##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139808_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21379313 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03750929695449 33.0 31.0 34.0 30.0 34.0 2 32.200130097725776 33.0 31.0 34.0 30.0 34.0 3 32.25201703160434 34.0 31.0 34.0 30.0 34.0 4 35.89386600027793 37.0 35.0 37.0 35.0 37.0 5 35.77115373164704 37.0 35.0 37.0 35.0 37.0 6 35.782235191561114 37.0 35.0 37.0 33.0 37.0 7 35.70313695299751 37.0 35.0 37.0 33.0 37.0 8 35.683573134459465 37.0 35.0 37.0 33.0 37.0 9 37.316338041358016 39.0 37.0 39.0 34.0 39.0 10-11 37.22999511256512 39.0 37.0 39.0 33.0 39.0 12-13 37.20766282340317 39.0 37.0 39.0 33.0 39.0 14-15 38.42707111308955 40.0 38.0 41.0 33.0 41.0 16-17 38.411275469889986 40.0 38.0 41.0 33.0 41.0 18-19 38.448276705617246 40.0 38.0 41.0 33.5 41.0 20-21 38.42224667401422 40.0 38.0 41.0 34.0 41.0 22-23 38.35593845398574 40.0 38.0 41.0 34.0 41.0 24-25 38.27301346010785 40.0 38.0 41.0 33.0 41.0 26-27 38.12696351209716 40.0 38.0 41.0 33.0 41.0 28-29 38.030495565771204 40.0 37.0 41.0 33.0 41.0 30-31 37.921980965991914 40.0 37.0 41.0 33.0 41.0 32-33 38.08185823436462 40.0 37.0 41.0 33.0 41.0 34-35 38.06997390482199 40.0 37.0 41.0 33.0 41.0 36-37 37.98971439331163 40.0 37.0 41.0 33.0 41.0 38-39 37.86687073702806 40.0 37.0 41.0 33.0 41.0 40-41 37.82065319005639 40.0 37.0 41.0 33.0 41.0 42-43 37.74579353501324 40.0 37.0 41.0 33.0 41.0 44-45 37.749400076426504 40.0 37.0 41.0 33.0 41.0 46-47 37.79163753498402 40.0 37.0 41.0 33.0 41.0 48-49 37.72410044435527 40.0 37.0 41.0 32.0 41.0 50-51 37.665816148432626 40.0 37.0 41.0 32.0 41.0 52-53 37.535117725716 40.0 36.5 41.0 32.0 41.0 54-55 37.42190631093948 39.0 36.0 41.0 31.5 41.0 56-57 37.26361402154663 39.0 36.0 41.0 31.0 41.0 58-59 37.11265850480024 39.0 35.5 41.0 31.0 41.0 60-61 36.968414899791284 39.0 35.0 40.0 31.0 41.0 62-63 36.75509657236307 38.5 35.0 40.0 31.0 41.0 64-65 36.55031228550272 38.0 35.0 40.0 31.0 41.0 66-67 36.30630360273457 38.0 35.0 40.0 30.5 41.0 68-69 36.02334930329206 37.0 34.0 40.0 30.0 41.0 70-71 35.74363632607346 37.0 34.0 39.0 30.0 41.0 72-73 35.42831854287975 36.0 34.0 39.0 30.0 40.5 74-75 35.088028817793386 36.0 34.0 39.0 29.0 40.0 76-77 33.98858378556017 35.0 32.5 37.0 28.5 39.0 78-79 34.33838672079774 35.0 33.0 37.0 29.0 39.0 80-81 34.21955945597719 35.0 33.0 37.0 29.0 39.0 82-83 33.959909185583136 35.0 33.0 36.0 29.0 38.5 84-85 33.73552192277842 35.0 33.0 36.0 29.0 37.0 86-87 33.54387240222816 35.0 33.0 35.5 29.0 37.0 88-89 33.3278487422583 35.0 33.0 35.0 29.0 36.5 90-91 33.201372760577584 35.0 33.0 35.0 29.0 36.0 92-93 33.13196237792283 35.0 33.0 35.0 29.0 36.0 94-95 33.09597185774562 34.5 33.0 35.0 29.0 36.0 96-97 33.05028794480536 34.0 33.0 35.0 29.0 35.0 98-99 33.13155102584136 34.0 33.0 35.0 29.0 35.0 100-101 32.61382355925493 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 2.0 18 5.0 19 20.0 20 138.0 21 829.0 22 4180.0 23 14028.0 24 36428.0 25 76209.0 26 134549.0 27 209400.0 28 293981.0 29 386124.0 30 484964.0 31 599356.0 32 738075.0 33 930661.0 34 1222325.0 35 1666549.0 36 2518909.0 37 4200456.0 38 5236076.0 39 2521477.0 40 104571.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.55759598075017 22.546374619240574 15.560602906183188 24.335426493826066 2 13.592759853351472 23.170474096780207 41.2128150285086 22.02395102135972 3 16.52293504473226 28.17086311426377 31.978960221967846 23.327241619036123 4 11.88297771775922 20.060686702140522 40.09918840703628 27.95714717306398 5 12.361173626112308 38.60680181818751 36.660583995379085 12.37144056032109 6 27.9360052402058 40.219061295374644 19.506665158043198 12.338268306376357 7 24.456978575504273 33.40277585159075 25.16766090659695 16.972584666308034 8 23.205231150318067 37.76551192267029 22.25094884947893 16.778308077532706 9 24.97902528486299 16.735771631202557 22.13505176709841 36.15015131683605 10-11 23.099194066712993 27.452446671228397 30.334791393904943 19.11356786815367 12-13 24.100781442322305 25.095450915564964 30.075084732610446 20.728682909502282 14-15 21.32507952898206 26.444671070581173 27.528889726250792 24.701359674185976 16-17 20.96100796129417 29.38194739933879 28.24468681477277 21.41235782459427 18-19 20.996476411899668 28.778752564729793 29.674083010069392 20.55068801330115 20-21 21.745459304757965 28.056596282273027 29.42906763443025 20.768876778538758 22-23 21.4683385789357 27.996922952122745 29.269981689006148 21.264756779935407 24-25 21.333221565036283 28.16432410235755 29.258110087623784 21.244344244982383 26-27 21.347030264151282 28.254606806456835 29.179649816798786 21.2187131125931 28-29 21.302449758436165 28.282496525355484 29.207345065321068 21.207708650887284 30-31 21.541312223809314 28.158066753578016 29.140772752083148 21.159848270529523 32-33 21.342945985814836 28.29685800913053 29.06010042292303 21.300095582131608 34-35 21.467349465465933 28.32819917187821 29.07364645757712 21.130804905078737 36-37 21.439648574942012 28.308845097653613 29.030401395085452 21.221104932318926 38-39 21.3214025277504 28.386051966893678 29.074906743323336 21.217638762032585 40-41 21.50648567269896 28.245285627091228 28.978396818913314 21.2698318812965 42-43 21.423256325626173 28.374588880176567 28.749081598769134 21.453073195428132 44-45 21.494571762669214 28.41378521055955 28.636704973469772 21.45493805330146 46-47 21.56025554333774 28.373803810355035 28.418253129415273 21.64768751689195 48-49 21.499279057478503 28.492380355609097 28.416291053380334 21.592049533532066 50-51 21.5483920846904 28.550668905964837 28.28356233758352 21.617376671761246 52-53 21.61341260127115 28.494822412399497 28.199199775987875 21.69256521034147 54-55 21.592842874033842 28.409651191767633 28.271807620753197 21.725698313445328 56-57 21.6295449503098 28.451259827049768 28.217732714487347 21.70146250815308 58-59 21.60833833550107 28.46421464086316 28.251666253279485 21.67578077035629 60-61 21.67648340062504 28.461966286808664 28.221609610236364 21.639940702329927 62-63 21.619727756684874 28.544284000528908 28.18925296092812 21.646735281858103 64-65 21.56714941047808 28.491255333577115 28.158293507307654 21.78330174863715 66-67 21.64642123979965 28.558903839028993 28.043829322859633 21.750845598311724 68-69 21.61123474851755 28.52519605851991 28.06068131619827 21.80288787676427 70-71 21.606404649688123 28.357689185016184 28.13027417971235 21.905631985583344 72-73 21.62466946790621 28.371904145008653 28.061548802007273 21.94187758507787 74-75 21.609195953633762 28.41515114372542 28.040412841117394 21.935240061523423 76-77 21.71362948358891 28.36755486613818 27.98268872738032 21.936126922892587 78-79 21.707617959160732 28.32704319294786 27.983028330807908 21.982310517083498 80-81 21.718923113774274 28.342980917854497 27.95154719424969 21.986548774121534 82-83 21.75784749854848 28.31827549044374 28.034889439990877 21.888987571016905 84-85 21.79846238858309 28.295913517617656 28.03238522392812 21.873238869871138 86-87 21.695848413848264 28.334893017621678 28.06910363146793 21.900154937062137 88-89 21.738425163517793 28.323757824822376 28.06002436895372 21.877792642706115 90-91 21.79361428063267 28.27353373749656 28.115433027922514 21.817418953948255 92-93 21.843435632249744 28.17667688210322 28.116209308241984 21.863678177405056 94-95 21.675203817522927 28.203940726782083 28.224792904333118 21.89606255136187 96-97 21.605876352657955 28.277468319263143 28.258578790453758 21.858076537625145 98-99 21.79674704695668 28.78860996587561 28.410888215957268 21.00375477121044 100-101 22.31350427014202 31.50216235502295 25.63817215074981 20.546161224085218 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4073.0 1 3741.5 2 5341.5 3 7664.0 4 10297.5 5 16080.0 6 20747.0 7 24182.5 8 26157.0 9 25449.0 10 23751.5 11 22412.0 12 25254.0 13 33922.5 14 53306.0 15 80088.5 16 101354.0 17 112051.0 18 114356.0 19 111979.5 20 108208.5 21 106613.5 22 111286.0 23 126705.5 24 153455.5 25 191235.5 26 239532.5 27 290550.0 28 341930.0 29 395902.0 30 449297.0 31 501060.5 32 552974.0 33 604989.0 34 653779.5 35 700560.0 36 750740.5 37 794751.5 38 825691.5 39 850840.0 40 875826.5 41 897156.0 42 909365.5 43 917096.0 44 920993.0 45 920265.0 46 912587.0 47 898432.5 48 879065.0 49 849730.5 50 815750.5 51 774486.0 52 723322.5 53 669425.5 54 614427.0 55 559359.0 56 505341.0 57 450319.0 58 393702.5 59 334835.0 60 274727.0 61 219110.0 62 171193.0 63 131180.0 64 97348.5 65 72117.5 66 54290.5 67 41055.0 68 31116.5 69 22651.0 70 16188.5 71 11584.0 72 8111.0 73 5512.0 74 3730.0 75 2518.5 76 1681.0 77 1105.5 78 755.5 79 506.5 80 352.0 81 256.0 82 185.0 83 130.0 84 92.0 85 66.0 86 47.0 87 36.0 88 32.5 89 27.0 90 19.0 91 12.5 92 8.5 93 6.0 94 3.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003980483376617387 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.215321932935824E-4 20-21 0.0012208535824685426 22-23 0.0026828832260690732 24-25 1.1697769045939081E-5 26-27 0.0077911554681425405 28-29 2.2244044280071622E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03530063473876156 38-39 0.015885721255030648 40-41 0.024844564153953485 42-43 0.0013508922207346268 44-45 0.005570545807453303 46-47 0.004671380019974347 48-49 0.002731476956736548 50-51 0.0023042179654208655 52-53 2.514871655430271E-4 54-55 0.0027104777565462716 56-57 0.014599131659370247 58-59 0.010052941663066755 60-61 0.0036058664043642852 62-63 0.0011724885787621068 64-65 0.003389295930438187 66-67 3.0486386617086E-4 68-69 5.783850563809752E-4 70-71 2.090642626469314E-4 72-73 0.0 74-75 2.8551271373838644E-6 76-77 0.006327267124991275 78-79 3.454393429298725E-4 80-81 5.934905129651267E-6 82-83 9.629146366846344E-5 84-85 0.0018853165597512188 86-87 0.005535038682154627 88-89 0.07874926688892996 90-91 0.002873721034488484 92-93 0.001391310227397954 94-95 0.0 96-97 0.01739477680377975 98-99 5.319022939456611E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 490.0 20-21 1808.0 22-23 3651.0 24-25 7200.0 26-27 9297.0 28-29 16796.0 30-31 48248.0 32-33 63040.0 34-35 87926.0 36-37 137060.0 38-39 148394.0 40-41 160068.0 42-43 180210.0 44-45 209617.0 46-47 212329.0 48-49 192839.0 50-51 177614.0 52-53 162288.0 54-55 177372.0 56-57 186644.0 58-59 192756.0 60-61 194129.0 62-63 187362.0 64-65 200161.0 66-67 213989.0 68-69 216529.0 70-71 216301.0 72-73 209655.0 74-75 214753.0 76-77 214667.0 78-79 228303.0 80-81 234162.0 82-83 228073.0 84-85 226034.0 86-87 239828.0 88-89 253769.0 90-91 275571.0 92-93 285581.0 94-95 353590.0 96-97 455711.0 98-99 1737490.0 100-101 1.2618008E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.25928500728105 #Duplication Level Percentage of deduplicated Percentage of total 1 89.14555483886552 75.11340712300172 2 7.435410236352135 12.53004700501699 3 1.8922635642003158 4.783223248945436 4 0.7095361686422542 2.3914004102640773 5 0.33897851088150577 1.4281043479854256 6 0.16581008321498084 0.8382623435215234 7 0.09598293622132109 0.5661217505235581 8 0.06015793284074963 0.4055091526942076 9 0.0394479619694603 0.29914713634870255 >10 0.11436759999438675 1.4384939542285826 >50 0.001990879272500651 0.10815300374823851 >100 4.434606671993796E-4 0.062111617200866415 >500 3.732075693251842E-5 0.019451231806733797 >1k 1.8506120713934273E-5 0.016567674713943242 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.677418773933475E-6 4.677418773933475E-6 2 0.0 1.4032256321800425E-5 0.0 1.87096750957339E-5 4.677418773933475E-6 3 0.0 1.4032256321800425E-5 0.0 2.806451264360085E-5 4.677418773933475E-6 4 0.0 3.74193501914678E-5 0.0 3.74193501914678E-5 4.677418773933475E-6 5 0.0 3.74193501914678E-5 0.0 3.74193501914678E-5 4.677418773933475E-6 6 0.0 4.2096768965401274E-5 0.0 3.74193501914678E-5 4.677418773933475E-6 7 0.0 4.2096768965401274E-5 0.0 5.1451606513268224E-5 4.677418773933475E-6 8 9.35483754786695E-6 4.677418773933475E-5 0.0 5.1451606513268224E-5 9.35483754786695E-6 9 1.87096750957339E-5 9.35483754786695E-5 0.0 1.0290321302653645E-4 9.35483754786695E-6 10-11 2.806451264360085E-5 9.35483754786695E-5 0.0 1.496774007658712E-4 9.35483754786695E-6 12-13 3.74193501914678E-5 9.588708486563623E-5 0.0 1.7072578524857183E-4 9.35483754786695E-6 14-15 3.74193501914678E-5 1.239515975092371E-4 0.0 2.1048384482700636E-4 9.35483754786695E-6 16-17 4.677418773933475E-5 1.4032256321800423E-4 0.0 2.5959674195330783E-4 9.35483754786695E-6 18-19 5.3790315900234965E-5 1.4733869137890444E-4 0.0 3.3443544233624343E-4 9.35483754786695E-6 20-21 6.548386283506865E-5 1.5903223831373813E-4 0.0 3.999193051713121E-4 9.35483754786695E-6 22-23 6.548386283506865E-5 1.7306449463553856E-4 0.0 5.61290252872017E-4 1.87096750957339E-5 24-25 7.48387003829356E-5 1.8475804157037223E-4 0.0 0.0011787095310312357 2.806451264360085E-5 26-27 9.35483754786695E-5 1.9645158850520593E-4 0.0 0.0030870963907960935 2.806451264360085E-5 28-29 9.35483754786695E-5 2.0346771666610616E-4 0.0 0.01653467536585483 2.806451264360085E-5 30-31 9.822579425260297E-5 2.1983868237487333E-4 0.0 0.02511072268786186 2.806451264360085E-5 32-33 1.122580505744034E-4 2.245161011488068E-4 0.0 0.03236539920623268 2.806451264360085E-5 34-35 1.1927417873530361E-4 2.689515795011748E-4 0.0 0.0420102367180835 3.2741931417534324E-5 36-37 1.2862901628317056E-4 2.993548015317424E-4 0.0 0.055212251207510735 3.2741931417534324E-5 38-39 1.3330643505710403E-4 3.1806447662747627E-4 0.0 0.0782345064128113 3.2741931417534324E-5 40-41 1.5435481953980466E-4 3.437902798841104E-4 0.0 0.12351192014448734 3.2741931417534324E-5 42-43 1.5435481953980466E-4 3.508064080450106E-4 0.0 0.14374175634174963 3.2741931417534324E-5 44-45 1.5435481953980466E-4 3.858870488495117E-4 0.0 0.1727323979025893 3.2741931417534324E-5 46-47 1.566935289267714E-4 4.18628980267046E-4 0.0 0.2043587649425405 3.2741931417534324E-5 48-49 1.637096570876716E-4 4.2330639904097943E-4 0.0 0.23076981004955585 3.2741931417534324E-5 50-51 1.7774191340947203E-4 4.700805867803142E-4 0.0 0.25494738769201797 3.2741931417534324E-5 52-53 1.8008062279643877E-4 4.817741337151479E-4 0.0 0.2881056093804324 3.2741931417534324E-5 54-55 1.8241933218340553E-4 4.911289712630149E-4 0.0 0.3542630205189474 3.2741931417534324E-5 56-57 1.87096750957339E-4 5.098386463587487E-4 0.0 0.4228409958729731 3.2741931417534324E-5 58-59 1.987902978921727E-4 5.098386463587487E-4 0.0 0.47916413403929303 3.2741931417534324E-5 60-61 2.058064260530729E-4 5.121773557457155E-4 0.0 0.5139267103671665 3.2741931417534324E-5 62-63 2.1048384482700636E-4 5.215321932935824E-4 0.0 0.5343834013749647 3.2741931417534324E-5 64-65 2.1983868237487333E-4 5.753225091938174E-4 0.0 0.5489605769839283 3.2741931417534324E-5 66-67 2.2217739176184006E-4 5.753225091938174E-4 0.0 0.5566221889356313 3.2741931417534324E-5 68-69 2.31532229309707E-4 5.823386373547176E-4 0.0 0.5642908170154953 3.2741931417534324E-5 70-71 2.3854835747060723E-4 5.96370893676518E-4 4.677418773933475E-6 0.5714238806457439 3.2741931417534324E-5 72-73 2.5024190440544095E-4 6.010483124504515E-4 4.677418773933475E-6 0.5771186380030079 3.2741931417534324E-5 74-75 2.5491932317937436E-4 6.15080568772252E-4 4.677418773933475E-6 0.5819925083654466 3.2741931417534324E-5 76-77 2.572580325663411E-4 6.431450814158528E-4 4.677418773933475E-6 0.586386943303557 3.2741931417534324E-5 78-79 2.572580325663411E-4 6.548386283506865E-4 4.677418773933475E-6 0.5906270234221277 3.2741931417534324E-5 80-81 2.572580325663411E-4 6.548386283506865E-4 4.677418773933475E-6 0.5928160554083286 3.2741931417534324E-5 82-83 2.642741607272413E-4 6.618547565115867E-4 4.677418773933475E-6 0.5944812164918489 3.2741931417534324E-5 84-85 2.7129028888814153E-4 6.712095940594536E-4 4.677418773933475E-6 0.5959850066276686 3.2741931417534324E-5 86-87 2.7129028888814153E-4 6.875805597682208E-4 4.677418773933475E-6 0.5962446033696218 3.2741931417534324E-5 88-89 2.7362899827510824E-4 7.03951525476988E-4 4.677418773933475E-6 0.5962820227198133 3.2741931417534324E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21930 0.0 45.780205 1 GTATCAA 38465 0.0 33.916534 1 ATCAACG 46505 0.0 27.17264 3 TCAACGC 46675 0.0 27.04657 4 CAACGCA 47765 0.0 26.429365 5 AACGCAG 49670 0.0 25.500607 6 TATCAAC 50440 0.0 25.43805 2 ACGCAGA 56935 0.0 22.217064 7 CGCAGAG 57735 0.0 21.89461 8 GTACATG 51510 0.0 19.466022 1 TACATGG 51790 0.0 18.603611 2 ACATGGG 52340 0.0 17.972588 3 AGAGTAC 63130 0.0 17.902956 10-11 GCAGAGT 70400 0.0 17.77009 9 GAGTACT 41210 0.0 16.872011 12-13 CAGAGTA 68885 0.0 16.241987 10-11 CATGGGG 37545 0.0 15.947073 4 AGTACTT 46355 0.0 15.636086 12-13 GTACTTT 48060 0.0 14.520508 14-15 TATACTG 13095 0.0 13.555681 5 >>END_MODULE