##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139803_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9397010 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.17537163416874 33.0 31.0 34.0 30.0 34.0 2 32.31770084314053 34.0 31.0 34.0 30.0 34.0 3 33.0360640246206 34.0 31.0 34.0 30.0 37.0 4 35.864328653475944 37.0 35.0 37.0 35.0 37.0 5 35.76904068421764 37.0 35.0 37.0 35.0 37.0 6 35.77558680899563 37.0 35.0 37.0 33.0 37.0 7 35.76347880868489 37.0 35.0 37.0 33.0 37.0 8 36.026110965083575 37.0 35.0 37.0 33.0 39.0 9 37.29989528584092 39.0 37.0 39.0 34.0 39.0 10-11 37.23475600217516 39.0 37.0 39.0 33.0 39.0 12-13 37.362025261226705 39.0 37.0 39.0 33.0 39.5 14-15 38.413619385315116 40.0 38.0 41.0 33.0 41.0 16-17 38.38742993782065 40.0 38.0 41.0 33.0 41.0 18-19 38.41853132006883 40.0 38.0 41.0 33.5 41.0 20-21 38.38453752486142 40.0 38.0 41.0 34.0 41.0 22-23 38.31860527541481 40.0 38.0 41.0 34.0 41.0 24-25 38.219057403672764 40.0 38.0 41.0 33.0 41.0 26-27 38.0730057804616 40.0 37.5 41.0 33.0 41.0 28-29 37.97492376938379 40.0 37.0 41.0 33.0 41.0 30-31 37.88586514538646 40.0 37.0 41.0 33.0 41.0 32-33 38.04430799206936 40.0 37.0 41.0 33.0 41.0 34-35 38.030228209984 40.0 37.0 41.0 33.0 41.0 36-37 37.93466841655109 40.0 37.0 41.0 33.0 41.0 38-39 37.820659725489705 40.0 37.0 41.0 33.0 41.0 40-41 37.773497857348616 40.0 37.0 41.0 33.0 41.0 42-43 37.70074461917445 40.0 37.0 41.0 32.5 41.0 44-45 37.71984767750918 40.0 37.0 41.0 32.5 41.0 46-47 37.73876203457561 40.0 37.0 41.0 32.5 41.0 48-49 37.66769530064166 40.0 37.0 41.0 32.0 41.0 50-51 37.58400323409427 40.0 36.5 41.0 32.0 41.0 52-53 37.453899643526 39.5 36.0 41.0 32.0 41.0 54-55 37.32481950698981 39.0 36.0 41.0 31.0 41.0 56-57 37.15890719000018 39.0 35.5 41.0 31.0 41.0 58-59 36.999671222696186 39.0 35.0 40.5 31.0 41.0 60-61 36.831381134434494 39.0 35.0 40.0 31.0 41.0 62-63 36.60781869652353 38.0 35.0 40.0 31.0 41.0 64-65 36.384827981074935 38.0 35.0 40.0 31.0 41.0 66-67 36.124566436195465 37.0 34.5 40.0 30.0 41.0 68-69 35.834200057175536 37.0 34.0 39.5 30.0 41.0 70-71 35.54378509144149 36.0 34.0 39.0 30.0 41.0 72-73 35.218196350118305 36.0 34.0 39.0 29.5 40.0 74-75 34.770469748602466 35.5 33.5 38.5 29.0 40.0 76-77 33.91497735562314 35.0 32.5 37.0 28.5 39.0 78-79 34.205129622955866 35.0 33.0 37.0 29.0 39.0 80-81 34.07516712715389 35.0 33.0 36.5 29.0 39.0 82-83 33.83008303733116 35.0 33.0 36.0 29.0 37.5 84-85 33.628659668682076 35.0 33.0 36.0 29.0 37.0 86-87 33.44016179573185 35.0 33.0 35.0 29.0 37.0 88-89 33.25416265207578 35.0 33.0 35.0 29.0 36.0 90-91 33.14456260514737 35.0 33.0 35.0 29.0 36.0 92-93 33.088250408166346 35.0 33.0 35.0 29.0 36.0 94-95 33.05867764071722 34.0 33.0 35.0 29.0 35.5 96-97 33.03095552768651 34.0 33.0 35.0 29.0 35.0 98-99 33.10303104111043 34.0 33.0 35.0 29.0 35.0 100-101 32.451885046989844 34.0 31.5 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 3.0 19 15.0 20 88.0 21 420.0 22 2005.0 23 6469.0 24 16778.0 25 34508.0 26 60884.0 27 93586.0 28 131084.0 29 171850.0 30 216253.0 31 266559.0 32 327663.0 33 412108.0 34 544107.0 35 744839.0 36 1128019.0 37 1867102.0 38 2228530.0 39 1085642.0 40 58496.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.056478260360606 0.009609562312637479 26.900815056896484 31.03309712043027 2 14.16608942851241 25.964170404747083 37.349130130746175 22.52061003599433 3 15.663109861541063 25.686447071994177 34.1323676360885 24.518075430376257 4 12.974861152643236 24.946860756772633 37.15904314244637 24.91923494813776 5 16.95537197470259 36.996736195875066 32.58479026839388 13.463101561028454 6 27.063087088339806 38.09548994839848 20.910821633689867 13.930601329571854 7 24.96407899959668 33.036710613269534 23.668922348704534 18.330288038429245 8 23.696973824652733 32.52468604375222 22.66816785339166 21.110172278203386 9 23.148160957581187 20.587633726046903 24.500069703022557 31.764135613349353 10-11 24.402368412931345 26.26922286982774 29.241769456454765 20.086639260786143 12-13 24.503554854150416 24.368522540680495 28.953528835235886 22.1743937699332 14-15 22.039462552450196 26.821100541555236 26.672728878653956 24.466708027340612 16-17 21.47808642921236 28.885869842826565 27.69987532201739 21.93616840594368 18-19 21.58762725874546 28.167726807029624 29.034109214721056 21.21053671950386 20-21 22.27090875567405 27.631332982312095 28.724970780009457 21.372787482004398 22-23 22.155226292736426 27.410821026423527 28.50296702679137 21.93098565404868 24-25 21.900359380936873 27.68648082735651 28.68653970037784 21.726620091328773 26-27 21.868324905184995 27.90380753838866 28.526131609057824 21.70173594736852 28-29 21.845069797363763 27.71294213260809 28.517399691783574 21.92458837824457 30-31 21.995023106699684 27.61130946787434 28.65674201591127 21.73692540951471 32-33 21.85762010698529 27.950832565560326 28.442961688394377 21.74858563906001 34-35 21.985723139388668 27.77945428074389 28.47348892163857 21.761333658228867 36-37 21.97621262150598 27.82508399308128 28.469713644522347 21.7289897408904 38-39 21.797824868048938 27.950089762738894 28.555393876112735 21.696691493099436 40-41 22.056393810438383 27.662963204062308 28.322804776933154 21.95783820856616 42-43 21.915787083698824 27.77384586894009 28.344287534892963 21.966079512468127 44-45 21.998695440688067 28.04855015768079 28.0339073729381 21.918847028693044 46-47 22.170461760438943 27.77859906368137 27.837816349730616 22.21312282614907 48-49 21.96940373501503 27.941740318474917 27.967826572645794 22.121029373864257 50-51 22.00295235384289 28.174793692412425 27.745766621750406 22.076487331994283 52-53 22.190737435424435 27.856881623280284 27.769954434229476 22.182426507065802 54-55 22.03421974685782 27.877610627535592 27.880637280239302 22.207532345367284 56-57 22.145759042357888 28.18552177069681 27.574512783890054 22.094206403055253 58-59 22.18493523689201 27.953608341871593 27.737756346772567 22.12370007446383 60-61 22.152725402675717 28.06717660885428 27.715017443605166 22.06508054486484 62-63 22.10740944494666 28.27794656589141 27.59596272347531 22.01868126568662 64-65 22.19640679764958 27.990629431505266 27.566857036099968 22.24610673474519 66-67 22.10463565036233 28.059508119314934 27.617607244702818 22.218248985619915 68-69 22.144682154355355 28.09563625807349 27.617589901172057 22.142091686399095 70-71 22.215669958706563 27.71365838087411 27.675596975139527 22.39507468527979 72-73 22.111591622148733 27.904363083706762 27.651729513596724 22.33231578054778 74-75 22.039458848790826 28.051463550514576 27.65203757760462 22.257040023089978 76-77 22.29225419942792 27.774901476368402 27.51805366690317 22.41479065730051 78-79 22.072969752528696 27.881841037087128 27.675876332295868 22.36931287808831 80-81 22.120399364319823 28.011308155479924 27.54461147020103 22.323681009999223 82-83 22.225907444085465 27.75894413447479 27.65284597005663 22.362302451383112 84-85 22.181634884763568 27.800801180997105 27.74498368316513 22.2725802510742 86-87 22.126746397330376 27.902327822598593 27.706000685338815 22.264925094732217 88-89 22.17373092539454 27.748313226234643 27.655086624567836 22.422869223802973 90-91 22.192081040889384 27.71627547561173 27.78158232789472 22.310061155604156 92-93 22.15574206045623 27.7822264263291 27.767249923685412 22.29478158952926 94-95 22.124253244193714 27.62546747346097 27.84270972133294 22.407569561012377 96-97 22.002427213232103 27.79029572970073 27.937650960100314 22.269626096966853 98-99 22.44261237277815 28.914193476506895 27.983656765827646 20.659537384887305 100-101 26.551623540380735 35.79181950406886 28.749143465811443 8.90741348973896 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1631.0 1 1504.5 2 2188.0 3 3184.0 4 4184.5 5 6504.0 6 8375.5 7 9634.5 8 10467.5 9 10311.0 10 9714.5 11 9114.5 12 10131.0 13 13261.0 14 20399.0 15 31179.5 16 40716.5 17 46135.0 18 47234.0 19 45564.0 20 42984.5 21 40675.0 22 40606.0 23 44883.0 24 53885.5 25 67705.0 26 85536.0 27 104676.5 28 126270.0 29 150357.0 30 173977.5 31 197168.5 32 220206.0 33 242986.0 34 265495.0 35 286563.0 36 308001.5 37 326600.5 38 342338.0 39 356392.5 40 368313.0 41 379790.0 42 387313.0 43 394444.5 44 400580.5 45 404782.0 46 408250.5 47 408609.0 48 404757.5 49 396485.0 50 386890.0 51 374297.5 52 355364.0 53 333590.5 54 312451.5 55 289197.0 56 263960.5 57 237794.5 58 210939.0 59 182525.5 60 152566.5 61 124610.0 62 99510.5 63 77409.5 64 57913.5 65 42931.0 66 32235.0 67 24223.5 68 18345.0 69 13367.0 70 9553.5 71 6941.0 72 4921.0 73 3384.5 74 2295.0 75 1540.0 76 1059.5 77 708.0 78 476.0 79 324.5 80 223.0 81 157.5 82 125.0 83 100.5 84 73.5 85 49.0 86 32.5 87 28.0 88 22.0 89 14.5 90 9.0 91 5.5 92 4.5 93 3.5 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0012770019399787804 2 0.0026923457567885954 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 2.1283365666313007E-5 18-19 6.651051770722815E-4 20-21 0.0017932092389971184 22-23 0.002032897821340212 24-25 8.676509234866558E-4 26-27 0.007173019732673749 28-29 1.65186084255347E-4 30-31 1.6008703611979762E-5 32-33 4.2802658130675237E-5 34-35 0.0015732629069978787 36-37 0.03589947262325112 38-39 0.016536372022242726 40-41 0.021471307649241076 42-43 0.002001703659938196 44-45 0.0052883233541126656 46-47 0.004082421089143646 48-49 0.0020948478615313553 50-51 0.002081352877063883 52-53 3.3173763650203497E-4 54-55 0.0038081480852449243 56-57 0.014494664894040436 58-59 0.007725138375189546 60-61 0.003183670250503205 62-63 0.0015665257407823782 64-65 0.0024470502424132437 66-67 2.702827226420928E-4 68-69 4.2007412016907596E-4 70-71 2.1263309946054984E-4 72-73 3.9136630281341495E-5 74-75 9.046266038138266E-4 76-77 0.004673632049963333 78-79 1.964597146483615E-4 80-81 6.869242930432772E-5 82-83 5.155104197543593E-4 84-85 0.002253275195536961 86-87 0.01820883534827246 88-89 0.06410041816644275 90-91 0.00256069722012634 92-93 0.0014848149035017288 94-95 0.0026610428934734543 96-97 0.01376969439573438 98-99 3.365990169962308E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 248.0 20-21 928.0 22-23 1780.0 24-25 3567.0 26-27 5174.0 28-29 10230.0 30-31 22930.0 32-33 30576.0 34-35 44154.0 36-37 67250.0 38-39 72945.0 40-41 74692.0 42-43 85174.0 44-45 97473.0 46-47 97565.0 48-49 89339.0 50-51 81979.0 52-53 81227.0 54-55 89354.0 56-57 93522.0 58-59 93728.0 60-61 91921.0 62-63 88086.0 64-65 92756.0 66-67 100676.0 68-69 95873.0 70-71 95263.0 72-73 92841.0 74-75 94355.0 76-77 95738.0 78-79 101304.0 80-81 102105.0 82-83 99019.0 84-85 100065.0 86-87 105085.0 88-89 112219.0 90-91 121597.0 92-93 126370.0 94-95 159540.0 96-97 262399.0 98-99 1126457.0 100-101 4989506.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.80743122881871 #Duplication Level Percentage of deduplicated Percentage of total 1 90.31036802555874 77.49300693602441 2 6.794390794352783 11.660184416562908 3 1.6385517074919864 4.217997388664464 4 0.5774501772158592 1.981980654780761 5 0.25934014525472215 1.1126655839408215 6 0.13014186342815925 0.6700283397661255 7 0.08411958511784542 0.5052659860497398 8 0.05486906489628114 0.37665388101417885 9 0.03293025110495908 0.2543094231332857 >10 0.11504310214277137 1.5382884015059153 >50 0.0024239055743662708 0.1342902517086991 >100 3.7137786150724623E-4 0.05532873684868897 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0641682833156504E-5 2 0.0 9.577514549840854E-5 0.0 0.0 1.0641682833156504E-5 3 0.0 9.577514549840854E-5 0.0 0.0 1.0641682833156504E-5 4 1.0641682833156504E-5 9.577514549840854E-5 0.0 0.0 1.0641682833156504E-5 5 1.0641682833156504E-5 1.2770019399787805E-4 0.0 0.0 1.0641682833156504E-5 6 1.0641682833156504E-5 1.2770019399787805E-4 0.0 0.0 1.0641682833156504E-5 7 1.0641682833156504E-5 1.2770019399787805E-4 0.0 0.0 1.0641682833156504E-5 8 2.1283365666313007E-5 1.3834187683103456E-4 0.0 0.0 1.0641682833156504E-5 9 2.1283365666313007E-5 2.4475870516259957E-4 0.0 0.0 1.0641682833156504E-5 10-11 3.192504849946951E-5 2.4475870516259957E-4 0.0 0.0 1.0641682833156504E-5 12-13 3.192504849946951E-5 2.6072122941233434E-4 0.0 0.0 1.0641682833156504E-5 14-15 3.192504849946951E-5 3.884214234102124E-4 0.0 1.0641682833156504E-5 1.5962524249734756E-5 16-17 3.192504849946951E-5 4.2566731332626014E-4 0.0 1.0641682833156504E-5 2.1283365666313007E-5 18-19 4.2566731332626015E-5 4.2566731332626014E-4 0.0 2.1283365666313007E-5 2.660420708289126E-5 20-21 4.2566731332626015E-5 4.3098815474283843E-4 0.0 4.788757274920427E-5 3.192504849946951E-5 22-23 4.2566731332626015E-5 4.6823404465888617E-4 0.0 6.917093841551728E-5 3.192504849946951E-5 24-25 4.788757274920426E-5 5.161216174080905E-4 0.0 8.513346266525204E-5 3.192504849946951E-5 26-27 6.385009699893903E-5 5.533675073241382E-4 0.0 1.5962524249734755E-4 3.192504849946951E-5 28-29 8.513346266525203E-5 5.746508729904512E-4 0.0 4.522715204091514E-4 3.192504849946951E-5 30-31 8.513346266525203E-5 6.278592871562337E-4 0.0 0.0016920275704718842 3.192504849946951E-5 32-33 9.577514549840854E-5 6.278592871562337E-4 0.0 0.004166218829180771 3.192504849946951E-5 34-35 9.577514549840854E-5 7.129927498214858E-4 0.0 0.007747145102537935 3.192504849946951E-5 36-37 1.0641682833156503E-4 7.981262124867378E-4 0.0 0.013307424382862209 3.192504849946951E-5 38-39 1.1705851116472154E-4 8.619763094856769E-4 0.0 0.02101200275406752 3.192504849946951E-5 40-41 1.1705851116472154E-4 9.630722964006637E-4 0.0 0.028376047274611817 3.192504849946951E-5 42-43 1.1705851116472154E-4 0.001074809966148807 0.0 0.03589971703765347 3.192504849946951E-5 44-45 1.2770019399787805E-4 0.001159943428814059 0.0 0.044578009388092595 3.192504849946951E-5 46-47 1.2770019399787805E-4 0.001159943428814059 0.0 0.05384691513577192 3.192504849946951E-5 48-49 1.2770019399787805E-4 0.001159943428814059 0.0 0.06296683732378704 4.2566731332626015E-5 50-51 1.3834187683103456E-4 0.0012503977328958893 0.0 0.07225170559571609 4.2566731332626015E-5 52-53 1.5962524249734755E-4 0.0012557185743124674 0.0 0.08113218991998519 4.2566731332626015E-5 54-55 1.7026692533050406E-4 0.001266360257145624 0.0 0.09039577482624793 4.2566731332626015E-5 56-57 1.7026692533050406E-4 0.0012770019399787804 0.0 0.09993072264475615 4.2566731332626015E-5 58-59 1.7026692533050406E-4 0.0012823227813953588 0.0 0.10834829376578295 4.2566731332626015E-5 60-61 1.7026692533050406E-4 0.0013621354026440325 0.0 0.11687760255655788 4.2566731332626015E-5 62-63 1.862294495802388E-4 0.0013993812925600802 0.0 0.12510362338658787 4.2566731332626015E-5 64-65 1.9155029099681708E-4 0.0015324023279745366 0.0 0.13311148971853815 4.788757274920426E-5 66-67 1.9155029099681708E-4 0.0015324023279745366 0.0 0.14109807268482208 5.852925558236077E-5 68-69 2.0219197382997359E-4 0.001606894107806632 0.0 0.14910061817535578 6.385009699893903E-5 70-71 2.0219197382997359E-4 0.0016601025219724146 0.0 0.15655511699998192 6.385009699893903E-5 72-73 2.0219197382997359E-4 0.0016813858876387278 0.0 0.162988014272625 6.385009699893903E-5 74-75 2.0219197382997359E-4 0.0017133109361381971 0.0 0.1685482935529493 6.385009699893903E-5 76-77 2.0219197382997359E-4 0.0017505568260542449 0.0 0.17376803898261256 6.385009699893903E-5 78-79 2.1283365666313007E-4 0.001755877667470823 0.0 0.1781311289442067 6.385009699893903E-5 80-81 2.1283365666313007E-4 0.0017611985088874012 0.0 0.18047762000891773 7.449177983209553E-5 82-83 2.1283365666313007E-4 0.0017665193503039796 0.0 0.18196213476414308 8.513346266525203E-5 84-85 2.2347533949628658E-4 0.001771840191720558 0.0 0.18320721165562237 9.045430408183028E-5 86-87 2.2347533949628658E-4 0.0018197277644697622 0.0 0.18341472447086893 1.0109598691498679E-4 88-89 2.2347533949628658E-4 0.0018835778614687013 0.0 0.18348389540928445 1.0641682833156503E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10490 0.0 45.61345 1 GTATCAA 17465 0.0 32.094074 1 ATCAACG 20215 0.0 26.964714 3 TCAACGC 21195 0.0 25.71794 4 CAACGCA 21505 0.0 25.327843 5 AACGCAG 21835 0.0 25.002268 6 ACGCAGA 22435 0.0 24.370731 7 TATCAAC 22955 0.0 24.055386 2 CGCAGAG 26345 0.0 20.753742 8 GTACATG 25235 0.0 19.901802 1 TACATGG 25710 0.0 19.031887 2 ACATGGG 25060 0.0 19.009682 3 GCAGAGT 31620 0.0 17.212488 9 GAGTACT 17085 0.0 17.122494 12-13 AGAGTAC 28080 0.0 17.054173 10-11 CTTATAC 6775 0.0 16.964779 1 CAGAGTA 30820 0.0 16.375702 10-11 CATGGGG 19430 0.0 16.202383 4 GTACTTT 19495 0.0 14.985464 14-15 AGTACTT 18910 0.0 14.787344 12-13 >>END_MODULE