##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139807_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13508161 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00741151959915 33.0 31.0 34.0 30.0 34.0 2 32.16925434927819 33.0 31.0 34.0 30.0 34.0 3 32.22001055510073 34.0 31.0 34.0 30.0 34.0 4 35.8697512562961 37.0 35.0 37.0 35.0 37.0 5 35.74380265381794 37.0 35.0 37.0 35.0 37.0 6 35.757454030937296 37.0 35.0 37.0 33.0 37.0 7 35.67508878521658 37.0 35.0 37.0 33.0 37.0 8 35.65746188544836 37.0 35.0 37.0 33.0 37.0 9 37.28610652478898 39.0 37.0 39.0 34.0 39.0 10-11 37.19467305727257 39.0 37.0 39.0 33.0 39.0 12-13 37.16819820995619 39.0 37.0 39.0 33.0 39.0 14-15 38.367860954574056 40.0 38.0 41.0 33.0 41.0 16-17 38.35145453922262 40.0 38.0 41.0 33.0 41.0 18-19 38.39184556654307 40.0 38.0 41.0 33.5 41.0 20-21 38.36611296773644 40.0 38.0 41.0 34.0 41.0 22-23 38.297675938153674 40.0 38.0 41.0 33.5 41.0 24-25 38.208532968089145 40.0 38.0 41.0 33.0 41.0 26-27 38.05579162732032 40.0 37.0 41.0 33.0 41.0 28-29 37.956398643046555 40.0 37.0 41.0 33.0 41.0 30-31 37.8415897023028 40.0 37.0 41.0 33.0 41.0 32-33 38.008926839950334 40.0 37.0 41.0 33.0 41.0 34-35 37.99770525605041 40.0 37.0 41.0 33.0 41.0 36-37 37.917438661445146 40.0 37.0 41.0 33.0 41.0 38-39 37.791368852588484 40.0 37.0 41.0 33.0 41.0 40-41 37.74394329420987 40.0 37.0 41.0 33.0 41.0 42-43 37.66657928414898 40.0 37.0 41.0 32.5 41.0 44-45 37.66571173117643 40.0 37.0 41.0 32.5 41.0 46-47 37.702694362345795 40.0 37.0 41.0 32.5 41.0 48-49 37.62689088850776 40.0 37.0 41.0 32.0 41.0 50-51 37.56283779153367 40.0 36.5 41.0 32.0 41.0 52-53 37.42430977411959 39.5 36.0 41.0 31.5 41.0 54-55 37.30311524487218 39.0 36.0 41.0 31.0 41.0 56-57 37.13476152970307 39.0 35.5 41.0 31.0 41.0 58-59 36.97191063606285 39.0 35.0 40.0 31.0 41.0 60-61 36.82077526162606 39.0 35.0 40.0 31.0 41.0 62-63 36.59495409598036 38.0 35.0 40.0 31.0 41.0 64-65 36.37903164478642 38.0 35.0 40.0 30.5 41.0 66-67 36.13014929847588 37.5 34.5 40.0 30.0 41.0 68-69 35.84093353172403 37.0 34.0 39.5 30.0 41.0 70-71 35.559020427641414 36.5 34.0 39.0 30.0 41.0 72-73 35.24070010829733 36.0 34.0 39.0 29.0 40.0 74-75 34.906098887155984 35.5 34.0 38.5 29.0 40.0 76-77 33.82389336801808 35.0 32.5 37.0 28.0 39.0 78-79 34.1837068274981 35.0 33.0 37.0 29.0 39.0 80-81 34.068978061965566 35.0 33.0 36.5 29.0 39.0 82-83 33.814365750666305 35.0 33.0 36.0 29.0 37.5 84-85 33.611453497035484 35.0 33.0 36.0 29.0 37.0 86-87 33.43814193491309 35.0 33.0 35.0 29.0 37.0 88-89 33.23827352738395 35.0 33.0 35.0 29.0 36.0 90-91 33.11716424994825 35.0 33.0 35.0 29.0 36.0 92-93 33.06449460299767 35.0 33.0 35.0 29.0 36.0 94-95 33.03206338697893 34.0 33.0 35.0 29.0 35.5 96-97 32.9894867501716 34.0 33.0 35.0 29.0 35.0 98-99 33.08164573308589 34.0 33.0 35.0 29.0 35.0 100-101 32.53171027617742 34.0 32.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 2.0 19 22.0 20 99.0 21 629.0 22 2788.0 23 9395.0 24 24365.0 25 49884.0 26 88479.0 27 136205.0 28 192083.0 29 251198.0 30 316582.0 31 388965.0 32 479674.0 33 603050.0 34 793499.0 35 1083154.0 36 1636801.0 37 2696482.0 38 3176382.0 39 1520859.0 40 57562.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.082637599596275 22.140178814866065 15.39364240624612 24.38354117929154 2 13.939454286813135 22.91338719665789 40.812791570995536 22.33436694553344 3 16.977980940558822 27.812527552788275 31.513327387791723 23.696164118861184 4 12.1872918156661 19.630866111234536 39.28254186487709 28.89930020822227 5 12.631053183331172 38.496298644945085 36.088783661965536 12.78386450975821 6 28.555648692668083 39.418407879503356 19.239317624360563 12.786625803467993 7 25.015588724475524 33.1385078990397 24.5615446839877 17.284358692497076 8 23.746467043145252 37.31687089012339 21.864101264413417 17.072560802317945 9 25.441138878933998 16.409924341292644 21.65330277008099 36.49563400969236 10-11 23.61769303756448 27.20197442124061 29.704646694690712 19.4756858465042 12-13 24.547382874693305 24.881229206551506 29.580828952216372 20.99055896653882 14-15 21.737703600068137 26.088710372936774 27.160862237280114 25.012723789714975 16-17 21.285240085604546 29.047051630492117 27.84818747718509 21.819520806718252 18-19 21.37056810095756 28.34705671237655 29.38836587728304 20.89400930938285 20-21 22.244850479707583 27.575080339938395 29.09794393056127 21.082125249792753 22-23 21.95133066644108 27.561622444395372 28.93525397456228 21.55179291460126 24-25 21.70459026447261 27.71352600607262 28.98314234802928 21.598741381425494 26-27 21.66685634788959 27.825153626971723 28.882022576807557 21.62596744833113 28-29 21.619156943790593 27.885857915807645 28.920003377164573 21.57498176323719 30-31 21.85332006192056 27.749459764903612 28.85270502018861 21.544515152987223 32-33 21.690566311849267 27.891723595953682 28.7534795219421 21.664230570254954 34-35 21.79030529017175 27.920799711581196 28.800356811083848 21.488538187163204 36-37 21.7722806363092 27.893694516205386 28.74420283807504 21.589822009410373 38-39 21.63086945456988 27.963304349306874 28.808719616203682 21.59710657991957 40-41 21.80778922066366 27.831130073205664 28.70028951000582 21.66079119612485 42-43 21.724475653942182 27.988238316823207 28.470334052824462 21.816951976410152 44-45 21.812162437455054 28.04751555949281 28.331218620635156 21.809103382416982 46-47 21.89134131446139 28.018243177736274 28.074808670622424 22.015606837179913 48-49 21.836101953988145 28.14190901546274 28.064905634554805 21.95708339599431 50-51 21.868632090512282 28.218602162669626 27.93975814378698 21.97300760303111 52-53 21.961671705618315 28.114930563068995 27.858818306125453 22.06457942518723 54-55 21.938739716902145 28.05490044892561 27.873567316222104 22.13279251795014 56-57 21.95519338150007 28.074179896786745 27.87058533952748 22.100041382185704 58-59 21.92477666750888 28.10444268505656 27.88736610273016 22.083414544704397 60-61 21.884013933328482 27.935091823401585 27.993782770112425 22.187111473157508 62-63 22.07186873687408 28.012726401330788 27.97327380735043 21.942131054444708 64-65 21.811951546526778 27.952708920705604 27.97516837047709 22.26017116229053 66-67 21.903097799381037 27.995862025119568 27.81107120202598 22.289968973473417 68-69 21.856864162503996 28.252914643306674 27.835854568536494 22.054366625652836 70-71 21.874189414098943 28.066585641087478 27.880596531244016 22.17862841356956 72-73 21.887709174469673 28.051624917004204 27.597833670774364 22.462832237751762 74-75 21.831447635171926 28.094427328376714 27.575556668408858 22.498568368042502 76-77 21.95902803353898 27.802333957965057 27.76312448502346 22.475513523472497 78-79 21.949728863948444 27.765110805966316 27.737671384238787 22.547488945846453 80-81 22.22563473741079 27.80794882147446 27.453334813368013 22.51308162774674 82-83 22.237517670273306 28.02630163916876 27.547232245177018 22.188948445380912 84-85 22.049171357051854 27.76608762115635 27.504597535614234 22.680143486177563 86-87 21.94354873649685 28.030927264324728 27.55640653382286 22.46911746535556 88-89 22.241943895034744 27.706388949691945 27.55142574261365 22.500241412659655 90-91 22.31890650499867 27.93806328466342 27.607805108143236 22.135225102194667 92-93 22.036283599436118 27.86080985652205 27.63672107387474 22.466185470167098 94-95 22.20888870604569 27.569205160108552 27.736755034999533 22.48515109884622 96-97 22.134307786715503 27.916006034001516 27.798046568196266 22.151639611086715 98-99 22.381918605967936 28.311676923336016 27.957570664744836 21.348833805951212 100-101 25.97308640464316 35.57389562136241 28.855456003340542 9.597561970653896 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3123.0 1 2836.0 2 3908.0 3 5636.5 4 7533.0 5 11548.5 6 14891.0 7 17424.5 8 18963.0 9 18818.5 10 17790.5 11 16681.0 12 18577.0 13 24467.0 14 37794.5 15 56016.5 16 69971.0 17 76710.0 18 77655.5 19 74932.5 20 70665.5 21 67189.5 22 68009.5 23 75893.5 24 91536.0 25 114489.0 26 142328.5 27 171430.5 28 201922.0 29 233150.0 30 261552.5 31 291451.5 32 324121.5 33 355741.0 34 386407.5 35 415216.5 36 444578.0 37 469810.5 38 488940.5 39 504952.0 40 519705.0 41 535214.5 42 546775.5 43 556507.0 44 564661.5 45 569667.5 46 571257.0 47 570088.5 48 566615.5 49 557518.0 50 544789.5 51 526394.5 52 501805.0 53 474975.5 54 445041.0 55 410423.5 56 372359.0 57 331732.5 58 290060.5 59 248894.0 60 209270.5 61 171203.0 62 135238.0 63 104401.5 64 78139.0 65 58179.0 66 43964.0 67 33116.5 68 24794.5 69 17555.5 70 12247.5 71 8826.0 72 6194.5 73 4281.5 74 2967.0 75 2056.0 76 1389.0 77 899.5 78 594.5 79 428.5 80 295.5 81 203.5 82 161.5 83 113.5 84 74.5 85 57.5 86 48.0 87 41.0 88 33.0 89 24.5 90 18.5 91 14.5 92 11.0 93 6.0 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0038199130140660893 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.108023216483724E-4 20-21 0.0011289940477953154 22-23 0.002602530829809736 24-25 3.7029506332619543E-5 26-27 0.0078200341569905 28-29 1.5936989147688707E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03465884094993684 38-39 0.014888716774229921 40-41 0.024282059364238707 42-43 0.0012465449736113355 44-45 0.005286016438189619 46-47 0.004279003116553713 48-49 0.002538202534080939 50-51 0.0022315708735047924 52-53 1.6239159295475443E-4 54-55 0.0025323956093669135 56-57 0.014286095137859368 58-59 0.010039416952176972 60-61 0.0034458469771812897 62-63 0.0010906861664311254 64-65 0.003063145912890937 66-67 3.0523663535563796E-4 68-69 4.947254973614566E-4 70-71 2.730387159051856E-4 72-73 0.0 74-75 0.0 76-77 0.00593765407339136 78-79 2.833179554643062E-4 80-81 0.0 82-83 1.4111867891116137E-4 84-85 0.0019804224621392365 86-87 0.005631009240822119 88-89 0.08054369286358516 90-91 0.003019329153827817 92-93 0.0013325849705355943 94-95 0.0 96-97 0.016641987146336308 98-99 4.065112179383876E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 326.0 20-21 1248.0 22-23 2422.0 24-25 5248.0 26-27 6323.0 28-29 11520.0 30-31 34862.0 32-33 44637.0 34-35 62967.0 36-37 96578.0 38-39 105107.0 40-41 111465.0 42-43 125835.0 44-45 148198.0 46-47 148885.0 48-49 135839.0 50-51 123136.0 52-53 112061.0 54-55 121118.0 56-57 129244.0 58-59 77466.0 60-61 135898.0 62-63 128841.0 64-65 136066.0 66-67 146499.0 68-69 148368.0 70-71 148477.0 72-73 142677.0 74-75 144961.0 76-77 144613.0 78-79 155370.0 80-81 158356.0 82-83 152480.0 84-85 150371.0 86-87 159640.0 88-89 168730.0 90-91 181493.0 92-93 187697.0 94-95 227915.0 96-97 289081.0 98-99 1128456.0 100-101 7667687.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.56012015744648 #Duplication Level Percentage of deduplicated Percentage of total 1 89.99295690469319 76.9980820608945 2 7.092385684878927 12.136507428023885 3 1.6316066353781022 4.188013793179121 4 0.6106953855949082 2.090046822843938 5 0.2699463726576888 1.1548322040329337 6 0.14202431854148626 0.7290970655813409 7 0.07406894135271576 0.4436143265451251 8 0.04518642080946158 0.3092924475153978 9 0.032678847229336824 0.25164054859940055 >10 0.10523809280996771 1.4380707715576893 >50 0.0024920345061579105 0.14608197954648344 >100 6.920849078791391E-4 0.09534156361811126 >500 2.827664020233889E-5 0.019378988062046184 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 7.402932197802499E-6 2.2208796593407497E-5 0.0 2.9611728791209996E-5 0.0 3 7.402932197802499E-6 2.2208796593407497E-5 0.0 2.9611728791209996E-5 0.0 4 7.402932197802499E-6 5.182052538461749E-5 0.0 4.4417593186814994E-5 0.0 5 1.4805864395604998E-5 5.182052538461749E-5 0.0 4.4417593186814994E-5 0.0 6 1.4805864395604998E-5 5.182052538461749E-5 0.0 4.4417593186814994E-5 0.0 7 1.4805864395604998E-5 5.922345758241999E-5 0.0 4.4417593186814994E-5 7.402932197802499E-6 8 1.4805864395604998E-5 7.402932197802499E-5 0.0 4.4417593186814994E-5 7.402932197802499E-6 9 2.2208796593407497E-5 1.3325277956044497E-4 0.0 7.402932197802499E-5 7.402932197802499E-6 10-11 2.9611728791209996E-5 1.4065571175824747E-4 0.0 8.143225417582748E-5 1.4805864395604998E-5 12-13 2.9611728791209996E-5 1.4435717785714873E-4 0.0 1.0734251686813623E-4 1.4805864395604998E-5 14-15 3.331319489011125E-5 1.7767037274725998E-4 0.0 1.258498473626425E-4 1.8507330494506248E-5 16-17 4.4417593186814994E-5 1.9247623714286496E-4 0.0 1.4805864395604998E-4 2.2208796593407497E-5 18-19 5.182052538461749E-5 1.9987916934066747E-4 0.0 1.7026744054945747E-4 2.2208796593407497E-5 20-21 5.182052538461749E-5 2.0728210153846997E-4 0.0 2.2208796593407496E-4 2.9611728791209996E-5 22-23 8.513372027472874E-5 2.776099574175937E-4 0.0 4.6638472846155743E-4 3.7014660989012495E-5 24-25 1.258498473626425E-4 3.4053488109891494E-4 0.0 0.00106602223648356 4.4417593186814994E-5 26-27 1.4805864395604998E-4 3.7014660989012496E-4 0.0 0.0031388432518682594 4.4417593186814994E-5 28-29 1.5546157615385249E-4 3.7014660989012496E-4 0.0 0.017163698300605094 4.4417593186814994E-5 30-31 1.6656597445055622E-4 4.2566860137364373E-4 0.0 0.02583253190423182 4.4417593186814994E-5 32-33 1.8507330494506248E-4 4.367729996703474E-4 0.0 0.03188442897593536 4.4417593186814994E-5 34-35 1.92476237142865E-4 4.7378766065935994E-4 0.0 0.040175713037474164 5.182052538461749E-5 36-37 1.9987916934066747E-4 5.256081860439774E-4 0.0 0.05198338989296915 5.182052538461749E-5 38-39 1.9987916934066747E-4 5.589213809340887E-4 0.0 0.07389977066456345 5.922345758241999E-5 40-41 1.9987916934066747E-4 5.848316436263974E-4 0.0 0.11805826122445534 5.922345758241999E-5 42-43 1.9987916934066747E-4 5.959360419231011E-4 0.0 0.1372170497523682 5.922345758241999E-5 44-45 1.9987916934066747E-4 6.477565673077186E-4 0.0 0.16446354170638033 5.922345758241999E-5 46-47 1.9987916934066747E-4 6.958756265934348E-4 0.0 0.19594080941143655 5.922345758241999E-5 48-49 2.0358063543956872E-4 7.032785587912373E-4 0.0 0.22267649904380027 7.402932197802499E-5 50-51 2.1468503373627248E-4 7.550990841758548E-4 0.0 0.24812777993984525 7.402932197802499E-5 52-53 2.1468503373627248E-4 7.625020163736574E-4 0.0 0.2817111818551763 8.143225417582748E-5 54-55 2.1468503373627248E-4 7.6990494857146E-4 0.0 0.34875953877067356 8.883518637362999E-5 56-57 2.1838649983517373E-4 7.921137451648674E-4 0.0 0.4207493529282039 9.993958467033373E-5 58-59 2.2208796593407496E-4 7.958152112637687E-4 0.0 0.48242318106809656 1.1104398296703748E-4 60-61 2.2208796593407496E-4 8.106210756593736E-4 0.0 0.9298971192303676 1.1104398296703748E-4 62-63 2.2208796593407496E-4 8.291284061538798E-4 0.0 0.9411421732388294 1.2214838126374124E-4 64-65 2.2208796593407496E-4 9.438738552198186E-4 0.0 0.9527277621283904 1.258498473626425E-4 66-67 2.2949089813187746E-4 9.697841179121273E-4 0.0 0.9624441106380062 1.2955131346154372E-4 68-69 2.2949089813187746E-4 9.919929145055348E-4 0.0 0.9716829700208637 1.3325277956044497E-4 70-71 2.2949089813187746E-4 9.993958467033374E-4 0.0 0.9800778951331717 1.4065571175824747E-4 72-73 2.3319236423077872E-4 0.0010030973128022386 0.0 0.9865258490774577 1.4435717785714873E-4 74-75 2.3689383032967997E-4 0.0010660222364835598 0.0 0.9920484364970183 1.4805864395604998E-4 76-77 2.3689383032967997E-4 0.0011215442279670787 0.0 0.9970306098661395 1.4805864395604998E-4 78-79 2.5910262692308743E-4 0.0011326486262637824 0.0 1.0016093234304804 1.5176011005495123E-4 80-81 2.8131142351649495E-4 0.0011326486262637824 0.0 1.0041596335726233 1.6656597445055624E-4 82-83 2.8131142351649495E-4 0.0011326486262637824 0.0 1.0059141285035025 1.8507330494506248E-4 84-85 2.8131142351649495E-4 0.0011548574228571898 0.0 1.0075353706548211 1.8507330494506248E-4 86-87 2.8131142351649495E-4 0.0011770662194505973 0.0 1.0077833688834477 1.887747710439637E-4 88-89 2.8131142351649495E-4 0.0012140808804396099 0.0 1.0078203835444366 1.9617770324176621E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15895 0.0 47.19828 1 GTATCAA 27560 0.0 35.28172 1 GACCGAG 12545 0.0 27.807915 90-91 ACCGAGG 12925 0.0 27.374224 92-93 AGACCGA 12515 0.0 27.276194 90-91 TCAACGC 34745 0.0 27.229301 4 GAGACCG 12680 0.0 27.181356 88-89 ATCAACG 34980 0.0 27.117859 3 CGAGACC 12750 0.0 26.459513 88-89 CAACGCA 35760 0.0 26.433125 5 TATCAAC 36845 0.0 26.073933 2 AACGCAG 36645 0.0 25.90848 6 ACGAGAC 13440 0.0 25.573423 86-87 GCCCACG 13470 0.0 24.40153 82-83 CACGAGA 13755 0.0 24.250927 86-87 CCCACGA 13695 0.0 23.838163 84-85 CCACGAG 14320 0.0 23.389626 84-85 ATCTCCG 13880 0.0 22.812935 74-75 CGAGCCC 14295 0.0 22.32413 80-81 TCCGAGC 14135 0.0 22.290611 78-79 >>END_MODULE