636118794515 2.1802259231860078E-4 78-79 1.0901129615930039E-4 0.001417146850070905 0.0 0.19444889952415206 2.1802259231860078E-4 80-81 1.0901129615930039E-4 0.0014307732620908176 0.0 0.1968471480396567 2.1802259231860078E-4 82-83 1.0901129615930039E-4 0.0014580260861306428 0.0 0.19850275710007603 2.1802259231860078E-4 84-85 1.0901129615930039E-4 0.0014716524981505553 0.0 0.19994715677418679 2.2483579832855707E-4 86-87 1.0901129615930039E-4 0.0014716524981505553 0.0 0.20021968501458504 2.3164900433851333E-4 88-89 1.0901129615930039E-4 0.0014989053221903803 0.0 0.20028100386867465 2.3164900433851333E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7075 0.0 44.423973 1 GTATCAA 12420 0.0 33.876743 1 TCAACGC 14335 0.0 28.205908 4 ATCAACG 14590 0.0 27.770607 3 CAACGCA 14835 0.0 27.340338 5 AACGCAG 15275 0.0 26.71806 6 TATCAAC 16110 0.0 25.647156 2 ACGCAGA 17715 0.0 23.014261 7 CGCAGAG 17745 0.0 22.92793 8 TACATGG 17230 0.0 19.486816 2 GTACATG 17370 0.0 19.47509 1 ACATGGG 17545 0.0 18.465103 3 GCAGAGT 21815 0.0 18.41885 9 AGAGTAC 19505 0.0 17.763643 10-11 GAGTACT 12810 0.0 16.964285 12-13 CAGAGTA 21545 0.0 16.482016 10-11 CATGGGG 12810 0.0 15.896833 4 AGTACTT 14675 0.0 15.295748 12-13 GTACTTT 14755 0.0 14.600636 14-15 GTATTAG 2570 0.0 14.243259 1 >>END_MODULE