##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139804_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13271175 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.04989739039686 33.0 31.0 34.0 30.0 34.0 2 32.21725762790408 33.0 31.0 34.0 30.0 34.0 3 32.271438813820176 34.0 31.0 34.0 30.0 34.0 4 35.90463828560772 37.0 35.0 37.0 35.0 37.0 5 35.78059222337133 37.0 35.0 37.0 35.0 37.0 6 35.791356304170506 37.0 35.0 37.0 33.0 37.0 7 35.70931209934312 37.0 35.0 37.0 33.0 37.0 8 35.69320674318589 37.0 35.0 37.0 33.0 37.0 9 37.33456962175542 39.0 37.0 39.0 34.0 39.0 10-11 37.24309347137687 39.0 37.0 39.0 33.0 39.0 12-13 37.21530034077615 39.0 37.0 39.0 33.0 39.0 14-15 38.44328776464782 40.0 38.0 41.0 33.0 41.0 16-17 38.42420772840386 40.0 38.0 41.0 33.0 41.0 18-19 38.45231842696671 40.0 38.0 41.0 33.5 41.0 20-21 38.423281246768724 40.0 38.0 41.0 34.0 41.0 22-23 38.35699088337688 40.0 38.0 41.0 34.0 41.0 24-25 38.269634503614 40.0 38.0 41.0 33.0 41.0 26-27 38.12287024289519 40.0 38.0 41.0 33.0 41.0 28-29 38.02717096803799 40.0 37.0 41.0 33.0 41.0 30-31 37.92168768993708 40.0 37.0 41.0 33.0 41.0 32-33 38.090203141839815 40.0 37.5 41.0 33.0 41.0 34-35 38.07669618648691 40.0 37.5 41.0 33.0 41.0 36-37 37.99441882532492 40.0 37.0 41.0 33.0 41.0 38-39 37.86764246659337 40.0 37.0 41.0 33.0 41.0 40-41 37.82192023132246 40.0 37.0 41.0 33.0 41.0 42-43 37.74362044886248 40.0 37.0 41.0 33.0 41.0 44-45 37.74140506521444 40.0 37.0 41.0 32.5 41.0 46-47 37.77775317860906 40.0 37.0 41.0 33.0 41.0 48-49 37.70085486754094 40.0 37.0 41.0 32.0 41.0 50-51 37.635267427302864 40.0 37.0 41.0 32.0 41.0 52-53 37.49269840216648 39.5 36.0 41.0 32.0 41.0 54-55 37.368493918469234 39.0 36.0 41.0 31.5 41.0 56-57 37.20008720119324 39.0 36.0 41.0 31.0 41.0 58-59 37.035681116923506 39.0 35.0 40.5 31.0 41.0 60-61 36.8776829522103 39.0 35.0 40.0 31.0 41.0 62-63 36.65059052819004 38.0 35.0 40.0 31.0 41.0 64-65 36.425164424447416 38.0 35.0 40.0 31.0 41.0 66-67 36.161926061600205 37.5 35.0 40.0 30.0 41.0 68-69 35.86484657035431 37.0 34.0 39.5 30.0 41.0 70-71 35.57457763109552 36.5 34.0 39.0 30.0 41.0 72-73 35.25138889784324 36.0 34.0 39.0 29.5 40.0 74-75 34.91018228162106 35.5 34.0 38.5 29.0 40.0 76-77 33.8320301085525 35.0 32.5 37.0 28.5 39.0 78-79 34.17449437991027 35.0 33.0 37.0 29.0 39.0 80-81 34.061978595663206 35.0 33.0 36.5 29.0 39.0 82-83 33.820167599624455 35.0 33.0 36.0 29.0 37.5 84-85 33.61480915345443 35.0 33.0 36.0 29.0 37.0 86-87 33.43961936404595 35.0 33.0 35.0 29.0 37.0 88-89 33.24315950619179 35.0 33.0 35.0 29.0 36.0 90-91 33.1330797048834 35.0 33.0 35.0 29.0 36.0 92-93 33.07766331516677 35.0 33.0 35.0 29.0 36.0 94-95 33.053753329417916 34.5 33.0 35.0 29.0 35.5 96-97 33.01774214019676 34.0 33.0 35.0 29.0 35.0 98-99 33.10257997653872 34.0 33.0 35.0 29.0 35.0 100-101 32.584109243526626 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 20.0 20 83.0 21 530.0 22 2590.0 23 9315.0 24 23411.0 25 49340.0 26 87260.0 27 134961.0 28 188690.0 29 247722.0 30 308609.0 31 380340.0 32 467424.0 33 588779.0 34 777164.0 35 1067273.0 36 1626263.0 37 2726531.0 38 3222610.0 39 1316897.0 40 45362.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.93444062036707 22.431954970076124 15.507858196429481 24.12574621312732 2 14.252436785910449 22.767719789608005 40.788161430138686 22.191681994342858 3 17.361966819064627 27.581031822728587 31.11672478134001 23.940276576866783 4 12.458829003460508 19.384967796747464 38.83527268685704 29.32093051293499 5 12.931952144403189 38.31785052943692 35.9729338208561 12.777263505303788 6 29.369501946888654 39.01243107712769 18.876188430941497 12.741878545042168 7 25.616073934674212 32.700668930972576 24.215451909872336 17.467805224480877 8 23.910836832458315 37.643230535352 21.460202280506437 16.985730351683255 9 25.45384263262296 16.617255065960627 21.2290999101436 36.69980239127281 10-11 24.129773738949265 27.00096638014343 29.4272587016598 19.442001179247505 12-13 24.941657389040532 24.457615847880838 29.305332798339258 21.29539396473937 14-15 22.07983467929554 25.760473356729907 26.59423148289432 25.565460481080237 16-17 21.882263627749616 28.742722479358456 27.302431774127005 22.072582118764917 18-19 21.943151367535265 28.122284042425417 28.661519593474605 21.273044996564717 20-21 22.734428737726887 27.361920510438516 28.367943506455536 21.535707245379065 22-23 22.43864679804402 27.344777688718423 28.235923496007985 21.980652017229573 24-25 22.272454505072186 27.492628163742467 28.271906955098263 21.96301037608708 26-27 22.267658958329037 27.57739240383858 28.215130976081966 21.939817661750418 28-29 22.164873832200833 27.614745353735593 28.269034253229385 21.951346560834185 30-31 22.460699500772925 27.469135091729953 28.15348045374423 21.916684953752892 32-33 22.19652676007487 27.652299216339454 28.15329455152589 21.997879472059786 34-35 22.35587517512781 27.6163954652415 28.17655051314476 21.85117884648593 36-37 22.281727110354748 27.625083440957667 28.118182643101363 21.97500680558623 38-39 22.17206635505344 27.64316212275009 28.228858686242635 21.95591283595383 40-41 22.367294993189642 27.486426412872948 28.16163769242056 21.98464090151685 42-43 22.23783152947529 27.612750142126703 27.952720234852258 22.19669809354575 44-45 22.345852139341726 27.672392910292253 27.824938602552013 22.156816347814004 46-47 22.430960171850845 27.642939245831965 27.622599704056327 22.303500878260863 48-49 22.286852218828002 27.790457217751385 27.661988698544015 22.260701864876598 50-51 22.333796024825975 27.84304138050004 27.589962327915092 22.233200266758892 52-53 22.474295553079696 27.72636930854383 27.53707429589902 22.26226084247745 54-55 22.405870346208413 27.657174595403035 27.59586204733418 22.341093011054372 56-57 22.432042848837423 27.77781840963226 27.531259776756244 22.258878964774077 58-59 22.377477807356158 27.864753376562767 27.540701588603728 22.21706722747735 60-61 22.438600336625335 27.863841616579748 27.52960228271066 22.16795576408426 62-63 22.418359447196284 27.930497185901565 27.486072066010138 22.165071300892013 64-65 22.407897177002827 27.855705066271145 27.48189091899502 22.254506837731004 66-67 22.449582101927927 27.86244555577336 27.381446138378664 22.30652620392005 68-69 22.380044212842417 27.847887302085457 27.429417231972575 22.342651253099554 70-71 22.376168701810876 27.688004368592978 27.510658720741038 22.42516820885511 72-73 22.3828702365752 27.75539302349675 27.459311235954466 22.402425503973586 74-75 22.290591068231038 27.837451562404315 27.435526710738582 22.436430658626065 76-77 22.39377465423781 27.751470702045015 27.431140861009823 22.423613782707346 78-79 22.352737785245424 27.807642170046325 27.399225868886663 22.44039417582159 80-81 22.375969675037467 27.811731408287155 27.391649536465255 22.42064938021012 82-83 22.351972398143324 27.79490725326026 27.500925205140312 22.352195143456104 84-85 22.37967516508177 27.818164746092144 27.441221968962516 22.36093811986357 86-87 22.321229732865028 27.81620755013452 27.48028195133526 22.38228076566519 88-89 22.299812484134847 27.81804362140195 27.4467930355654 22.435350858897802 90-91 22.346224565526445 27.829620877926832 27.50255147716225 22.321603079384474 92-93 22.364174970489387 27.791218266022533 27.489537146197918 22.35506961729016 94-95 22.186607792716327 27.839057481796758 27.55474582254369 22.41958890294322 96-97 22.186747630694995 27.872331900259994 27.589498927296415 22.351421541748596 98-99 22.356856632400948 28.473691833165347 27.704399262575436 21.46505227185827 100-101 22.905940460029786 31.196132798068426 24.86966650822256 21.028260233679227 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3456.0 1 2798.5 2 2929.0 3 3907.0 4 4955.5 5 7478.5 6 9645.0 7 11271.5 8 12326.0 9 12136.5 10 11202.0 11 10183.0 12 11053.0 13 14479.0 14 23169.5 15 36328.0 16 47448.0 17 53508.0 18 54796.0 19 52788.0 20 49174.0 21 45488.0 22 44039.5 23 47018.0 24 55158.5 25 69040.0 26 87268.0 27 107692.5 28 133202.0 29 163978.0 30 196240.5 31 231320.0 32 269589.0 33 309165.0 34 347256.0 35 382573.0 36 420647.5 37 455189.5 38 483169.5 39 506429.0 40 526736.5 41 545926.0 42 557307.0 43 565197.0 44 573090.0 45 579252.0 46 582455.0 47 581804.0 48 575414.5 49 562925.5 50 547786.0 51 526459.0 52 497639.0 53 466542.5 54 434939.0 55 401193.5 56 366096.0 57 329602.5 58 291001.0 59 249687.0 60 206219.5 61 165866.0 62 130622.0 63 99895.5 64 73810.0 65 54376.5 66 40769.0 67 30736.0 68 23117.5 69 16470.0 70 11569.0 71 8282.0 72 5760.5 73 3842.5 74 2474.5 75 1657.5 76 1112.0 77 716.5 78 480.5 79 324.5 80 214.5 81 146.0 82 109.5 83 81.0 84 59.5 85 44.5 86 38.0 87 30.5 88 18.0 89 10.0 90 9.0 91 8.5 92 6.5 93 4.5 94 3.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0039031962128447555 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.500643311537976E-4 20-21 0.0011717607174189766 22-23 0.0026565116828862092 24-25 7.5378570023299515E-6 26-27 0.007819497642142462 28-29 1.546476697972007E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03529098460820161 38-39 0.01549450352371854 40-41 0.02406877531394406 42-43 0.0013429723918934316 44-45 0.005442612042075446 46-47 0.004545030280674493 48-49 0.0024536413405031455 50-51 0.0022446417465900917 52-53 1.4883558679797774E-4 54-55 0.0025813010551564465 56-57 0.014171925680771266 58-59 0.009839261570835638 60-61 0.0035040528964842086 62-63 0.0011320668328652587 64-65 0.002943465044512931 66-67 3.2015868942912416E-4 68-69 4.440232594040354E-4 70-71 2.3075954154784184E-4 72-73 0.0 74-75 0.0 76-77 0.00578713698893468 78-79 2.493709956685618E-4 80-81 4.586296768990617E-6 82-83 1.1137253235012425E-4 84-85 0.001549268135122472 86-87 0.004898477044007138 88-89 0.07408440635874469 90-91 0.0026114494633032045 92-93 0.0011102757057450175 94-95 0.0 96-97 0.016756976457788637 98-99 2.1496120299597878E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 342.0 20-21 1094.0 22-23 2247.0 24-25 4458.0 26-27 5362.0 28-29 8197.0 30-31 20985.0 32-33 27882.0 34-35 39833.0 36-37 66391.0 38-39 75379.0 40-41 78902.0 42-43 89854.0 44-45 105766.0 46-47 105881.0 48-49 96980.0 50-51 89952.0 52-53 89035.0 54-55 97840.0 56-57 103596.0 58-59 105673.0 60-61 105266.0 62-63 101344.0 64-65 107107.0 66-67 114873.0 68-69 114405.0 70-71 114524.0 72-73 110851.0 74-75 113776.0 76-77 114892.0 78-79 124269.0 80-81 127955.0 82-83 125299.0 84-85 124748.0 86-87 133268.0 88-89 141996.0 90-91 153747.0 92-93 162633.0 94-95 209131.0 96-97 285100.0 98-99 1138686.0 100-101 8331656.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.72813776378312 #Duplication Level Percentage of deduplicated Percentage of total 1 89.0557277292016 74.56470239964554 2 7.452976734097604 12.480477254855893 3 1.902377192112445 4.778474988596091 4 0.7058964240134004 2.3641357214702343 5 0.3390890745202035 1.4195648372810659 6 0.18220523701001484 0.9153423111394369 7 0.11204211656565197 0.656675443980833 8 0.06371830196863984 0.42680118122436883 9 0.04143833261300444 0.3122598979550793 >10 0.14067278084698664 1.8195910178572798 >50 0.003255111204080203 0.17841118834727412 >100 5.851347290437759E-4 0.07657832007054316 >500 1.5831117375265836E-5 0.006985437576423132 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.2745894768172374E-5 0.0 7.535127824024625E-6 0.0 3 0.0 6.0281022592197E-5 0.0 7.535127824024625E-6 0.0 4 0.0 1.1302691736036937E-4 0.0 7.535127824024625E-6 7.535127824024625E-6 5 0.0 1.2809717300841863E-4 0.0 7.535127824024625E-6 7.535127824024625E-6 6 0.0 1.2809717300841863E-4 0.0 7.535127824024625E-6 1.507025564804925E-5 7 0.0 1.3563230083244324E-4 0.0 7.535127824024625E-6 1.507025564804925E-5 8 0.0 1.3563230083244324E-4 0.0 7.535127824024625E-6 1.507025564804925E-5 9 0.0 2.109835790726895E-4 0.0 2.2605383472073873E-5 1.507025564804925E-5 10-11 0.0 2.109835790726895E-4 0.0 2.6372947384086187E-5 2.2605383472073873E-5 12-13 0.0 2.109835790726895E-4 0.0 4.5210766944147746E-5 2.2605383472073873E-5 14-15 0.0 2.8633485731293577E-4 0.0 4.5210766944147746E-5 2.6372947384086187E-5 16-17 0.0 3.089402407850096E-4 0.0 5.2745894768172374E-5 3.01405112960985E-5 18-19 0.0 3.3908075208110807E-4 0.0 6.404858650420932E-5 3.01405112960985E-5 20-21 0.0 3.6168613555318197E-4 0.0 7.535127824024625E-5 3.01405112960985E-5 22-23 0.0 4.257347220573913E-4 0.0 8.665396997628318E-5 3.7675639120123125E-5 24-25 0.0 4.897833085616007E-4 0.0 1.3563230083244324E-4 4.5210766944147746E-5 26-27 0.0 5.349940755057484E-4 0.0 1.8837819560061562E-4 4.5210766944147746E-5 28-29 0.0 5.500643311537976E-4 0.0 3.089402407850096E-4 4.5210766944147746E-5 30-31 0.0 5.990426620099576E-4 0.0 8.627721358508195E-4 4.897833085616006E-5 32-33 0.0 6.0281022592197E-4 0.0 0.0026222244827605696 5.2745894768172374E-5 34-35 0.0 6.894641958982532E-4 0.0 0.0049166709051760675 5.2745894768172374E-5 36-37 7.535127824024625E-6 7.83653293698561E-4 0.0 0.008266035222955014 5.2745894768172374E-5 38-39 1.507025564804925E-5 8.477018802027702E-4 0.0 0.013793051481877077 5.2745894768172374E-5 40-41 1.8837819560061562E-5 9.569612336511274E-4 0.0 0.020194142568385996 5.2745894768172374E-5 42-43 2.2605383472073873E-5 0.001002172000595275 0.0 0.026015028812445017 5.651345868018469E-5 44-45 2.2605383472073873E-5 0.0010888259705715583 0.0 0.03307544358355609 6.0281022592197E-5 46-47 2.2605383472073873E-5 0.0011604096848997923 0.0 0.04086299818968554 7.535127824024625E-5 48-49 2.2605383472073873E-5 0.0011679448127238168 0.0 0.04836045037459004 9.042153388829549E-5 50-51 2.2605383472073873E-5 0.0012432960909640632 0.0 0.05591064845426272 9.042153388829549E-5 52-53 2.2605383472073873E-5 0.0012508312187880877 0.0 0.06329130615789483 1.0172422562433243E-4 54-55 2.2605383472073873E-5 0.0012508312187880877 0.0 0.07109393101967233 1.1679448127238168E-4 56-57 2.2605383472073873E-5 0.001265901474436137 0.0 0.07812420527948731 1.20562045184394E-4 58-59 2.2605383472073873E-5 0.0012809717300841864 0.0 0.08382076191444993 1.20562045184394E-4 60-61 2.2605383472073873E-5 0.0013299500609403464 0.0 0.0900862207001264 1.20562045184394E-4 62-63 2.2605383472073873E-5 0.0013600905722364449 0.0 0.0956584477259926 1.2809717300841863E-4 64-65 2.2605383472073873E-5 0.0014957228730688881 0.0 0.10141905294745943 1.2809717300841863E-4 66-67 2.2605383472073873E-5 0.0015371660761010235 0.0 0.1073115229058467 1.2809717300841863E-4 68-69 2.2605383472073873E-5 0.0015635390234851098 0.0 0.11332455490941834 1.2809717300841863E-4 70-71 2.2605383472073873E-5 0.0015710741513091343 0.0 0.11931498152951792 1.2809717300841863E-4 72-73 2.2605383472073873E-5 0.0015786092791331588 0.0 0.12431453884075826 1.4316742865646786E-4 74-75 2.2605383472073873E-5 0.001650192993461393 0.0 0.1286698427230445 1.4316742865646786E-4 76-77 2.2605383472073873E-5 0.001774522602557799 0.0 0.13279155764278594 1.469349925684802E-4 78-79 2.2605383472073873E-5 0.00180843067776591 0.0 0.13670605654736676 1.507025564804925E-4 80-81 2.2605383472073873E-5 0.0018121982416779221 0.0 0.13891008143589395 1.544701203925048E-4 82-83 2.2605383472073873E-5 0.0018498738807980453 0.0 0.14034552328637065 1.5823768430451711E-4 84-85 2.2605383472073873E-5 0.0018724792642701193 0.0 0.14171691655034313 1.5823768430451711E-4 86-87 2.2605383472073873E-5 0.0019101549033902422 0.0 0.14199194871592002 1.5823768430451711E-4 88-89 2.2605383472073873E-5 0.0019968088733665255 0.0 0.14205976486633626 1.6200524821652942E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13995 0.0 44.654175 1 GTATCAA 23705 0.0 34.172264 1 TCAACGC 28315 0.0 27.803425 4 ATCAACG 28685 0.0 27.504686 3 CAACGCA 29260 0.0 26.93482 5 AACGCAG 30280 0.0 26.126791 6 TATCAAC 30835 0.0 25.713411 2 ACGCAGA 35255 0.0 22.379005 7 CGCAGAG 36010 0.0 21.921726 8 GTACATG 36390 0.0 20.879389 1 TACATGG 36475 0.0 20.371489 2 ACATGGG 37200 0.0 19.2462 3 AGAGTAC 38525 0.0 17.976677 10-11 GCAGAGT 44225 0.0 17.791393 9 GAGTACT 22980 0.0 17.34414 12-13 CATGGGG 27145 0.0 17.230204 4 CAGAGTA 42595 0.0 16.470732 10-11 AGTACTT 25780 0.0 15.726927 12-13 GTACTTT 26005 0.0 15.277978 14-15 GTGGTAT 7955 0.0 14.199973 1 >>END_MODULE