##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139806_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17630492 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.06843649059822 33.0 31.0 34.0 30.0 34.0 2 32.2302429223189 34.0 31.0 34.0 30.0 34.0 3 32.28424884569302 34.0 31.0 34.0 30.0 34.0 4 35.91669081044363 37.0 35.0 37.0 35.0 37.0 5 35.792404772368236 37.0 35.0 37.0 35.0 37.0 6 35.80462842443648 37.0 35.0 37.0 35.0 37.0 7 35.72555014346735 37.0 35.0 37.0 33.0 37.0 8 35.70710715276692 37.0 35.0 37.0 33.0 37.0 9 37.34728174347035 39.0 37.0 39.0 34.0 39.0 10-11 37.26000213153439 39.0 37.0 39.0 33.5 39.0 12-13 37.23855752295512 39.0 37.0 39.0 33.0 39.0 14-15 38.4683691186837 40.0 38.0 41.0 34.0 41.0 16-17 38.45067015146259 40.0 38.0 41.0 33.0 41.0 18-19 38.48479568806134 40.0 38.0 41.0 33.5 41.0 20-21 38.45854173760901 40.0 38.0 41.0 34.0 41.0 22-23 38.391356406716966 40.0 38.0 41.0 34.0 41.0 24-25 38.30475299516989 40.0 38.0 41.0 33.5 41.0 26-27 38.16278129699226 40.0 38.0 41.0 33.0 41.0 28-29 38.066355971791985 40.0 37.5 41.0 33.0 41.0 30-31 37.9608577525008 40.0 37.0 41.0 33.0 41.0 32-33 38.127732535330225 40.0 37.5 41.0 33.0 41.0 34-35 38.11709227521509 40.0 38.0 41.0 33.0 41.0 36-37 38.0394800506232 40.0 37.0 41.0 33.0 41.0 38-39 37.91825862175517 40.0 37.0 41.0 33.0 41.0 40-41 37.87236082392434 40.0 37.0 41.0 33.0 41.0 42-43 37.79550622634345 40.0 37.0 41.0 33.0 41.0 44-45 37.79831741681591 40.0 37.0 41.0 33.0 41.0 46-47 37.83755006329581 40.0 37.0 41.0 33.0 41.0 48-49 37.76288693614127 40.0 37.0 41.0 33.0 41.0 50-51 37.704149043922996 40.0 37.0 41.0 32.0 41.0 52-53 37.56915332608262 40.0 36.5 41.0 32.0 41.0 54-55 37.46217501342506 39.5 36.0 41.0 32.0 41.0 56-57 37.304067634403765 39.0 36.0 41.0 31.0 41.0 58-59 37.15694009352509 39.0 35.5 41.0 31.0 41.0 60-61 37.01430482561587 39.0 35.0 40.0 31.0 41.0 62-63 36.80067489538136 38.5 35.0 40.0 31.0 41.0 64-65 36.609094565212985 38.0 35.0 40.0 31.0 41.0 66-67 36.363070493254355 38.0 35.0 40.0 31.0 41.0 68-69 36.07779545867864 37.0 34.5 40.0 30.0 41.0 70-71 35.79207958374332 37.0 34.0 39.0 30.0 41.0 72-73 35.474263920426196 36.0 34.0 39.0 30.0 40.5 74-75 35.11827732073321 36.0 34.0 39.0 29.5 40.0 76-77 33.995633705114386 35.0 32.5 37.0 28.5 39.0 78-79 34.310561809094544 35.0 33.0 37.0 29.0 39.0 80-81 34.165885542923874 35.0 33.0 37.0 29.0 39.0 82-83 33.900767310041246 35.0 33.0 36.0 29.0 38.5 84-85 33.693967533320304 35.0 33.0 36.0 29.0 37.0 86-87 33.517758441972354 35.0 33.0 35.5 29.0 37.0 88-89 33.30294059129065 35.0 33.0 35.0 29.0 36.5 90-91 33.1964558930016 35.0 33.0 35.0 29.0 36.0 92-93 33.14550498648662 35.0 33.0 35.0 29.0 36.0 94-95 33.105310401331195 35.0 33.0 35.0 29.0 36.0 96-97 33.04532103158788 34.0 33.0 35.0 29.0 35.0 98-99 33.12243397754064 34.0 33.0 35.0 29.0 35.0 100-101 32.60727681134043 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 5.0 19 17.0 20 88.0 21 695.0 22 3343.0 23 11348.0 24 29912.0 25 62385.0 26 110723.0 27 171636.0 28 242214.0 29 317585.0 30 399995.0 31 492228.0 32 603456.0 33 762841.0 34 1001529.0 35 1366186.0 36 2072850.0 37 3505650.0 38 4434925.0 39 1957041.0 40 83839.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.91102936889112 22.25770557055356 15.414272046406873 24.416993014148442 2 13.727872213415088 22.907966831321154 41.10316691590596 22.2609940393578 3 16.77215247311306 27.89369122540653 31.680335409811594 23.65382089166882 4 12.053146333068868 19.736732247744417 39.800607946732285 28.409513472454428 5 12.5424350040827 38.4885685549785 36.42982850393511 12.539167937003686 6 28.271167928836014 39.75510155927583 19.43989424685369 12.533836265034465 7 24.738816137405582 33.269599055999116 24.888448944022663 17.10313586257264 8 23.40883056468305 37.49577720236055 22.134691419842394 16.96070081311401 9 25.158163481767836 16.711065125125266 21.96956273256583 36.161208660541064 10-11 23.35875822410401 27.288132401523452 30.086585218381877 19.266524155990655 12-13 24.255037806091856 24.946584020457287 29.868919710238373 20.929458463212484 14-15 21.506943765381024 26.287851184187033 27.30687833328758 24.898326717144364 16-17 21.17138307881595 29.21555167036745 28.02718154433807 21.585883706478526 18-19 21.208763718177927 28.639400476228737 29.41644779511019 20.735388010483145 20-21 22.01255178897012 27.898366488607213 29.150692229321045 20.938389493101617 22-23 21.73062514781676 27.820738045357686 28.983603877123336 21.46503292970222 24-25 21.55863723418673 27.98152294083914 28.966301657773585 21.493538167200537 26-27 21.546710459466777 28.100516624101896 28.896101278986663 21.45667163744466 28-29 21.515010468788372 28.139210452814247 28.93226081620291 21.413518262194476 30-31 21.73534737115409 27.986862983420796 28.884131028263848 21.393658617161265 32-33 21.554571943825568 28.13091555077152 28.81121074598902 21.503301759413898 34-35 21.667027503051195 28.169892843172196 28.796112881590197 21.366966772186412 36-37 21.641346586241653 28.123971564977808 28.77423205227398 21.46044979650656 38-39 21.513027079663 28.224210752811135 28.827432038100586 21.435330129425274 40-41 21.67244624267474 27.975044442528823 28.80041877516405 21.552090539632385 42-43 21.687179514374687 28.09517365205706 28.586653429906132 21.63099340366212 44-45 21.603879348065174 28.14676989046908 28.4697690177222 21.779581743743538 46-47 21.659725961372168 28.12116823214624 28.282358991092334 21.936746815389267 48-49 21.591642010829958 28.315565540268352 28.3251100271428 21.767682421758895 50-51 21.62684889580814 28.380024631382927 28.219482917632423 21.773643555176513 52-53 21.685263552994467 28.27896274295413 27.92199258856706 22.113781115484336 54-55 21.65022868465881 27.997469590770212 28.148581353225126 22.20372037134585 56-57 21.674171278093056 27.694922812238946 28.414014509855757 22.216891399812244 58-59 21.523612731618226 27.46188226702861 28.604958885837778 22.40954611551539 60-61 21.60276280665303 27.274809097021553 28.862347055514736 22.260081040810686 62-63 21.368807921180252 27.782560721718426 28.88020416284271 21.968427194258616 64-65 20.91909968959376 28.014560005088118 28.67919877149957 22.387141533818546 66-67 21.015874716944886 28.652397716961236 28.14687098920099 22.18485657689289 68-69 21.113447414937127 28.945356602609195 27.70674608376102 22.23444989869266 70-71 21.114480221968527 28.56042204457357 27.69082744111514 22.634270292342766 72-73 21.000854737933906 28.17990163724869 27.607810072661003 23.2114335521564 74-75 21.47886417447471 27.785403168127893 27.69110726254796 23.04462539484944 76-77 21.866991871155147 27.627158494550535 27.592522234014705 22.913327400279616 78-79 22.06573078340642 27.49342472408293 26.929015564515602 23.511828927995047 80-81 21.982225079782168 27.92950428436971 26.812953185336045 23.275317450512077 82-83 21.935000103618798 28.06025394315508 26.903567535161958 23.10117841806416 84-85 21.927088588785324 28.0662669062848 26.894395688193214 23.112248816736667 86-87 22.273625343263866 28.358326430865795 26.81094433284955 22.55710389302079 88-89 22.434876139213454 28.025037140090003 27.18011903307377 22.359967687622774 90-91 22.184477042315482 28.011428136837484 27.436830504021465 22.36726431682557 92-93 21.95969679498532 27.4875642330228 27.35366557698527 23.199073395006614 94-95 21.781568132156405 27.471771853637755 28.030505304901077 22.716154709304764 96-97 21.32377860613962 27.770539065637035 28.31934920138572 22.58633312683763 98-99 21.570313930430217 27.828868868046875 28.73242717130805 21.86839003021486 100-101 22.224585720852275 30.829307271492123 26.026003671686972 20.920103335968637 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3278.0 1 2963.5 2 4120.5 3 5972.0 4 8059.5 5 12320.5 6 15742.5 7 18110.0 8 19506.0 9 19353.5 10 18406.5 11 17527.5 12 19463.5 13 25562.0 14 39335.0 15 58317.0 16 73878.5 17 82540.5 18 84775.0 19 82679.5 20 78914.0 21 76174.0 22 77613.0 23 87105.0 24 105107.0 25 131423.0 26 165504.0 27 203235.0 28 244148.5 29 287477.5 30 329810.5 31 371632.0 32 415043.0 33 459122.5 34 501441.0 35 541769.0 36 585035.5 37 622892.0 38 653228.5 39 680889.5 40 704735.5 41 725156.0 42 737387.5 43 748165.5 44 758904.0 45 763827.0 46 763139.5 47 756623.5 48 744913.5 49 725285.5 50 698587.0 51 663649.0 52 622304.5 53 578641.5 54 531327.5 55 483625.0 56 435371.5 57 384883.0 58 334191.0 59 283498.5 60 232774.0 61 185975.0 62 145550.0 63 111626.0 64 83487.5 65 62137.0 66 46791.5 67 35729.5 68 27209.0 69 19779.0 70 14164.5 71 10308.0 72 7338.5 73 5040.5 74 3435.5 75 2331.0 76 1582.0 77 1035.5 78 699.0 79 487.5 80 340.5 81 230.0 82 169.0 83 119.0 84 82.5 85 65.0 86 48.0 87 35.0 88 23.5 89 16.5 90 13.0 91 10.5 92 9.0 93 6.0 94 2.0 95 1.0 96 1.0 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004809848755213411 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.586911584770295E-4 20-21 0.0010975739248653643 22-23 0.002464851962664612 24-25 1.7022327875398148E-5 26-27 0.007830207054343936 28-29 1.8739608567624105E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03719842322123924 38-39 0.016835217991481247 40-41 0.02540671822109606 42-43 0.0013330729299882403 44-45 0.005279958100901359 46-47 0.004336943729469335 48-49 0.0025708800997646317 50-51 0.0021809608393555725 52-53 2.454029584062845E-4 54-55 0.00251006853931093 56-57 0.014018883830377537 58-59 0.009590365947347104 60-61 0.003210793810307168 62-63 0.001062633626178492 64-65 0.0028578801766946786 66-67 3.129435295955486E-4 68-69 6.010926312829934E-4 70-71 2.388145637626707E-4 72-73 0.0 74-75 0.0 76-77 0.006290008211634573 78-79 3.542246795556303E-4 80-81 3.487097113004403E-6 82-83 1.2377657027642878E-4 84-85 0.001828729381614084 86-87 0.0051572621251942475 88-89 0.0770553724795995 90-91 0.0028228318296060627 92-93 0.0013184846232017445 94-95 0.0 96-97 0.01851966565233855 98-99 5.8416806081156133E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 399.0 20-21 1629.0 22-23 3099.0 24-25 5885.0 26-27 7455.0 28-29 13147.0 30-31 39629.0 32-33 53025.0 34-35 75739.0 36-37 115413.0 38-39 82053.0 40-41 132590.0 42-43 146507.0 44-45 169582.0 46-47 173486.0 48-49 158820.0 50-51 145792.0 52-53 25530.0 54-55 24927.0 56-57 24813.0 58-59 25253.0 60-61 166718.0 62-63 163741.0 64-65 171945.0 66-67 184534.0 68-69 188092.0 70-71 187132.0 72-73 181575.0 74-75 186267.0 76-77 187500.0 78-79 199229.0 80-81 201299.0 82-83 196057.0 84-85 193703.0 86-87 205269.0 88-89 215881.0 90-91 234347.0 92-93 243334.0 94-95 300612.0 96-97 382933.0 98-99 1603004.0 100-101 1.0612547E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.11874725239299 #Duplication Level Percentage of deduplicated Percentage of total 1 89.1042117848006 74.95334670249338 2 7.577557632591985 12.74829310572893 3 1.8133661213837404 4.576142593221932 4 0.6918411023608939 2.3278722731325194 5 0.31486099956499364 1.3242856421021758 6 0.15697398859961545 0.7922673163326642 7 0.10039495345183817 0.5911568400381653 8 0.06042463346472382 0.40662755761900726 9 0.041670976213991226 0.31547792843146877 >10 0.13566601150968846 1.7284353735747504 >50 0.002484637576429617 0.13761545212989137 >100 5.129458587819411E-4 0.07787111384237311 >500 3.4212622740569287E-5 0.02060810135276745 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.671991456619588E-6 0.0 2 0.0 2.2687965826478352E-5 0.0 5.671991456619588E-6 0.0 3 0.0 2.2687965826478352E-5 0.0 1.1343982913239176E-5 0.0 4 0.0 7.373588893605465E-5 0.0 2.8359957283097942E-5 0.0 5 1.1343982913239176E-5 7.940788039267424E-5 0.0 3.403194873971753E-5 0.0 6 1.1343982913239176E-5 7.940788039267424E-5 0.0 3.403194873971753E-5 1.1343982913239176E-5 7 1.1343982913239176E-5 8.507987184929383E-5 0.0 3.970394019633712E-5 1.1343982913239176E-5 8 1.1343982913239176E-5 9.6423854762533E-5 0.0 4.5375931652956705E-5 1.1343982913239176E-5 9 1.1343982913239176E-5 1.3045580350225054E-4 0.0 6.239190602281547E-5 1.1343982913239176E-5 10-11 2.2687965826478352E-5 1.3045580350225054E-4 0.0 9.92598504908428E-5 1.1343982913239176E-5 12-13 3.403194873971753E-5 1.3045580350225054E-4 0.0 1.417997864154897E-4 1.1343982913239176E-5 14-15 3.970394019633712E-5 1.5597976505703868E-4 0.0 1.985197009816856E-4 1.1343982913239176E-5 16-17 5.1047923109576294E-5 1.588157607853485E-4 0.0 2.864355685592892E-4 1.7015974369858766E-5 18-19 5.6719914566195884E-5 1.7299573942689746E-4 0.0 4.055473891483006E-4 2.2687965826478352E-5 20-21 5.6719914566195884E-5 1.9568370525337582E-4 0.0 5.445111798354805E-4 3.970394019633712E-5 22-23 6.522790175112527E-5 2.0702768816661498E-4 0.0 8.990106458742048E-4 5.1047923109576294E-5 24-25 7.940788039267424E-5 2.3538764544971292E-4 0.0 0.0016392055309630612 6.239190602281547E-5 26-27 8.507987184929383E-5 2.4956762409126187E-4 0.0 0.0037123184083575206 6.239190602281547E-5 28-29 8.507987184929383E-5 2.4956762409126187E-4 0.0 0.016746554775669335 6.239190602281547E-5 30-31 1.0493184194746238E-4 2.835995728309794E-4 0.0 0.02740422672265754 6.522790175112527E-5 32-33 1.1343982913239177E-4 2.89271564287599E-4 0.0 0.04080147054319301 7.373588893605465E-5 34-35 1.3896379068717993E-4 3.431554831254851E-4 0.0 0.05854629581522739 9.075186330591341E-5 36-37 1.6448775224196807E-4 3.913674105067516E-4 0.0 0.08116619774422631 9.075186330591341E-5 38-39 1.6448775224196807E-4 3.970394019633712E-4 0.0 0.1303281836944766 9.92598504908428E-5 40-41 1.6448775224196807E-4 4.2539935924646913E-4 0.0 0.4446103943100397 1.0209584621915259E-4 42-43 1.6448775224196807E-4 4.395793378880181E-4 0.0 0.4864441672983374 1.0209584621915259E-4 44-45 1.7015974369858765E-4 4.906272609975944E-4 0.0 0.5547434524232222 1.0209584621915259E-4 46-47 1.7866773088351704E-4 5.274952054656217E-4 0.0 0.6315875926775044 1.0776783767577219E-4 48-49 1.8150372661182682E-4 5.274952054656217E-4 0.0 0.6960497755819861 1.1343982913239177E-4 50-51 1.8717571806844643E-4 6.06903085858296E-4 0.0 0.7576277508307765 1.2478381204563093E-4 52-53 1.92847709525066E-4 6.21083064499845E-4 0.0 0.9749274155253297 1.3329179923056032E-4 54-55 1.985197009816856E-4 6.267550559564645E-4 0.0 1.7174875210515963 1.3612779495887013E-4 56-57 1.985197009816856E-4 6.295910516847743E-4 0.0 2.5359048403186932 1.3896379068717993E-4 58-59 1.985197009816856E-4 6.295910516847743E-4 0.0 3.380869915598498 1.417997864154897E-4 60-61 2.1553567535154437E-4 6.409350345980135E-4 0.0 4.022034665850505 1.417997864154897E-4 62-63 2.1553567535154437E-4 6.551150132395624E-4 0.0 4.039217963968333 1.417997864154897E-4 64-65 2.1553567535154437E-4 7.089989320774485E-4 0.0 4.050006091718824 1.417997864154897E-4 66-67 2.1553567535154437E-4 7.146709235340682E-4 0.0 4.0586133387542445 1.417997864154897E-4 68-69 2.2120766680816395E-4 7.28850902175617E-4 0.0 4.066140071417179 1.417997864154897E-4 70-71 2.2120766680816395E-4 7.373588893605465E-4 0.0 4.073462612387674 1.503077736004191E-4 72-73 2.2120766680816395E-4 7.401948850888563E-4 0.0 4.079350139519645 1.7015974369858765E-4 74-75 2.2687965826478354E-4 7.713908381002639E-4 0.0 4.084732859411978 1.7299573942689743E-4 76-77 2.2687965826478354E-4 8.167667697532207E-4 0.0 4.08989720763323 1.7866773088351704E-4 78-79 2.3255164972140312E-4 8.337827441230795E-4 0.0 4.094414948828428 1.8150372661182682E-4 80-81 2.3255164972140312E-4 8.366187398513893E-4 2.835995728309794E-6 4.097089292800224 1.8433972234013662E-4 82-83 2.3255164972140312E-4 8.422907313080088E-4 5.671991456619588E-6 4.098858954134689 2.0135569670999537E-4 84-85 2.3255164972140312E-4 8.451267270363187E-4 5.671991456619588E-6 4.100407407802346 2.0419169243830518E-4 86-87 2.3255164972140312E-4 8.67814692862797E-4 5.671991456619588E-6 4.100671155405079 2.0419169243830518E-4 88-89 2.3255164972140312E-4 8.905026586892754E-4 5.671991456619588E-6 4.10070235135809 2.0419169243830518E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18560 0.0 45.472626 1 TATCTCG 21370 0.0 35.457268 94-95 CCGTCTT 8945 0.0 34.04722 92-93 GTATCAA 31980 0.0 33.472656 1 TATGCCG 8885 0.0 32.530052 88-89 TGCCGTC 9175 0.0 31.967169 90-91 GCCGTCT 8865 0.0 31.79556 90-91 ATGCCGT 9415 0.0 29.232525 88-89 CGTATGC 10405 0.0 27.839705 86-87 TCAACGC 37430 0.0 27.638136 4 ATCAACG 37620 0.0 27.543985 3 CTCGTAT 10495 0.0 27.279226 84-85 CAACGCA 38440 0.0 26.956419 5 AACGCAG 39900 0.0 26.077133 6 TCGTATG 10685 0.0 25.654537 84-85 TATCAAC 40995 0.0 25.590662 2 TCTCGTA 10945 0.0 24.717813 82-83 CTATCTC 35145 0.0 24.387897 94-95 ACGCAGA 45885 0.0 22.657146 7 CGCAGAG 46870 0.0 22.135408 8 >>END_MODULE