##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139805_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15154766 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03624879460362 33.0 31.0 34.0 30.0 34.0 2 32.20027184847328 33.0 31.0 34.0 30.0 34.0 3 32.25152687939887 34.0 31.0 34.0 30.0 34.0 4 35.89398740963734 37.0 35.0 37.0 35.0 37.0 5 35.768612065669636 37.0 35.0 37.0 35.0 37.0 6 35.780254013819814 37.0 35.0 37.0 33.0 37.0 7 35.69955458236703 37.0 35.0 37.0 33.0 37.0 8 35.68247982185934 37.0 35.0 37.0 33.0 37.0 9 37.317308957459325 39.0 37.0 39.0 34.0 39.0 10-11 37.22507490382893 39.0 37.0 39.0 33.0 39.0 12-13 37.200603394338124 39.0 37.0 39.0 33.0 39.0 14-15 38.4181110087744 40.0 38.0 41.0 33.0 41.0 16-17 38.39832324035884 40.0 38.0 41.0 33.0 41.0 18-19 38.432318288517294 40.0 38.0 41.0 33.5 41.0 20-21 38.4052743100233 40.0 38.0 41.0 34.0 41.0 22-23 38.33550682980035 40.0 38.0 41.0 34.0 41.0 24-25 38.24790770407438 40.0 38.0 41.0 33.0 41.0 26-27 38.09854376183684 40.0 37.5 41.0 33.0 41.0 28-29 38.00202009000995 40.0 37.0 41.0 33.0 41.0 30-31 37.893125718784134 40.0 37.0 41.0 33.0 41.0 32-33 38.05881451208849 40.0 37.0 41.0 33.0 41.0 34-35 38.044352304522036 40.0 37.0 41.0 33.0 41.0 36-37 37.964842193463724 40.0 37.0 41.0 33.0 41.0 38-39 37.837836807528994 40.0 37.0 41.0 33.0 41.0 40-41 37.79123335885257 40.0 37.0 41.0 33.0 41.0 42-43 37.713484939670515 40.0 37.0 41.0 33.0 41.0 44-45 37.71562603416064 40.0 37.0 41.0 32.5 41.0 46-47 37.754953874677675 40.0 37.0 41.0 33.0 41.0 48-49 37.67932410735598 40.0 37.0 41.0 32.0 41.0 50-51 37.61361071973319 40.0 36.5 41.0 32.0 41.0 52-53 37.47877558172995 39.5 36.0 41.0 32.0 41.0 54-55 37.357230811226 39.0 36.0 41.0 31.0 41.0 56-57 37.19185522604387 39.0 36.0 41.0 31.0 41.0 58-59 37.033339040732386 39.0 35.0 40.5 31.0 41.0 60-61 36.87900425275246 39.0 35.0 40.0 31.0 41.0 62-63 36.65536722985301 38.0 35.0 40.0 31.0 41.0 64-65 36.43854272578326 38.0 35.0 40.0 31.0 41.0 66-67 36.18408621840361 37.5 35.0 40.0 30.0 41.0 68-69 35.894820911582 37.0 34.0 40.0 30.0 41.0 70-71 35.61061233046225 36.5 34.0 39.0 30.0 41.0 72-73 35.29509531529633 36.0 34.0 39.0 29.5 40.0 74-75 34.956945140229465 35.5 34.0 38.5 29.0 40.0 76-77 33.87575674493978 35.0 32.5 37.0 28.5 39.0 78-79 34.23513037392243 35.0 33.0 37.0 29.0 39.0 80-81 34.12702675556352 35.0 33.0 36.5 29.0 39.0 82-83 33.87851879693331 35.0 33.0 36.0 29.0 38.0 84-85 33.666111914904235 35.0 33.0 36.0 29.0 37.0 86-87 33.48327064292372 35.0 33.0 35.5 29.0 37.0 88-89 33.27987500026273 35.0 33.0 35.0 29.0 36.5 90-91 33.161052795188596 35.0 33.0 35.0 29.0 36.0 92-93 33.09914049807983 35.0 33.0 35.0 29.0 36.0 94-95 33.068056739793654 34.0 33.0 35.0 29.0 35.5 96-97 33.02493502102759 34.0 33.0 35.0 29.0 35.0 98-99 33.10938183591976 34.0 33.0 35.0 29.0 35.0 100-101 32.590496003011616 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 3.0 18 10.0 19 25.0 20 132.0 21 682.0 22 3023.0 23 10142.0 24 26241.0 25 54592.0 26 96547.0 27 149263.0 28 211071.0 29 277016.0 30 349344.0 31 430376.0 32 531941.0 33 671448.0 34 884553.0 35 1209738.0 36 1837591.0 37 3043760.0 38 3611724.0 39 1690903.0 40 64640.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.810342964055 22.221280091028788 15.476919933966649 24.491457010949556 2 13.853357243135967 22.755385892006657 40.915503483363494 22.47575338149388 3 16.91958820083398 27.737432567418065 31.518394939255412 23.82458429249254 4 12.205434250848874 19.66410434842742 39.250833698125064 28.879627702598643 5 12.694527912869127 38.31378854678456 36.25505006147901 12.736633478867306 6 28.691845192462885 39.43552807083923 19.13403347831303 12.738593258384853 7 24.97768028882795 33.03275682382691 24.584015352002137 17.405547535343008 8 23.60714114622423 37.49791319773595 21.842798496525777 17.052147159514046 9 25.177960517503205 16.621761101425122 21.73008148063784 36.470196900433834 10-11 23.653258651436783 27.150204760667368 29.734216945349072 19.462319642546774 12-13 24.496343262574953 24.743915544456442 29.598936070672423 21.160805122296182 14-15 21.696527679807133 26.052365308708826 27.007774319973006 25.24333269151104 16-17 21.398479527826428 29.01076796566836 27.74954096948775 21.841211537017465 18-19 21.45871533843926 28.32397561044493 29.186943125966863 21.03036592514895 20-21 22.203480493263008 27.59326548916902 28.922186857757954 21.281067159810014 22-23 21.957390640790315 27.600084146266006 28.75884422628746 21.683680986656217 24-25 21.755618352544012 27.78277053405469 28.780069428888496 21.681541684512805 26-27 21.768865194125215 27.81981442472305 28.707491924395985 21.70382845675575 28-29 21.69449835095788 27.828175866684095 28.80583701412326 21.671488768234763 30-31 21.902194038600378 27.707637347858917 28.65245106619319 21.73771754734752 32-33 21.832620893413054 27.896946585639803 28.61193843383818 21.65849408710896 34-35 21.899432182734067 27.93113342840864 28.605617683900597 21.563816704956697 36-37 21.833631229082027 27.917207997660746 28.528225587358406 21.720935185898817 38-39 21.72722760122962 27.941396291611515 28.658178225608783 21.673197881550085 40-41 21.93715396862287 27.793789327300882 28.575057993175484 21.69399871090076 42-43 21.84614563604484 27.946475562696072 28.352756227667008 21.85462257359208 44-45 21.90510487170681 28.04431251997954 28.181489265822073 21.869093342491574 46-47 22.019941885022064 27.98745158932813 27.975094797958434 22.017511727691375 48-49 21.92713958701535 28.106819506939225 27.946160490896826 22.019880415148602 50-51 21.934065224403813 28.153845600059046 27.899085437317904 22.01300373821923 52-53 22.082495691679053 28.068370621162504 27.853539926531507 21.995593760626935 54-55 22.006106008491546 28.01435795608957 27.849789490169563 22.129746545249322 56-57 22.076764892637936 28.06810494422261 27.80882808259725 22.04630208054221 58-59 22.006295676735572 28.17724079530605 27.838937240948052 21.977526287010328 60-61 22.1114139563624 28.15901434414157 27.798469510510497 21.93110218898553 62-63 22.06937418472209 28.233632704139527 27.750302628130253 21.94669048300813 64-65 22.01698891297637 28.177384722533493 27.7284300270032 22.07719633748694 66-67 22.085496215126255 28.150590390745478 27.656595739243862 22.107317654884405 68-69 22.027146347411037 28.085792649229536 27.74392505441617 22.143135948943257 70-71 22.046667095300286 27.929373977689977 27.810572921188754 22.213386005820983 72-73 22.076235819959898 27.96771250952187 27.741921343248492 22.21413032726974 74-75 21.974815824621494 28.030915791149834 27.7539540430842 22.240314341144472 76-77 22.0806186642901 27.954563931759047 27.732928586464823 22.23188881748603 78-79 22.025282241313068 27.972208484262893 27.701819067778523 22.300690206645516 80-81 22.067818149372577 27.98302999016473 27.696976751029112 22.25217510943358 82-83 22.089900983300968 27.911856187808503 27.804384092691652 22.193858736198877 84-85 22.114911406378102 27.949696539880726 27.75235123498012 22.18304081876105 86-87 22.044722796760748 27.90565678884806 27.82339321784515 22.226227196546038 88-89 22.071712160816524 27.86712332238986 27.770979237052494 22.290185279741117 90-91 22.096131013863697 27.870280111599694 27.8471883278888 22.186400546647807 92-93 22.138215870355868 27.790876762603244 27.87239308262066 22.198514284420227 94-95 21.97403685482746 27.798358210523244 27.94273923887402 22.28486569577527 96-97 21.940281185114692 27.82843455698784 27.998121222748175 22.233163035149296 98-99 22.11672959095176 28.44594153097025 28.053186382318522 21.384142495759466 100-101 22.69357717942232 31.114053158602793 25.26827922073697 20.924090441237915 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3032.0 1 2677.0 2 3680.5 3 5306.5 4 7065.0 5 10875.0 6 13954.0 7 16193.0 8 17588.5 9 17231.5 10 16037.5 11 15133.0 12 17073.5 13 22785.0 14 35605.5 15 53389.0 16 67580.0 17 75040.5 18 76850.5 19 74758.0 20 70918.5 21 68219.0 22 69784.0 23 78001.0 24 93895.5 25 117737.0 26 147262.5 27 179851.5 28 216448.5 29 255139.5 30 291071.0 31 327212.0 32 365388.0 33 402090.5 34 436928.5 35 469872.5 36 504009.0 37 534855.5 38 559321.0 39 578425.5 40 594162.5 41 609459.5 42 621181.0 43 631365.5 44 639684.0 45 644346.5 46 645174.0 47 643205.5 48 641018.0 49 629406.5 50 608155.0 51 585126.5 52 554813.0 53 520316.5 54 485464.5 55 447412.0 56 409035.0 57 368074.5 58 324507.0 59 278721.0 60 231649.5 61 189076.5 62 150384.5 63 116469.0 64 87518.5 65 65054.0 66 49220.5 67 37464.5 68 28564.5 69 20947.0 70 14995.5 71 10900.5 72 7742.5 73 5282.5 74 3646.5 75 2466.5 76 1652.0 77 1095.0 78 726.5 79 503.5 80 370.5 81 274.0 82 196.5 83 130.5 84 87.0 85 63.5 86 49.5 87 37.0 88 24.5 89 18.0 90 15.0 91 10.0 92 6.0 93 4.5 94 3.0 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0038997632823891838 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.410839072012066E-4 20-21 0.0012042924414020168 22-23 0.0026893083329951077 24-25 2.6404080724271855E-5 26-27 0.008082710428644491 28-29 2.2464438051256248E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03557433243894454 38-39 0.01542025289955466 40-41 0.024561650540201933 42-43 0.0012315011845502018 44-45 0.005359825236543731 46-47 0.004493494174588064 48-49 0.0026042978961084164 50-51 0.002131212479924103 52-53 1.7263825383887234E-4 54-55 0.0024685386563352034 56-57 0.013698135777242128 58-59 0.009386244517971674 60-61 0.003204157324799207 62-63 0.0010340003165631739 64-65 0.0030123857666571534 66-67 2.6328140468992456E-4 68-69 3.9185522642198287E-4 70-71 1.7452047821308163E-4 72-73 0.0 74-75 0.0 76-77 0.005551267372845446 78-79 2.9986260045761535E-4 80-81 0.0 82-83 1.0701396035637873E-4 84-85 0.0017010366473157838 86-87 0.005064757389540435 88-89 0.07350784041942304 90-91 0.002792184516633134 92-93 0.0013726054389744705 94-95 4.711098037290602E-6 96-97 0.016542051008695848 98-99 6.0454834973666123E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 392.0 20-21 1249.0 22-23 2629.0 24-25 5382.0 26-27 7477.0 28-29 12628.0 30-31 34629.0 32-33 45447.0 34-35 63503.0 36-37 102204.0 38-39 114770.0 40-41 117064.0 42-43 131912.0 44-45 154973.0 46-47 155423.0 48-49 142169.0 50-51 130064.0 52-53 125866.0 54-55 137551.0 56-57 145191.0 58-59 145992.0 60-61 143022.0 62-63 137489.0 64-65 144258.0 66-67 155619.0 68-69 153383.0 70-71 152487.0 72-73 146088.0 74-75 149729.0 76-77 150801.0 78-79 160942.0 80-81 163783.0 82-83 159324.0 84-85 157568.0 86-87 166341.0 88-89 177463.0 90-91 192709.0 92-93 199105.0 94-95 243739.0 96-97 319360.0 98-99 1225032.0 100-101 8880009.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.0849579625883 #Duplication Level Percentage of deduplicated Percentage of total 1 89.3283538442195 75.1117087785841 2 7.360036003968321 12.377366359936252 3 1.800600111710932 4.542101541019364 4 0.6745861714486426 2.2689019947361 5 0.3150249631225091 1.3244430390661053 6 0.16685104076911145 0.8417797649450905 7 0.10325897657518103 0.607776869320879 8 0.06269581834924881 0.4217420200261326 9 0.04104526213408027 0.31061602269968014 >10 0.14307344696384755 1.875783979938249 >50 0.0036952501123014994 0.20723376372559188 >100 7.509716977215917E-4 0.09347480774582266 >500 2.8138928553897175E-5 0.017071058256702132 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3197168468322111E-5 2 0.0 2.6394336936644223E-5 0.0 6.598584234161056E-6 1.3197168468322111E-5 3 0.0 3.2992921170805276E-5 0.0 6.598584234161056E-6 1.3197168468322111E-5 4 0.0 7.258442657577161E-5 0.0 3.959150540496633E-5 1.3197168468322111E-5 5 0.0 9.238017927825478E-5 0.0 3.959150540496633E-5 1.3197168468322111E-5 6 2.6394336936644223E-5 9.897876351241583E-5 0.0 3.959150540496633E-5 1.9795752702483166E-5 7 2.6394336936644223E-5 9.897876351241583E-5 0.0 4.619008963912739E-5 1.9795752702483166E-5 8 2.6394336936644223E-5 1.1217593198073793E-4 0.0 4.619008963912739E-5 1.9795752702483166E-5 9 2.6394336936644223E-5 1.9795752702483167E-4 0.0 5.9387258107449495E-5 3.2992921170805276E-5 10-11 2.6394336936644223E-5 1.9795752702483167E-4 0.0 8.248230292701319E-5 3.959150540496633E-5 12-13 2.6394336936644223E-5 2.1775327972731483E-4 0.0 9.238017927825478E-5 3.959150540496633E-5 14-15 3.2992921170805276E-5 3.7941859346426066E-4 0.0 9.238017927825478E-5 4.619008963912739E-5 16-17 4.619008963912739E-5 3.9591505404966334E-4 0.0 9.238017927825478E-5 5.9387258107449495E-5 18-19 4.619008963912739E-5 4.2560868310338805E-4 0.0 9.56794713953353E-5 7.258442657577161E-5 20-21 4.619008963912739E-5 4.7179877274251543E-4 0.0 1.0887663986365741E-4 7.918301080993266E-5 22-23 4.619008963912739E-5 5.212881544987233E-4 0.0 1.319716846832211E-4 9.56794713953353E-5 24-25 4.619008963912739E-5 5.641789520207702E-4 0.0 1.4186956103446268E-4 1.1547522409781846E-4 26-27 4.619008963912739E-5 5.93872581074495E-4 0.0 1.7486248220526798E-4 1.1877451621489899E-4 28-29 4.619008963912739E-5 6.070697495428171E-4 0.0 3.7611930134718013E-4 1.2207380833197953E-4 30-31 4.619008963912739E-5 6.499605470648639E-4 0.0 0.0011184600276902988 1.286723925661406E-4 32-33 4.619008963912739E-5 6.697562997673471E-4 0.0 0.003101334590055696 1.3857026891738217E-4 34-35 5.9387258107449495E-5 7.720343553968435E-4 0.0 0.005697877486198071 1.3857026891738217E-4 36-37 5.9387258107449495E-5 8.578159504409372E-4 0.0 0.009544852094713965 1.3857026891738217E-4 38-39 5.9387258107449495E-5 8.974074558459036E-4 0.0 0.014925997537672306 1.4846814526862375E-4 40-41 6.598584234161055E-5 9.633932981875141E-4 0.0 0.020973599988280914 1.550667295027848E-4 42-43 6.598584234161055E-5 9.897876351241583E-4 0.0 0.02656590012673241 1.6166531373694584E-4 44-45 6.928513445869107E-5 0.0010854671065194936 0.0 0.033022614799859004 1.6496460585402637E-4 46-47 7.258442657577161E-5 0.0011778472857977484 0.0 0.040122691435816295 1.8476035855650956E-4 48-49 7.588371869285214E-5 0.0011844458700319095 0.0 0.04707100063438789 2.1775327972731483E-4 50-51 8.908088716117426E-5 0.0013329140153005331 0.0 0.053771862924178446 2.1775327972731483E-4 52-53 9.238017927825478E-5 0.0013395125995346942 0.0 0.06009330662050473 2.507462008981201E-4 54-55 9.238017927825478E-5 0.0013560090601200969 0.0 0.06754640751298964 2.8373912206892536E-4 56-57 9.238017927825478E-5 0.0013791041049396606 0.0 0.07494671973160126 2.8373912206892536E-4 58-59 9.238017927825478E-5 0.001412097026110466 0.0 0.08230084186057376 2.870384141860059E-4 60-61 1.0227805562949637E-4 0.001445089947281271 0.0 0.08984632293233694 3.101334590055696E-4 62-63 1.0887663986365741E-4 0.0014714842842179154 0.0 0.09707177266874328 3.2333062747389173E-4 64-65 1.1217593198073793E-4 0.001662843227008586 0.0 0.10400688469884656 3.266299195909722E-4 66-67 1.2207380833197953E-4 0.0016925368560623108 0.0 0.11125542948007247 3.2992921170805275E-4 68-69 1.2537310044906006E-4 0.0017123326087647938 0.0 0.11881410772030396 3.332285038251333E-4 70-71 1.3197168468322113E-4 0.0017552234062868407 0.0 0.12591088506414416 3.431263801763749E-4 72-73 1.5176743738570426E-4 0.001781617743223485 0.0 0.1316186604266935 3.827178855813412E-4 74-75 1.5176743738570426E-4 0.001808012080160129 0.0 0.1368216440953295 3.8931646981550227E-4 76-77 1.550667295027848E-4 0.0018542021697992566 0.0 0.1414241565986568 3.926157619325828E-4 78-79 1.5836602161986533E-4 0.0018805965067359009 0.0 0.1454756873184317 3.9591505404966334E-4 80-81 1.6166531373694584E-4 0.0018937936752042228 0.0 0.1477488995871002 4.157108067521465E-4 82-83 1.6496460585402637E-4 0.0019003922594383839 0.0 0.14924017962402059 4.421051436887907E-4 84-85 1.6496460585402637E-4 0.0019102901357896255 0.0 0.15063578018954565 4.4540443580587126E-4 86-87 1.682638979711069E-4 0.0019531809333116724 0.0 0.1508997235589121 4.553023121571128E-4 88-89 1.7816177432234849E-4 0.002025765359887444 0.0 0.15095581152490245 4.619008963912739E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16245 0.0 46.12297 1 GTATCAA 28160 0.0 33.88173 1 TCAACGC 34290 0.0 27.285284 4 ATCAACG 34405 0.0 27.133081 3 CAACGCA 35185 0.0 26.519651 5 AACGCAG 36135 0.0 25.868904 6 TATCAAC 37115 0.0 25.49196 2 ACGCAGA 41950 0.0 22.263014 7 CGCAGAG 42785 0.0 21.838335 8 GTACATG 38865 0.0 19.203123 1 TACATGG 38945 0.0 18.754105 2 ACATGGG 39470 0.0 17.98301 3 GCAGAGT 51855 0.0 17.921438 9 AGAGTAC 45740 0.0 17.835047 10-11 GAGTACT 28605 0.0 17.373919 12-13 CAGAGTA 50355 0.0 16.458885 10-11 CATGGGG 28825 0.0 16.163656 4 AGTACTT 32345 0.0 15.124923 12-13 GTACTTT 33165 0.0 14.92916 14-15 TATGCCG 4550 0.0 14.548167 42-43 >>END_MODULE