##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139802_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9853745 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.861887840612884 31.0 31.0 34.0 30.0 34.0 2 32.02343261369155 31.0 31.0 34.0 30.0 34.0 3 32.0483745012683 33.0 31.0 34.0 30.0 34.0 4 35.75599642572443 37.0 35.0 37.0 35.0 37.0 5 35.569310957407566 37.0 35.0 37.0 33.0 37.0 6 35.573923213965855 37.0 35.0 37.0 33.0 37.0 7 35.46827201231613 37.0 35.0 37.0 33.0 37.0 8 35.44977721668259 37.0 35.0 37.0 33.0 37.0 9 36.99233306727544 39.0 37.0 39.0 33.0 39.0 10-11 36.88756335789083 39.0 37.0 39.0 33.0 39.0 12-13 36.829925373550864 39.0 37.0 39.0 32.0 39.0 14-15 37.95349742661293 40.0 37.0 41.0 33.0 41.0 16-17 37.9356414743836 40.0 37.0 41.0 33.0 41.0 18-19 37.97571354850364 40.0 37.0 41.0 33.0 41.0 20-21 37.955680466252595 40.0 37.0 41.0 33.0 41.0 22-23 37.88822185578166 40.0 37.0 41.0 32.5 41.0 24-25 37.801004002595164 40.0 37.0 41.0 32.0 41.0 26-27 37.612615747868034 39.0 37.0 41.0 32.0 41.0 28-29 37.50773820859001 39.0 36.0 41.0 32.0 41.0 30-31 37.35912395456453 39.0 36.0 41.0 31.5 41.0 32-33 37.52808163799827 39.0 36.0 41.0 32.0 41.0 34-35 37.488864752499715 39.0 36.0 41.0 32.0 41.0 36-37 37.402976983960926 39.0 36.0 41.0 31.5 41.0 38-39 37.30011201673166 39.0 36.0 41.0 31.0 41.0 40-41 37.21317551977165 39.0 36.0 41.0 31.0 41.0 42-43 37.16967399500011 39.0 36.0 40.5 31.0 41.0 44-45 37.19761272111768 39.0 36.0 40.5 31.0 41.0 46-47 37.304151764157716 39.0 36.0 41.0 31.0 41.0 48-49 37.25121799489959 39.0 36.0 41.0 31.0 41.0 50-51 37.14469930409259 39.0 36.0 41.0 31.0 41.0 52-53 37.056229448132086 39.0 35.5 41.0 31.0 41.0 54-55 36.94568937210394 39.0 35.0 40.0 31.0 41.0 56-57 36.832091692284074 39.0 35.0 40.0 31.0 41.0 58-59 36.70592940959165 39.0 35.0 40.0 30.0 41.0 60-61 36.50334357272156 38.0 35.0 40.0 30.0 41.0 62-63 36.30413453167328 38.0 34.5 40.0 30.0 41.0 64-65 36.13673129571927 38.0 34.0 40.0 29.0 41.0 66-67 35.895779021428766 37.5 34.0 40.0 29.0 41.0 68-69 35.62859206052424 37.0 34.0 39.5 29.0 41.0 70-71 35.337368840537266 36.5 34.0 39.0 29.0 41.0 72-73 35.03819997948992 36.0 34.0 39.0 29.0 40.0 74-75 34.67086875685019 35.5 33.0 38.5 28.0 40.0 76-77 33.57561650847158 35.0 31.5 37.0 27.0 39.0 78-79 33.94125308824765 35.0 32.5 37.0 28.0 39.0 80-81 33.79688379228102 35.0 33.0 37.0 28.0 39.0 82-83 33.53887694686322 35.0 32.5 36.0 28.0 38.5 84-85 33.31625379856959 35.0 32.0 36.0 28.0 37.0 86-87 33.10312200206247 35.0 32.0 35.0 28.0 37.0 88-89 32.87907292101606 34.0 32.0 35.0 27.0 36.5 90-91 32.76376933992982 34.0 32.0 35.0 27.0 36.0 92-93 32.70177982248897 34.0 32.0 35.0 27.0 36.0 94-95 32.64558022710604 34.0 32.0 35.0 27.0 35.5 96-97 32.632345021479 34.0 32.0 35.0 27.5 35.0 98-99 32.74615621667293 34.0 32.0 35.0 29.0 35.0 100-101 32.12578696461183 33.5 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.0 17 2.0 18 1.0 19 10.0 20 82.0 21 528.0 22 2272.0 23 7640.0 24 20288.0 25 42380.0 26 75838.0 27 118220.0 28 169260.0 29 224620.0 30 284548.0 31 349029.0 32 428399.0 33 530388.0 34 678274.0 35 883356.0 36 1229627.0 37 1818425.0 38 2068094.0 39 888774.0 40 33688.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.65149189470603 22.615990164145714 15.610399903792924 24.122118037355342 2 13.46028468095281 23.162753179754635 41.65425793411247 21.722704205180086 3 16.41530199939211 28.451030547269085 32.05208781026909 23.081579643069716 4 11.668741174040937 19.916468307227355 40.420469577810266 27.994320940921448 5 12.005965651834028 38.96681697503172 36.73447744679357 12.29273992634068 6 27.55171764643798 40.42976553584449 19.632535650151286 12.38598116756624 7 24.244376122986743 33.721168956574374 25.210962938456394 16.823491981982485 8 23.156911407794702 37.87055581405851 22.363649556589905 16.60888322155688 9 25.089953109198582 16.729893050814688 22.267533815823324 35.9126200241634 10-11 23.06678323825104 27.678309109886644 30.303255259802235 18.951652392060076 12-13 23.993146768056206 25.42863652347407 30.13883046496535 20.439386243504373 14-15 21.238473291119263 26.69563196530862 27.790124465368244 24.275770278203872 16-17 20.643430492670554 29.632642208622208 28.48343447085347 21.240492827853775 18-19 20.69394430103246 28.94471179180737 30.093092428261603 20.268251478898563 20-21 21.630653703657657 28.168233252969987 29.78664216015869 20.414470883213667 22-23 21.286609012641534 28.05658810861244 29.679453114179626 20.977349764566398 24-25 21.044740552354654 28.249367801398765 29.731869206115324 20.974022440131254 26-27 21.038891315610368 28.380197275525443 29.602929673611605 20.977981735252587 28-29 20.977509314328987 28.496485318999444 29.609422745877502 20.91658262079407 30-31 21.293483248928343 28.30840108094967 29.489338238118794 20.90877743200319 32-33 21.10384085171609 28.49885569422713 29.405051799833004 20.99225165422377 34-35 21.199853067056278 28.529986677547402 29.461805880819075 20.80835437457724 36-37 21.175912276511813 28.43992686964184 29.453153952580564 20.931006901265782 38-39 20.999609119089406 28.561436438881564 29.496891535238294 20.94206290679074 40-41 21.16755065289825 28.32201119203528 29.44316344468001 21.067274710386457 42-43 21.17651917182193 28.41749233369855 29.212493809533168 21.19349468494635 44-45 21.11281812600528 28.543196714681436 29.054760171479415 21.289224987833872 46-47 21.159815918545267 28.431437745407617 28.875225457522173 21.533520878524946 48-49 21.08304004288297 28.72662774369965 28.88359997013461 21.30673224328277 50-51 21.09184446460829 28.797171020319283 28.7392498640693 21.371734651003127 52-53 21.163064767089278 28.657881382438983 28.4332294191541 21.745824431317644 54-55 21.133873633815586 28.349798492981805 28.68522337149712 21.831104501705482 56-57 21.144997203854516 28.11938056736495 28.89851808720606 21.837104141574475 58-59 20.973112222684527 27.910539661111304 29.072007605390677 22.044340510813498 60-61 21.120291160853206 27.642124184410715 29.35409190820515 21.883492746530926 62-63 20.82394525916721 28.229816899300026 29.33410579692632 21.612132044606447 64-65 20.38622297185709 28.45457965381334 29.131251996328494 22.027945378001075 66-67 20.544066061289527 29.14207586567507 28.517684022683753 21.79617405035165 68-69 20.596573611943427 29.485116512096653 28.07673245118683 21.84157742477309 70-71 20.609108990455148 29.013463689357096 28.039618187051442 22.337809133136314 72-73 20.539383228629575 28.57998158358449 28.010391682181506 22.870243505604428 74-75 20.95369046168761 28.22804977466814 28.075882436790895 22.742377326853358 76-77 21.376192998275123 28.04473430662257 27.98478697375357 22.59428572134873 78-79 21.641149740737713 27.950012733743847 27.234483567826327 23.174353957692112 80-81 21.555812739258094 28.367016222005386 27.129864921215457 22.94730611752106 82-83 21.470597796474706 28.443754595318616 27.315551665530613 22.770095942676065 84-85 21.49770298844089 28.499997466882114 27.21398944288579 22.788310101791204 86-87 21.771468247809963 28.84435085541208 27.183943029608976 22.20023786716898 88-89 21.97891657491051 28.472049379579346 27.590079376005423 21.958954669504724 90-91 21.71712928133428 28.452111010854512 27.898080290672215 21.93267941713899 92-93 21.471453441506604 27.894220754189043 27.75667184552647 22.877653958777884 94-95 21.273019457578506 27.890676979918027 28.510228595109915 22.32607496739355 96-97 20.735846987547166 28.21876004718667 28.874897361825415 22.170495603440756 98-99 20.937167669020994 28.3021913413104 29.239395123663826 21.521245866004776 100-101 21.543647234087953 31.386462156566836 26.660249531826963 20.409641077518245 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2815.0 1 2418.0 2 3040.5 3 4260.0 4 5553.0 5 8344.0 6 10653.5 7 12617.5 8 14106.5 9 14143.0 10 13227.5 11 12321.0 12 13467.5 13 17644.5 14 27513.0 15 40906.5 16 51600.0 17 57483.0 18 58814.0 19 56958.5 20 53949.0 21 51791.0 22 52134.0 23 57300.5 24 68058.0 25 84745.5 26 106846.5 27 130674.0 28 156655.5 29 184511.0 30 209995.0 31 235172.0 32 261550.0 33 287642.5 34 312627.0 35 335127.5 36 359103.5 37 380186.0 38 393000.0 39 402645.5 40 411613.0 41 417326.5 42 417998.0 43 419542.0 44 420163.0 45 417227.0 46 411290.0 47 402809.0 48 392946.5 49 378635.5 50 361536.5 51 341475.5 52 317018.0 53 291642.0 54 267576.0 55 244296.5 56 219639.5 57 193110.5 58 168346.0 59 145048.0 60 120835.0 61 96466.5 62 74329.0 63 56284.0 64 41776.0 65 31313.0 66 23801.0 67 17873.5 68 13724.5 69 9886.0 70 6758.5 71 4817.0 72 3378.0 73 2383.5 74 1641.0 75 1069.5 76 712.0 77 487.5 78 345.5 79 254.0 80 185.5 81 135.0 82 101.5 83 71.0 84 50.5 85 37.0 86 30.5 87 26.0 88 20.5 89 15.5 90 10.5 91 8.5 92 7.5 93 4.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00475961170093198 3 0.0 4 0.0 5 2.0296851603121453E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 4.4145652236789163E-4 20-21 7.104265756373414E-4 22-23 2.2330603467810763E-4 24-25 1.3199343078848307E-4 26-27 0.002209396436065781 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.034293826313732685 38-39 0.017226685088785578 40-41 0.021556373276160844 42-43 0.010795702081280027 44-45 0.004455189938271753 46-47 0.005174958371079694 48-49 0.008804851473161712 50-51 0.006927494975649444 52-53 0.010693415581774226 54-55 0.003947059866063102 56-57 0.01585597304695035 58-59 0.012511681499528634 60-61 0.012431842188378686 62-63 0.004886369368381808 64-65 0.0063616230415706404 66-67 5.078770577389267E-4 68-69 8.656142123559877E-4 70-71 0.001108847231152132 72-73 1.1422324705189799E-4 74-75 0.0040890747965517706 76-77 0.005123071440149765 78-79 0.0041952805915282925 80-81 7.709080455786321E-4 82-83 0.00338020113880401 84-85 0.004487036051492489 86-87 0.0014983534166203782 88-89 0.07321724587244671 90-91 9.929887356885498E-4 92-93 7.092708652948517E-6 94-95 5.300063070750542E-4 96-97 0.012353898715657619 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 305.0 20-21 1035.0 22-23 2134.0 24-25 4604.0 26-27 5294.0 28-29 8411.0 30-31 23424.0 32-33 30755.0 34-35 44850.0 36-37 65574.0 38-39 51069.0 40-41 78177.0 42-43 86426.0 44-45 101050.0 46-47 104185.0 48-49 94038.0 50-51 86473.0 52-53 17008.0 54-55 16648.0 56-57 16452.0 58-59 17299.0 60-61 102128.0 62-63 99625.0 64-65 105125.0 66-67 113863.0 68-69 116425.0 70-71 116257.0 72-73 112144.0 74-75 114000.0 76-77 114987.0 78-79 123925.0 80-81 127863.0 82-83 122089.0 84-85 123370.0 86-87 130980.0 88-89 138507.0 90-91 150025.0 92-93 156919.0 94-95 183986.0 96-97 244407.0 98-99 892043.0 100-101 5609866.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.0221667399646 #Duplication Level Percentage of deduplicated Percentage of total 1 90.64914742604014 77.97836074718458 2 6.601206189905656 11.357001191059016 3 1.496790573578367 3.8627150488549664 4 0.5604552713565316 1.9284630721169465 5 0.2543313896875444 1.0939068605454427 6 0.14134895907468348 0.7295486235625713 7 0.08319754254094704 0.500978301376885 8 0.05522007965560098 0.3800120719622588 9 0.03457499507442759 0.2676794392193279 >10 0.1203478597538718 1.607405873275558 >50 0.002736050176966263 0.15533304380082852 >100 5.885243249298697E-4 0.09331444379199408 >500 1.8379880345265736E-5 0.010561595239896596 >1k 3.675894992095192E-5 0.03471968800969956 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0148425801560726E-5 2 0.0 3.044527740468218E-5 0.0 0.0 1.0148425801560726E-5 3 0.0 3.044527740468218E-5 0.0 0.0 1.0148425801560726E-5 4 0.0 5.074212900780363E-5 0.0 1.0148425801560726E-5 1.0148425801560726E-5 5 0.0 7.103898061092508E-5 0.0 3.044527740468218E-5 1.0148425801560726E-5 6 0.0 7.103898061092508E-5 0.0 3.044527740468218E-5 3.044527740468218E-5 7 0.0 7.103898061092508E-5 0.0 3.044527740468218E-5 3.044527740468218E-5 8 0.0 7.103898061092508E-5 0.0 3.044527740468218E-5 3.044527740468218E-5 9 0.0 1.2178110961872872E-4 0.0 5.074212900780363E-5 4.0593703206242906E-5 10-11 0.0 1.2178110961872872E-4 0.0 6.089055480936436E-5 4.0593703206242906E-5 12-13 0.0 1.2178110961872872E-4 0.0 6.089055480936436E-5 4.566791610702327E-5 14-15 0.0 1.8774587732887346E-4 0.0 6.089055480936436E-5 6.596476771014472E-5 16-17 0.0 1.928200902296538E-4 0.0 7.103898061092508E-5 7.103898061092508E-5 18-19 0.0 2.0296851603121454E-4 0.0 1.1163268381716799E-4 8.118740641248581E-5 20-21 0.0 2.1311694183277525E-4 0.0 1.8267166442809308E-4 8.118740641248581E-5 22-23 0.0 2.5371064503901817E-4 0.0 3.856401804593076E-4 9.133583221404654E-5 24-25 0.0 2.993785611460414E-4 0.0 0.001131549476874021 1.1163268381716799E-4 26-27 0.0 3.0952698694760217E-4 0.0 0.0034859842628361098 1.1670689671794835E-4 28-29 0.0 3.196754127491629E-4 0.0 0.014918185928294268 1.2178110961872872E-4 30-31 0.0 3.450464772530647E-4 0.0 0.02778131563177249 1.2178110961872872E-4 32-33 0.0 3.450464772530647E-4 0.0 0.05128506978818713 1.2178110961872872E-4 34-35 0.0 4.414565223678916E-4 0.0 0.08266907657951367 1.3192953542028943E-4 36-37 0.0 5.226439287803774E-4 0.0 0.12216167558628724 1.3192953542028943E-4 38-39 0.0 5.581634190858399E-4 0.0 0.19933030538135502 1.4207796122185016E-4 40-41 0.0 6.697961029030079E-4 0.0 0.5344769932649972 1.4207796122185016E-4 42-43 0.0 6.799445287045687E-4 0.0 0.600370721994531 1.4715217412263054E-4 44-45 0.0 7.509835093154937E-4 0.0 0.7043362701186199 1.522263870234109E-4 46-47 0.0 8.118740641248581E-4 0.0 0.8213983617396229 1.5730059992419125E-4 48-49 0.0 8.169482770256384E-4 0.0 0.9174379893126928 1.7252323862653235E-4 50-51 0.0 8.829130447357831E-4 0.0 1.0089057510621595 1.7252323862653235E-4 52-53 0.0 8.930614705373439E-4 0.0 1.2601249575668947 1.7252323862653235E-4 54-55 0.0 9.285809608428065E-4 0.0 2.048723607115873 1.7252323862653235E-4 56-57 0.0 9.539520253467082E-4 0.0 2.9115529171903676 1.7252323862653235E-4 58-59 0.0 9.7932308985061E-4 0.0 3.8102315414088754 1.7252323862653235E-4 60-61 0.0 9.945457285529511E-4 0.0 4.49580844643331 1.8267166442809308E-4 62-63 0.0 9.945457285529511E-4 0.0 4.5144764756952815 1.8267166442809308E-4 64-65 0.0 0.0011112526252708994 0.0 4.525279474961042 1.8774587732887346E-4 66-67 0.0 0.0011264752639732407 0.0 4.533920859531072 1.9789430313043416E-4 68-69 0.0 0.0011366236897748013 0.0 4.541313987727508 2.0296851603121452E-4 70-71 0.0 0.0011518463284771424 0.0 4.548225065698372 2.0296851603121452E-4 72-73 0.0 0.0011670689671794835 0.0 4.554055336321368 2.0296851603121452E-4 74-75 0.0 0.0012076626703857265 0.0 4.559378185654287 2.0296851603121452E-4 76-77 0.0 0.0012431821606911889 0.0 4.564766999754916 2.1311694183277525E-4 78-79 0.0 0.0012584047993935302 0.0 4.569120674423785 2.2326536763433598E-4 80-81 0.0 0.0012584047993935302 0.0 4.571607038745167 2.2326536763433598E-4 82-83 0.0 0.0012634790122943106 0.0 4.573058263634791 2.334137934358967E-4 84-85 0.0 0.0013091469284013339 0.0 4.574585601717925 2.334137934358967E-4 86-87 0.0 0.0013497406316075767 0.0 4.575123468285408 2.334137934358967E-4 88-89 0.0 0.0014004827606153803 0.0 4.575174210414416 2.334137934358967E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11640 0.0 50.468113 1 TATCTCG 11785 0.0 37.700336 94-95 GTATCAA 21260 0.0 36.60348 1 CCGTCTT 4395 0.0 31.992533 92-93 TATGCCG 4325 0.0 30.205563 88-89 TGCCGTC 4525 0.0 29.554043 90-91 TCAACGC 26270 0.0 28.929316 4 ATCAACG 26380 0.0 28.776623 3 GCCGTCT 4615 0.0 28.572409 90-91 CAACGCA 26755 0.0 28.357481 5 ATGCCGT 4560 0.0 28.05068 88-89 AACGCAG 27430 0.0 27.70591 6 TATCAAC 27970 0.0 27.47453 2 CGTATGC 5370 0.0 25.04772 86-87 TCGTATG 5305 0.0 24.703224 84-85 CTCGTAT 5435 0.0 24.539112 84-85 CTATCTC 20060 0.0 24.31843 94-95 ATCTCGT 9460 0.0 24.316017 94-95 ACGCAGA 31880 0.0 23.85182 7 CGCAGAG 32305 0.0 23.498756 8 >>END_MODULE