##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139809_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15296749 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.01254658751346 33.0 31.0 34.0 30.0 34.0 2 32.172553396803465 33.0 31.0 34.0 30.0 34.0 3 32.223816380853215 34.0 31.0 34.0 30.0 34.0 4 35.875042533547486 37.0 35.0 37.0 35.0 37.0 5 35.748582394860506 37.0 35.0 37.0 35.0 37.0 6 35.762752987579255 37.0 35.0 37.0 33.0 37.0 7 35.681932350462176 37.0 35.0 37.0 33.0 37.0 8 35.66345378354577 37.0 35.0 37.0 33.0 37.0 9 37.29318706870329 39.0 37.0 39.0 34.0 39.0 10-11 37.201601104914516 39.0 37.0 39.0 33.0 39.0 12-13 37.176093168554964 39.0 37.0 39.0 33.0 39.0 14-15 38.38320162016125 40.0 38.0 41.0 33.0 41.0 16-17 38.36463519143839 40.0 38.0 41.0 33.0 41.0 18-19 38.402613359217696 40.0 38.0 41.0 33.5 41.0 20-21 38.376068033054054 40.0 38.0 41.0 34.0 41.0 22-23 38.307767893132585 40.0 38.0 41.0 33.5 41.0 24-25 38.22002781223556 40.0 38.0 41.0 33.0 41.0 26-27 38.066786904620415 40.0 37.0 41.0 33.0 41.0 28-29 37.96631294613343 40.0 37.0 41.0 33.0 41.0 30-31 37.85359370752431 40.0 37.0 41.0 33.0 41.0 32-33 38.015594798289115 40.0 37.0 41.0 33.0 41.0 34-35 38.002598505567605 40.0 37.0 41.0 33.0 41.0 36-37 37.91998488950016 40.0 37.0 41.0 33.0 41.0 38-39 37.79388778041878 40.0 37.0 41.0 33.0 41.0 40-41 37.74325943397544 40.0 37.0 41.0 33.0 41.0 42-43 37.665730605284125 40.0 37.0 41.0 32.5 41.0 44-45 37.66499975988422 40.0 37.0 41.0 32.5 41.0 46-47 37.70508054719203 40.0 37.0 41.0 32.5 41.0 48-49 37.630899473726046 40.0 37.0 41.0 32.0 41.0 50-51 37.5637708321609 40.0 36.5 41.0 32.0 41.0 52-53 37.4249923657602 39.5 36.0 41.0 31.5 41.0 54-55 37.302454897946056 39.0 36.0 41.0 31.0 41.0 56-57 37.133388817698275 39.0 35.5 41.0 31.0 41.0 58-59 36.971855791669626 39.0 35.0 40.0 31.0 41.0 60-61 36.815873068747564 39.0 35.0 40.0 31.0 41.0 62-63 36.59088416191062 38.0 35.0 40.0 31.0 41.0 64-65 36.37287862796211 38.0 35.0 40.0 30.5 41.0 66-67 36.11917719828084 37.5 34.5 40.0 30.0 41.0 68-69 35.830654231422955 37.0 34.0 39.5 30.0 41.0 70-71 35.54697457169986 36.5 34.0 39.0 30.0 41.0 72-73 35.23195770631355 36.0 34.0 39.0 29.0 40.0 74-75 34.89608868329083 35.5 34.0 38.5 29.0 40.0 76-77 33.81160288887578 35.0 32.5 37.0 28.0 39.0 78-79 34.17508194805094 35.0 33.0 37.0 29.0 39.0 80-81 34.07087298964254 35.0 33.0 36.5 29.0 39.0 82-83 33.82682037750215 35.0 33.0 36.0 29.0 37.5 84-85 33.61818544607421 35.0 33.0 36.0 29.0 37.0 86-87 33.43965855080188 35.0 33.0 35.0 29.0 37.0 88-89 33.234994725041986 35.0 33.0 35.0 29.0 36.5 90-91 33.11941526182842 35.0 33.0 35.0 29.0 36.0 92-93 33.06076265807128 34.5 33.0 35.0 29.0 36.0 94-95 33.03050665260206 34.0 33.0 35.0 29.0 35.5 96-97 32.98885872686971 34.0 33.0 35.0 29.0 35.0 98-99 33.07652611585239 34.0 33.0 35.0 29.0 35.0 100-101 32.55726983339191 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 2.0 17 1.0 18 3.0 19 27.0 20 122.0 21 685.0 22 3317.0 23 10860.0 24 27824.0 25 58004.0 26 100995.0 27 156206.0 28 218725.0 29 284966.0 30 357467.0 31 438052.0 32 541549.0 33 682423.0 34 900105.0 35 1230278.0 36 1869469.0 37 3086400.0 38 3587276.0 39 1678680.0 40 63311.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.940800362220756 22.270222254414975 15.385857478605422 24.403119904758846 2 13.921988969881838 23.077566276779095 40.66183062514093 22.338614128198138 3 16.79744499958782 27.922469016128854 31.768756877686886 23.511329106596442 4 12.205122800929793 19.825212533722034 39.4381512045468 28.531513460801378 5 12.610078128365707 38.4307018439016 36.31055200029758 12.64866802743511 6 28.426353861202795 39.645410930126395 19.25465339073028 12.673581817940532 7 24.79303935757853 33.225177454372826 24.777539332050228 17.20424385599842 8 23.633982619444172 37.29232923936976 22.001609623064354 17.072078518121728 9 25.209245441629456 16.511573799112476 21.78885199724464 36.49032876201342 10-11 23.504494320982843 27.14062968543185 29.947804595603944 19.407071397981362 12-13 24.415393754581448 24.86073348003553 29.761582019813492 20.962290745569533 14-15 21.668931091174993 26.162670251044844 27.193833800894556 24.974564856885603 16-17 21.272895959788578 29.104785598560845 27.886157378930648 21.736161062719926 18-19 21.32016475615782 28.427464898969983 29.400425249514328 20.85194509535787 20-21 22.103175569559657 27.685998567918528 29.13823247281505 21.07259338970676 22-23 21.855192164184352 27.585790460415826 28.999026348865787 21.559991026534036 24-25 21.668913535136312 27.779276344089993 28.997683240824614 21.554126879949077 26-27 21.643227881291295 27.909194651075076 28.90421474139243 21.543362726241195 28-29 21.623888853631158 27.93186207231529 28.927302980123613 21.51694609392994 30-31 21.8366859246744 27.799027121812564 28.83022858121505 21.53405837229799 32-33 21.69657751069841 27.95465037643009 28.753886466853483 21.594885646018014 34-35 21.80572553570038 27.978558203959953 28.774460903863364 21.441255356476304 36-37 21.74853214751239 27.971897894436857 28.721042764422428 21.558527193628326 38-39 21.637064008592503 28.045910806367104 28.7765227125724 21.540502472467995 40-41 21.82975665059853 27.85949587993996 28.685078491507472 21.62566897795404 42-43 21.705345065400657 28.047630763935455 28.441963517269958 21.805060653393927 44-45 21.84647695711169 28.063630192372855 28.29646741174075 21.793425438774705 46-47 21.894952743513592 28.06083136943265 28.08319370573436 21.961022181319404 48-49 21.8067453922381 28.197839323638085 28.0291686585954 21.96624662552842 50-51 21.859849707330046 28.251574119935498 27.934948130238574 21.953628042495886 52-53 21.978903266214925 28.147190219675217 27.827820421824857 22.046086092285 54-55 21.936377056193106 28.07447393728802 27.880656341193227 22.108492665325645 56-57 21.949609388795526 28.127225905429835 27.884900605715146 22.038264100059486 58-59 21.925268387749313 28.156377694169286 27.869492248183093 22.04886166989831 60-61 21.998067089352844 28.107546338236812 27.898500712590625 21.995885859819722 62-63 21.981012299302225 28.201511865991698 27.831365984968 21.98610984973808 64-65 21.946196407047893 28.18400278142136 27.78619255221245 22.083608259318297 66-67 21.994644074936044 28.228297206399393 27.657364883642256 22.119693835022304 68-69 21.971858064167748 28.174754280596336 27.692431708921 22.160955946314914 70-71 21.966204370931735 27.99232296045248 27.798205103125852 22.243267565489933 72-73 21.99544524453013 28.03334813506883 27.67947077776252 22.291735842638513 74-75 21.93218311435453 28.077784318919846 27.70570708246744 22.28432548425818 76-77 22.092301275535554 28.000491500645136 27.639176517757093 22.268030706062216 78-79 22.038509777918513 28.00450760679316 27.62198111468188 22.335001500606445 80-81 22.080570174918112 28.01347089653914 27.60164677651075 22.304312152031997 82-83 22.083281568830337 27.97918896794912 27.679110853186796 22.258418610033747 84-85 22.15699831038434 27.98105386270308 27.65794238043757 22.204005446475 86-87 22.06813079918651 27.985571384179636 27.713449371627735 22.232848445006123 88-89 22.10059608444105 27.91363499299044 27.715562083921323 22.270206838647187 90-91 22.145066655901054 27.879230649155108 27.79183548092665 22.183867214017187 92-93 22.19977280511637 27.80598798077377 27.815586985354233 22.17865222875562 94-95 22.016486428526438 27.83889359046709 27.88101728510883 22.263602695897642 96-97 21.964751106205632 27.884565969820375 27.92958771995815 22.221095204015846 98-99 22.15888332376824 28.47485482131433 28.030336210354605 21.335925644562824 100-101 22.728142857021457 31.108231908968616 25.238185207541914 20.92544002646801 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3370.0 1 3035.5 2 4256.0 3 6118.0 4 8123.5 5 12617.0 6 16344.0 7 19009.5 8 20620.0 9 20235.5 10 18785.5 11 17486.0 12 19441.0 13 25908.0 14 40623.5 15 60598.5 16 76373.0 17 84256.0 18 85767.0 19 83586.5 20 79717.0 21 77161.5 22 78999.0 23 88328.5 24 105615.5 25 131467.5 26 163637.5 27 196649.5 28 231168.5 29 266857.0 30 300735.5 31 335601.5 32 372174.0 33 406872.0 34 439676.5 35 471649.5 36 505382.5 37 536751.0 38 561687.5 39 580687.5 40 598660.5 41 615477.0 42 624517.5 43 629851.5 44 636246.5 45 643678.0 46 646506.0 47 642850.0 48 634975.0 49 620759.5 50 602331.0 51 579660.5 52 550833.0 53 517950.5 54 483119.0 55 446076.5 56 408356.0 57 367751.0 58 324128.0 59 279272.0 60 233101.5 61 189341.0 62 149635.0 63 115515.0 64 86028.0 65 63523.5 66 47594.5 67 35871.0 68 27033.5 69 19498.5 70 13956.0 71 10071.5 72 6988.0 73 4710.0 74 3166.0 75 2130.0 76 1426.0 77 942.0 78 633.5 79 416.0 80 300.0 81 209.5 82 142.5 83 94.0 84 57.5 85 37.0 86 28.5 87 23.0 88 16.5 89 13.0 90 9.0 91 6.0 92 5.5 93 4.0 94 2.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004118522177490132 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.393302851475172E-4 20-21 0.0011604268932691646 22-23 0.002595725382977377 24-25 2.6159957874619834E-5 26-27 0.007880628982146597 28-29 1.734699281369729E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.034664505110678576 38-39 0.015141669390242606 40-41 0.024572058503018284 42-43 0.0012171452986016798 44-45 0.00541508306008329 46-47 0.004506183230962449 48-49 0.002571293035049348 50-51 0.002409678739651808 52-53 1.7827912720814744E-4 54-55 0.002557977127223313 56-57 0.01470579901096236 58-59 0.010005392855364044 60-61 0.0035350990825583255 62-63 0.0010419884227589912 64-65 0.003159228766346168 66-67 2.5291932126570945E-4 68-69 4.84903800322977E-4 70-71 2.1997199599368145E-4 72-73 3.9775353576044925E-6 74-75 0.0 76-77 0.006302462133318572 78-79 3.141755685833691E-4 80-81 0.0 82-83 1.233837316167281E-4 84-85 0.0018773154906364033 86-87 0.005360514528811868 88-89 0.07864095263981549 90-91 0.002959852318756905 92-93 0.0013831227398333678 94-95 0.0 96-97 0.017132352075576493 98-99 3.02400378605274E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 408.0 20-21 1381.0 22-23 2878.0 24-25 5951.0 26-27 7465.0 28-29 13108.0 30-31 36761.0 32-33 47751.0 34-35 67342.0 36-37 103104.0 38-39 111654.0 40-41 119788.0 42-43 133816.0 44-45 157675.0 46-47 158397.0 48-49 144416.0 50-51 131771.0 52-53 122988.0 54-55 132278.0 56-57 139588.0 58-59 143186.0 60-61 141238.0 62-63 138432.0 64-65 148041.0 66-67 158497.0 68-69 159730.0 70-71 160091.0 72-73 154398.0 74-75 158365.0 76-77 159028.0 78-79 170131.0 80-81 173067.0 82-83 167040.0 84-85 166695.0 86-87 176866.0 88-89 186454.0 90-91 201108.0 92-93 208327.0 94-95 256239.0 96-97 327687.0 98-99 1234742.0 100-101 8868867.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.12903384656383 #Duplication Level Percentage of deduplicated Percentage of total 1 89.34494491549498 75.16503894815058 2 7.241284665797389 12.184045654829442 3 1.863839951488661 4.704091630901023 4 0.6971256586607093 2.3459403253109965 5 0.3397497952484805 1.429141101191127 6 0.17016584118578829 0.8589532687588913 7 0.0986137365047474 0.5807394863300814 8 0.06601056264058909 0.44427238868966734 9 0.03879159256119441 0.2937149283188555 >10 0.13593884457703898 1.7469491936295705 >50 0.00289327076357475 0.1579834080306665 >100 6.274826811727588E-4 0.08153249344028786 >500 1.368239569008705E-5 0.007597172418748523 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3074673579333753E-5 0.0 6.537336789666876E-6 0.0 3 0.0 1.3074673579333753E-5 0.0 1.3074673579333753E-5 0.0 4 0.0 1.961201036900063E-5 0.0 1.961201036900063E-5 0.0 5 6.537336789666876E-6 1.961201036900063E-5 0.0 1.961201036900063E-5 6.537336789666876E-6 6 6.537336789666876E-6 1.961201036900063E-5 0.0 1.961201036900063E-5 6.537336789666876E-6 7 6.537336789666876E-6 1.961201036900063E-5 0.0 1.961201036900063E-5 6.537336789666876E-6 8 6.537336789666876E-6 2.6149347158667505E-5 0.0 1.961201036900063E-5 6.537336789666876E-6 9 6.537336789666876E-6 6.537336789666876E-5 0.0 3.268668394833438E-5 6.537336789666876E-6 10-11 6.537336789666876E-6 6.537336789666876E-5 0.0 5.229869431733501E-5 1.961201036900063E-5 12-13 6.537336789666876E-6 6.537336789666876E-5 0.0 5.8836031107001886E-5 1.961201036900063E-5 14-15 9.806005184500314E-6 1.1440339381917034E-4 0.0 5.8836031107001886E-5 3.268668394833438E-5 16-17 1.961201036900063E-5 1.1767206221400377E-4 0.0 8.171670987083596E-5 3.922402073800126E-5 18-19 1.961201036900063E-5 1.2747806739850408E-4 0.0 1.3074673579333753E-4 5.8836031107001886E-5 20-21 1.961201036900063E-5 1.372840725830044E-4 0.0 1.9285143529517286E-4 7.517937308116907E-5 22-23 1.961201036900063E-5 1.438214093726713E-4 0.0 3.693595286161785E-4 8.49853782656694E-5 24-25 1.961201036900063E-5 1.634334197416719E-4 0.0 9.904065236345317E-4 9.479138345016971E-5 26-27 2.2880678763834067E-5 1.7650809332100565E-4 0.0 0.0032588623896489376 9.806005184500315E-5 28-29 2.6149347158667505E-5 1.797767617158391E-4 0.0 0.017261837793115388 9.806005184500315E-5 30-31 2.6149347158667505E-5 1.8958276690033942E-4 0.0 0.02634219859396268 9.806005184500315E-5 32-33 2.6149347158667505E-5 1.8958276690033942E-4 0.0 0.034180465404773264 9.806005184500315E-5 34-35 3.268668394833438E-5 2.0919477726934004E-4 0.0 0.04407472463593408 1.111347254243369E-4 36-37 3.268668394833438E-5 2.2880678763834066E-4 0.0 0.057685459832020516 1.111347254243369E-4 38-39 3.268668394833438E-5 2.3534412442800755E-4 0.0 0.08138657436295778 1.1440339381917034E-4 40-41 3.268668394833438E-5 2.5495613479700817E-4 0.0 0.12576528515961138 1.1767206221400377E-4 42-43 3.268668394833438E-5 2.6149347158667505E-4 0.0 0.1456420576685935 1.1767206221400377E-4 44-45 3.268668394833438E-5 2.9418015553500947E-4 0.0 0.1735597544288659 1.2420939900367064E-4 46-47 3.268668394833438E-5 3.2032950269367694E-4 0.0 0.20471670156841823 1.3074673579333753E-4 48-49 3.268668394833438E-5 3.2032950269367694E-4 0.0 0.22998677692887554 1.4709007776750473E-4 50-51 3.268668394833438E-5 3.497475182471779E-4 0.0 0.2528282316719716 1.536274145571716E-4 52-53 3.268668394833438E-5 3.595535234316782E-4 0.0 0.2827496221582769 1.699707565313388E-4 54-55 3.268668394833438E-5 3.595535234316782E-4 0.0 0.34329516683577666 1.8304543011067254E-4 56-57 3.268668394833438E-5 3.6609086022134507E-4 0.0 0.4066844530167816 1.8304543011067254E-4 58-59 3.922402073800126E-5 3.6609086022134507E-4 0.0 0.45885566926671806 1.8631409850550598E-4 60-61 3.922402073800126E-5 3.693595286161785E-4 0.0 0.4949940670399965 1.8958276690033942E-4 62-63 3.922402073800126E-5 3.857028705903457E-4 0.0 0.525167144992704 2.0265744047967316E-4 64-65 3.922402073800126E-5 4.641509120663482E-4 0.0 0.5393368224843069 2.059261088745066E-4 66-67 3.922402073800126E-5 4.77225585645682E-4 0.0 0.5470901039168519 2.1573211405900692E-4 68-69 3.922402073800126E-5 4.903002592250157E-4 0.0 0.5550950728157991 2.222694508486738E-4 70-71 3.922402073800126E-5 4.903002592250157E-4 0.0 0.5622469192636945 2.2553811924350722E-4 72-73 3.922402073800126E-5 4.935689276198492E-4 0.0 0.5680912983536568 2.5495613479700817E-4 74-75 3.922402073800126E-5 5.099122695940163E-4 0.0 0.5733538544693385 2.6476213998150846E-4 76-77 3.922402073800126E-5 5.458676219371842E-4 0.0 0.5783516484450388 2.6803080837634193E-4 78-79 3.922402073800126E-5 5.622109639113514E-4 0.0 0.5825714993427689 2.6803080837634193E-4 80-81 3.922402073800126E-5 5.622109639113514E-4 0.0 0.5849870452865508 2.90911487140176E-4 82-83 3.922402073800126E-5 5.622109639113514E-4 0.0 0.5865625434528605 3.301355078781773E-4 84-85 3.922402073800126E-5 5.687483007010182E-4 0.0 0.5880203695569561 3.334041762730107E-4 86-87 3.922402073800126E-5 5.81822974280352E-4 0.0 0.5882459076761997 3.334041762730107E-4 88-89 3.922402073800126E-5 6.014349846493526E-4 0.0 0.5882687883549635 3.43210181457511E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16865 0.0 46.472687 1 GTATCAA 29360 0.0 33.864944 1 TCAACGC 36440 0.0 26.570463 4 ATCAACG 36855 0.0 26.271269 3 CAACGCA 37385 0.0 25.876394 5 AACGCAG 38625 0.0 25.110807 6 TATCAAC 39210 0.0 24.91919 2 ACGCAGA 45245 0.0 21.566483 7 CGCAGAG 45535 0.0 21.410715 8 GTACATG 39285 0.0 19.779873 1 TACATGG 39990 0.0 19.106089 2 AGAGTAC 47980 0.0 18.353233 10-11 ACATGGG 40500 0.0 18.170866 3 GCAGAGT 54050 0.0 17.905796 9 GAGTACT 31565 0.0 17.117317 12-13 CATGGGG 29965 0.0 16.666754 4 CAGAGTA 52545 0.0 16.419579 10-11 AGTACTT 35430 0.0 15.918723 12-13 GTGGTAT 8520 0.0 15.553291 1 GTACTTT 36740 0.0 14.689983 14-15 >>END_MODULE