##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139801_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11147786 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.826267386187716 31.0 31.0 34.0 30.0 34.0 2 31.985682986738354 31.0 31.0 34.0 30.0 34.0 3 32.0097978199438 31.0 31.0 34.0 30.0 34.0 4 35.72735303673752 37.0 35.0 37.0 35.0 37.0 5 35.544292561769666 37.0 35.0 37.0 33.0 37.0 6 35.550750615413676 37.0 35.0 37.0 33.0 37.0 7 35.442619189137645 37.0 35.0 37.0 33.0 37.0 8 35.42386918801635 37.0 35.0 37.0 33.0 37.0 9 36.96043456521322 39.0 37.0 39.0 33.0 39.0 10-11 36.85008023117774 39.0 37.0 39.0 33.0 39.0 12-13 36.793604487922536 39.0 37.0 39.0 32.0 39.0 14-15 37.90235612703724 40.0 37.0 41.0 33.0 41.0 16-17 37.891876198556375 40.0 37.0 41.0 33.0 41.0 18-19 37.935260239118335 40.0 37.0 41.0 33.0 41.0 20-21 37.918971860744236 40.0 37.0 41.0 32.5 41.0 22-23 37.851686029397555 40.0 37.0 41.0 32.0 41.0 24-25 37.76458744114052 39.5 37.0 41.0 32.0 41.0 26-27 37.57662161882605 39.0 36.5 41.0 32.0 41.0 28-29 37.47497809372006 39.0 36.0 41.0 32.0 41.0 30-31 37.32803946981308 39.0 36.0 40.5 31.5 41.0 32-33 37.48441478645954 39.0 36.0 41.0 32.0 41.0 34-35 37.440367145964835 39.0 36.0 41.0 31.5 41.0 36-37 37.353870269325334 39.0 36.0 41.0 31.0 41.0 38-39 37.25024296230279 39.0 36.0 41.0 31.0 41.0 40-41 37.16425565883925 39.0 36.0 41.0 31.0 41.0 42-43 37.12618042213943 39.0 36.0 40.0 31.0 41.0 44-45 37.15605500687124 39.0 36.0 40.5 31.0 41.0 46-47 37.27018251937208 39.0 36.0 41.0 31.0 41.0 48-49 37.22393026244868 39.0 36.0 41.0 31.0 41.0 50-51 37.125035369733666 39.0 36.0 41.0 31.0 41.0 52-53 37.039787627686735 39.0 35.5 40.5 31.0 41.0 54-55 36.929026276390964 39.0 35.0 40.0 31.0 41.0 56-57 36.81666005769283 39.0 35.0 40.0 30.5 41.0 58-59 36.691540798968155 38.5 35.0 40.0 30.0 41.0 60-61 36.49154284876085 38.0 35.0 40.0 30.0 41.0 62-63 36.29345285365575 38.0 34.5 40.0 30.0 41.0 64-65 36.108978681645546 38.0 34.0 40.0 29.0 41.0 66-67 35.871699116531424 37.5 34.0 40.0 29.0 41.0 68-69 35.609816106940414 37.0 34.0 40.0 29.0 41.0 70-71 35.3299264720539 36.5 34.0 39.0 29.0 41.0 72-73 35.03453501712641 36.0 34.0 39.0 29.0 40.0 74-75 34.68715896979563 36.0 33.0 38.5 28.0 40.0 76-77 33.62334138219849 35.0 31.5 37.0 27.0 39.0 78-79 34.03565236936264 35.0 33.0 37.0 28.0 39.0 80-81 33.92037857482139 35.0 33.0 37.0 29.0 39.0 82-83 33.667152118174386 35.0 33.0 36.0 28.0 38.5 84-85 33.417958552816046 35.0 32.0 36.0 28.0 37.0 86-87 33.188884341046354 35.0 32.0 35.5 28.0 37.0 88-89 32.96012447405286 34.0 32.0 35.0 28.0 36.5 90-91 32.81819973713094 34.0 32.0 35.0 27.0 36.0 92-93 32.7268642277002 34.0 32.0 35.0 27.5 36.0 94-95 32.674040471510146 34.0 32.0 35.0 28.0 36.0 96-97 32.67479535565438 34.0 32.0 35.0 28.5 35.0 98-99 32.78183991453513 34.0 32.0 35.0 29.0 35.0 100-101 32.15164618433994 33.5 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 12.0 20 111.0 21 660.0 22 2734.0 23 9034.0 24 22677.0 25 47580.0 26 83868.0 27 131150.0 28 187208.0 29 249509.0 30 317658.0 31 392872.0 32 485626.0 33 603764.0 34 773464.0 35 1005919.0 36 1387985.0 37 2027394.0 38 2301320.0 39 1080872.0 40 36366.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.19613921544601 23.12198135127459 15.773266548173781 23.908612885105615 2 13.195497446346726 23.53707329706586 42.02258417528881 21.2448450812986 3 16.140119661428738 29.095212269055036 32.32449026201257 22.440177807503662 4 11.408049993065887 20.337769311323342 41.01757963419821 27.236601061412554 5 11.671252331405057 39.32076545437192 36.99739786849117 12.01058434573185 6 26.831955690573896 41.12072119073689 19.92909623489364 12.11822688379558 7 23.673498935124876 34.05539898236295 25.695272585964602 16.575829496547563 8 22.77753627491593 38.26025185628787 22.630134808831098 16.33207705996509 9 24.900011535922918 16.844133893492394 22.5534828171262 35.702371753458486 10-11 22.7929653475587 27.892668553199712 30.634952985283352 18.679413113958233 12-13 23.764090914554693 25.66223015045319 30.482335236790515 20.091343698201598 14-15 21.006215942789 26.891842021366397 28.159649817461514 23.942292218383095 16-17 20.31522671856098 29.906359881684132 28.805562826555875 20.97285057319902 18-19 20.370902947960488 29.175301076693476 30.463893985337474 19.98990199000856 20-21 21.328975460253137 28.39219619740632 30.148429454944708 20.130398887395838 22-23 20.99422791259968 28.311934155972462 30.02382647553748 20.670011455890382 24-25 20.773902229526577 28.476235209563704 30.099656634499343 20.65020592641037 26-27 20.724120940681676 28.62529439068503 29.965341662014396 20.685243006618904 28-29 20.66077810543924 28.73312007707525 29.952328020527162 20.65377379695835 30-31 21.012544780696334 28.54634120797583 29.837483743358277 20.603630267969557 32-33 20.82741502181248 28.72163253243048 29.744570268222258 20.706382177534778 34-35 20.898212000911474 28.792829245403528 29.809984074505714 20.498974679179284 36-37 20.899849603910845 28.729194009134456 29.73732661257068 20.63362977438402 38-39 20.740932520363007 28.807125348699834 29.7725895173931 20.679352613544058 40-41 20.970082329440785 28.67879308120048 29.645476043247353 20.705648546111377 42-43 20.835741575383675 28.801353885449092 29.409798786535323 20.95310575263191 44-45 20.953560735857547 28.946657103119268 29.215491607779704 20.884290553243485 46-47 20.97676353853832 28.920228385147524 29.014642912015603 21.08836516429855 48-49 20.922098929910064 29.0376480761 29.022918014970976 21.017334979018955 50-51 20.98060710251038 29.119811240947936 28.80346038736395 21.096121269177736 52-53 21.0453679306415 29.00916303743411 28.769835417686203 21.175633614238183 54-55 21.05055549511495 28.962264945506522 28.782115951304355 21.20506360807417 56-57 21.083252052567214 29.044338294589316 28.733602232335855 21.138807420507614 58-59 21.02651644347108 29.119506875381468 28.75179411879902 21.102182562348435 60-61 21.163504392995467 29.078452965668745 28.717598383974362 21.040444257361425 62-63 21.11202145752891 29.132179201158486 28.67520189548887 21.08059744582374 64-65 21.0351840899189 29.073705182440385 28.683079645826933 21.208031081813786 66-67 21.167109528107414 29.110550659134997 28.52671610301762 21.19562370973997 68-69 21.07368437030897 29.07942108119273 28.66775705013144 21.179137498366867 70-71 21.105686489742904 28.845755759018555 28.721002903900832 21.32755484733771 72-73 21.169245060575435 28.90038623242094 28.677208296768637 21.253160410234987 74-75 20.992427548975158 29.022112799998872 28.663482875469125 21.321976775556845 76-77 21.085388971695664 28.96757305474049 28.6301388619704 21.316899111593447 78-79 21.10789221672034 28.929404483998166 28.627647667555255 21.335055631726238 80-81 21.132504889978943 28.924998392105117 28.621249478135496 21.321247239780448 82-83 21.123110646446012 28.871171747812348 28.76968949829195 21.23602810744969 84-85 21.240613026212316 28.837999705640655 28.67184465048243 21.2495426176646 86-87 21.019465161642927 28.89758681205132 28.738046573670463 21.344901452635295 88-89 21.129384222909152 28.8181126478437 28.71338433408705 21.339118795160097 90-91 21.132783143171277 28.785540462429793 28.826866188637233 21.2548102057617 92-93 21.152732621800176 28.698964833909564 28.826072848176693 21.322229696113563 94-95 20.959896033981106 28.74360893038822 28.912306121688307 21.384188913942364 96-97 20.890997901621837 28.781006373059814 29.019377592565565 21.308618132752784 98-99 21.025250587971982 29.41309408844336 29.05355719235736 20.5080981312273 100-101 21.466055282404174 32.19120963214949 26.458632889712952 19.884102195733387 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2671.0 1 2395.0 2 3448.0 3 5021.5 4 6621.0 5 10016.0 6 12785.5 7 14952.0 8 16402.5 9 16313.0 10 15318.5 11 14395.0 12 15873.0 13 20724.5 14 32283.0 15 48380.5 16 61398.5 17 68387.5 18 70223.0 19 69074.5 20 66915.0 21 66201.5 22 68873.5 23 77053.5 24 92554.5 25 115269.0 26 144068.5 27 176555.0 28 210161.5 29 244224.0 30 276502.5 31 309081.5 32 342639.0 33 372177.5 34 398082.0 35 422657.0 36 448657.5 37 470077.0 38 480860.5 39 484217.0 40 486900.0 41 488072.5 42 483181.5 43 478223.5 44 473013.5 45 465039.5 46 455644.0 47 442919.5 48 426704.0 49 406661.5 50 386561.0 51 365577.5 52 338720.5 53 309550.5 54 281788.5 55 255765.5 56 231541.0 57 205278.5 58 178799.0 59 154360.0 60 128781.0 61 103614.0 62 80481.0 63 60741.5 64 44676.0 65 33326.5 66 25440.0 67 19408.5 68 14937.5 69 10530.0 70 7047.0 71 5158.0 72 3677.0 73 2523.5 74 1727.0 75 1218.5 76 841.5 77 568.5 78 439.0 79 327.5 80 220.5 81 154.0 82 118.0 83 79.5 84 54.5 85 43.0 86 33.0 87 30.5 88 26.0 89 18.5 90 13.0 91 10.5 92 9.0 93 4.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003794475423191654 3 0.0 4 0.0 5 1.794078214275014E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 4.036675982118781E-4 20-21 6.862674518822231E-4 22-23 2.3327129662639015E-4 24-25 1.4808532407126942E-4 26-27 0.0021012231004157458 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03331416623723454 38-39 0.016207438338491365 40-41 0.021316657326179076 42-43 0.010759519421819075 44-45 0.004431737406546327 46-47 0.005267506299536746 48-49 0.008675065082298223 50-51 0.006823773891567499 52-53 0.010731426617903116 54-55 0.0037625144719761945 56-57 0.016041042491375987 58-59 0.012809122052984076 60-61 0.01280970308687523 62-63 0.004867168597780216 64-65 0.006503662312101087 66-67 4.493772033191642E-4 68-69 6.125915316105633E-4 70-71 9.729044997492709E-4 72-73 1.1146344706729082E-4 74-75 0.0034972454813215455 76-77 0.004296588583139189 78-79 0.003638853656466638 80-81 6.968972422063412E-4 82-83 0.003223365159612399 84-85 0.0044341018662628524 86-87 0.0013145511260556559 88-89 0.07292622325486153 90-91 8.55984198402978E-4 92-93 1.3147969749677119E-5 94-95 4.776837906886511E-4 96-97 0.01183273003709457 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 321.0 20-21 1150.0 22-23 2384.0 24-25 5853.0 26-27 6978.0 28-29 10671.0 30-31 27739.0 32-33 35708.0 34-35 50281.0 36-37 78168.0 38-39 92211.0 40-41 95131.0 42-43 106402.0 44-45 123427.0 46-47 124638.0 48-49 116092.0 50-51 106631.0 52-53 103832.0 54-55 109999.0 56-57 115536.0 58-59 117005.0 60-61 115833.0 62-63 109821.0 64-65 115179.0 66-67 122496.0 68-69 125881.0 70-71 126504.0 72-73 121953.0 74-75 121732.0 76-77 123675.0 78-79 133937.0 80-81 137268.0 82-83 132919.0 84-85 132798.0 86-87 140151.0 88-89 149236.0 90-91 161470.0 92-93 168836.0 94-95 196520.0 96-97 263364.0 98-99 880097.0 100-101 6137959.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.14878618950453 #Duplication Level Percentage of deduplicated Percentage of total 1 90.68454038841563 78.12363080615106 2 6.547360999609745 11.28094405721761 3 1.5591347845292145 4.029527075790796 4 0.5504002113612312 1.896652405088672 5 0.24475628950316985 1.0542728626472524 6 0.1334887865421359 0.6899938158308926 7 0.08134912995343302 0.4905690162142364 8 0.04349535170780402 0.2997657403610327 9 0.03391580344986541 0.2629624769862943 >10 0.1184215558690861 1.5920169036565655 >50 0.002371417130856521 0.13655273470832288 >100 6.830598766961414E-4 0.09568317099155664 >500 8.222205112981127E-5 0.04742893435576398 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.279273749962549E-5 0.0 8.970391071375069E-6 0.0 3 0.0 6.279273749962549E-5 0.0 2.691117321412521E-5 0.0 4 0.0 1.0764469285650084E-4 0.0 3.5881564285500275E-5 0.0 5 0.0 1.0764469285650084E-4 0.0 3.5881564285500275E-5 0.0 6 2.691117321412521E-5 1.0764469285650084E-4 0.0 3.5881564285500275E-5 0.0 7 2.691117321412521E-5 1.0764469285650084E-4 0.0 4.485195535687535E-5 0.0 8 2.691117321412521E-5 1.166150839278759E-4 0.0 5.382234642825042E-5 8.970391071375069E-6 9 2.691117321412521E-5 2.063189946416266E-4 0.0 7.176312857100055E-5 8.970391071375069E-6 10-11 2.691117321412521E-5 2.197745812486892E-4 0.0 7.624832410668808E-5 8.970391071375069E-6 12-13 2.691117321412521E-5 2.2425977678437674E-4 0.0 9.867430178512576E-5 8.970391071375069E-6 14-15 3.1396368749812744E-5 2.825673187483147E-4 0.0 1.0764469285650083E-4 2.2425977678437675E-5 16-17 3.5881564285500275E-5 2.870525142840022E-4 0.0 1.166150839278759E-4 2.691117321412521E-5 18-19 3.5881564285500275E-5 2.960229053553773E-4 0.0 1.300706705349385E-4 3.5881564285500275E-5 20-21 3.5881564285500275E-5 3.1844888303381494E-4 0.0 1.4801145267768866E-4 4.036675982118781E-5 22-23 3.5881564285500275E-5 3.633008383906903E-4 0.0 1.5698184374906372E-4 5.382234642825042E-5 24-25 3.5881564285500275E-5 4.126379892832532E-4 0.0 2.60141341069877E-4 7.176312857100055E-5 26-27 3.5881564285500275E-5 4.350639669616909E-4 0.0 5.471938553538792E-4 8.073351964237563E-5 28-29 3.5881564285500275E-5 4.395491624973784E-4 0.0 0.002112527097308829 8.073351964237563E-5 30-31 4.485195535687535E-5 4.933715089256288E-4 0.0 0.006467651962461425 8.073351964237563E-5 32-33 5.382234642825042E-5 4.933715089256288E-4 0.0 0.01783313744989364 8.97039107137507E-5 34-35 5.382234642825042E-5 5.382234642825042E-4 0.0 0.031261812883742114 9.867430178512576E-5 36-37 5.382234642825042E-5 5.830754196393795E-4 0.0 0.0474937355273953 9.867430178512576E-5 38-39 5.382234642825042E-5 6.144717883891923E-4 0.0 0.07111726041386154 1.031594973208133E-4 40-41 5.382234642825042E-5 6.996905035672554E-4 0.0 0.09345353418158547 1.1212988839218837E-4 42-43 5.382234642825042E-5 7.310868723170681E-4 0.0 0.11195048057076087 1.2110027946356345E-4 44-45 5.382234642825042E-5 8.028500008880687E-4 0.0 0.13071205349654183 1.300706705349385E-4 46-47 5.382234642825042E-5 8.477019562449441E-4 0.0 0.14808770100179536 1.3455586607062604E-4 48-49 5.382234642825042E-5 8.521871517806316E-4 0.0 0.16067315967493456 1.435262571420011E-4 50-51 6.279273749962549E-5 9.104946937445696E-4 0.0 0.1718906337096891 1.524966482133762E-4 52-53 6.279273749962549E-5 9.149798892802571E-4 0.0 0.1817446083015946 1.7492262589181384E-4 54-55 6.279273749962549E-5 9.149798892802571E-4 0.0 0.1919170317765339 1.9734860357025153E-4 56-57 6.279273749962549E-5 9.508614535657573E-4 0.0 0.20094124519433723 2.0183379910593906E-4 58-59 6.279273749962549E-5 9.598318446371324E-4 0.0 0.20964252453357107 2.1528938571300165E-4 60-61 6.279273749962549E-5 9.777726267798826E-4 0.0 0.2181599108558417 2.332301678557518E-4 62-63 6.279273749962549E-5 9.867430178512576E-4 0.0 0.22580716924418892 2.4220055892712686E-4 64-65 6.279273749962549E-5 0.0011212988839218838 0.0 0.2334095756771793 2.466857544628144E-4 66-67 6.727793303531302E-5 0.0011302692749932588 0.0 0.24148292764141688 2.60141341069877E-4 68-69 8.073351964237563E-5 0.0011526952526716965 0.0 0.24951142765029757 2.691117321412521E-4 70-71 8.073351964237563E-5 0.0011796064258858215 0.0 0.2571317748654307 2.691117321412521E-4 72-73 8.073351964237563E-5 0.0011930620124928843 0.0 0.2634200190064646 3.049932964267524E-4 74-75 8.073351964237563E-5 0.001215487990171322 0.0 0.2691341581189305 3.049932964267524E-4 76-77 8.073351964237563E-5 0.0012558547499925098 0.0 0.27425176622515 3.049932964267524E-4 78-79 8.073351964237563E-5 0.0012648251410638848 0.0 0.27870556539208774 3.049932964267524E-4 80-81 8.073351964237563E-5 0.0012648251410638848 0.0 0.2807149329920757 3.049932964267524E-4 82-83 8.073351964237563E-5 0.0012693103365995723 0.0 0.28215468075903144 3.049932964267524E-4 84-85 8.073351964237563E-5 0.0012827659232066348 0.0 0.2833836243358098 3.049932964267524E-4 86-87 8.073351964237563E-5 0.0013186474874921352 0.0 0.28382765869384285 3.049932964267524E-4 88-89 8.073351964237563E-5 0.0013904106160631357 0.0 0.2838680254536641 3.1844888303381494E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13065 0.0 48.201283 1 GTATCAA 23830 0.0 35.577835 1 TCAACGC 29755 0.0 27.865112 4 ATCAACG 29795 0.0 27.81379 3 CAACGCA 30410 0.0 27.18313 5 AACGCAG 31390 0.0 26.387299 6 TATCAAC 31865 0.0 26.229307 2 ACGCAGA 36355 0.0 22.783587 7 CGCAGAG 36610 0.0 22.590921 8 GTACATG 33810 0.0 20.183426 1 TACATGG 33280 0.0 20.168507 2 ACATGGG 33350 0.0 19.578321 3 GCAGAGT 43180 0.0 18.96161 9 AGAGTAC 39935 0.0 18.016136 10-11 GAGTACT 25430 0.0 17.622763 12-13 CATGGGG 23195 0.0 17.461876 4 CAGAGTA 42960 0.0 16.766844 10-11 AGTACTT 28125 0.0 15.749858 12-13 GTACTTT 29250 0.0 15.336843 14-15 ATGGGGG 14700 0.0 15.172449 5 >>END_MODULE