##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139800_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9568447 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.39437988212716 31.0 31.0 34.0 30.0 34.0 2 31.601035779369422 31.0 31.0 34.0 30.0 34.0 3 31.60781545845423 31.0 31.0 34.0 30.0 34.0 4 35.39825083422629 37.0 35.0 37.0 33.0 37.0 5 35.16054151734341 37.0 35.0 37.0 32.0 37.0 6 35.17370530452852 37.0 35.0 37.0 32.0 37.0 7 35.05818352758812 37.0 35.0 37.0 32.0 37.0 8 35.03884538420916 37.0 35.0 37.0 32.0 37.0 9 36.523057503479926 38.0 35.0 39.0 32.0 39.0 10-11 36.35852124174383 38.0 35.0 39.0 32.0 39.0 12-13 36.29798262978308 38.0 35.0 39.0 32.0 39.0 14-15 37.298889098722086 39.0 36.0 40.0 32.0 41.0 16-17 37.26401144302727 39.0 36.0 40.0 32.0 41.0 18-19 37.28220169897999 39.0 36.0 40.0 32.0 41.0 20-21 37.252222390342126 39.0 36.0 40.0 31.0 41.0 22-23 37.16800716615804 39.0 36.0 40.0 31.0 41.0 24-25 37.06769884091854 39.0 36.0 40.0 31.0 41.0 26-27 36.83426397884574 39.0 36.0 40.0 30.5 41.0 28-29 36.69741972090702 38.5 35.5 40.0 30.0 41.0 30-31 36.53050057917077 38.0 35.0 40.0 30.0 41.0 32-33 36.72079460783489 38.0 35.0 40.0 30.0 41.0 34-35 36.66348943765038 38.0 35.0 40.0 30.0 41.0 36-37 36.55182313891389 38.0 35.0 40.0 30.0 41.0 38-39 36.41562170346551 38.0 35.0 40.0 30.0 41.0 40-41 36.30582806028793 38.0 35.0 40.0 30.0 41.0 42-43 36.2330921971134 38.0 35.0 40.0 30.0 41.0 44-45 36.26558543808887 38.0 35.0 40.0 30.0 41.0 46-47 36.38999708663276 38.0 35.0 40.0 30.0 41.0 48-49 36.328426106521604 38.0 35.0 40.0 30.0 41.0 50-51 36.20942230826356 38.0 35.0 40.0 29.0 41.0 52-53 36.09187575393853 38.0 34.0 40.0 29.0 41.0 54-55 35.9462500256047 38.0 34.0 40.0 28.5 41.0 56-57 35.798621994028224 38.0 34.0 40.0 28.0 41.0 58-59 35.64195388977216 38.0 34.0 40.0 28.0 41.0 60-61 35.416644263317 37.5 34.0 40.0 28.0 41.0 62-63 35.18872742305493 37.0 33.0 40.0 28.0 41.0 64-65 34.9784094093881 37.0 33.0 39.0 28.0 40.5 66-67 34.71620169056376 36.0 33.0 39.0 27.0 40.0 68-69 34.4326932434132 36.0 32.0 39.0 26.5 40.0 70-71 34.14268725142183 35.5 32.0 38.5 26.0 40.0 72-73 33.83826532518137 35.0 32.0 38.0 26.0 40.0 74-75 33.48541089287521 35.0 31.0 37.0 26.0 39.5 76-77 32.536871968211045 34.0 30.5 36.0 26.0 39.0 78-79 32.98462241291339 34.0 31.0 36.0 26.0 39.0 80-81 32.89732451348637 34.0 31.0 36.0 26.0 38.5 82-83 32.67746250200306 34.0 31.0 36.0 26.0 37.0 84-85 32.456400910579205 34.0 31.0 35.0 26.0 37.0 86-87 32.24035272122848 34.0 31.0 35.0 26.0 36.5 88-89 32.03355215566045 34.0 31.0 35.0 26.0 36.0 90-91 31.914738312059374 34.0 31.0 35.0 26.0 36.0 92-93 31.843883512882933 34.0 31.0 35.0 26.0 35.5 94-95 31.823367196899316 34.0 31.0 35.0 26.0 35.0 96-97 31.86105613941428 34.0 31.0 35.0 26.0 35.0 98-99 32.047374258975736 34.0 31.0 35.0 26.5 35.0 100-101 31.445348621555038 33.0 30.0 34.5 25.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 6.0 19 21.0 20 157.0 21 1005.0 22 4326.0 23 13818.0 24 33975.0 25 67020.0 26 115120.0 27 171570.0 28 235394.0 29 299946.0 30 368105.0 31 442439.0 32 530871.0 33 646778.0 34 809439.0 35 1036508.0 36 1374191.0 37 1686547.0 38 1319490.0 39 407661.0 40 4059.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.58357453409106 24.571730396792706 17.00235158328201 23.84234348583422 2 14.160224968826618 24.798231318780147 39.48677601641009 21.554767695983145 3 16.83628492690611 28.69412350823493 32.38355189718875 22.086039667670207 4 12.657560835107306 21.226673461221033 38.809443162511116 27.306322541160544 5 12.219025720683826 38.94849394055274 36.573427223874475 12.259053114888967 6 28.05039313067209 40.94914253065309 18.783831900829885 12.216632437844929 7 24.180538388308992 33.557002510438735 25.170197420751766 17.092261680500503 8 23.212011311762502 38.31067883847818 21.838214707151536 16.639095142607783 9 24.925904903899244 16.312448613656947 21.84964811949107 36.91199836295274 10-11 23.22576484982359 27.6564838578298 30.16876719910765 18.948984093238955 12-13 24.102741019519677 25.279253780681444 30.045163023842846 20.572842175956037 14-15 21.31176563971144 26.594420181247802 27.468579801926058 24.625234377114698 16-17 20.93909805844146 29.47071243640687 28.212284605850872 21.377904899300795 18-19 20.99907900082694 28.73262936772427 29.7969647525125 20.471326878936292 20-21 21.746950369672273 28.003823031817454 29.567897486140755 20.68132911236952 22-23 21.467033601990998 27.957456952759035 29.41496959601834 21.160539849231625 24-25 21.31650850913654 28.115117768541033 29.411403027213552 21.156970695108882 26-27 21.36310045493318 28.200087109298945 29.309255483329494 21.127556952438386 28-29 21.351052015105815 28.219416741592568 29.34818105810113 21.08135018520049 30-31 21.555713568188928 28.113473101842963 29.2759106013713 21.05490272859681 32-33 21.446237236858693 28.235960544560694 29.18688285222068 21.130919366359933 34-35 21.53956575820885 28.238644646122594 29.206812509018544 21.01497708665001 36-37 21.50401049138788 28.2128605038373 29.153776154366017 21.129352850408797 38-39 21.388244436744568 28.28371997000775 29.218397895962926 21.10963769728476 40-41 21.568373135516257 28.193028148576115 29.068123246927712 21.170475468979916 42-43 21.47678715291354 28.352584375627966 28.827028059540073 21.343600411918423 44-45 21.581327988215296 28.384845666687795 28.644052085709237 21.389774259387668 46-47 21.637738413532038 28.37796930991432 28.458994754115537 21.525297522438112 48-49 21.552625321201578 28.508301489879624 28.422536590402615 21.516536598516183 50-51 21.607748087323593 28.554346270836987 28.261326202703458 21.576579439135966 52-53 21.694780509711844 28.46259432617806 28.178366897617362 21.664258266492734 54-55 21.675251205650785 28.37491662226224 28.26152917380841 21.688302998278566 56-57 21.655356301687707 28.417547517035217 28.235453510234088 21.691642671042988 58-59 21.652240779635846 28.440034536294075 28.231152414164768 21.676572269905314 60-61 21.75140231815297 28.417125064556565 28.205354261326853 21.626118355963616 62-63 21.68361566013697 28.490715401549505 28.197741088569277 21.62792784974425 64-65 21.622501053898198 28.448757961902043 28.191773791458985 21.73696719274077 66-67 21.706512740133675 28.560322386553715 27.96302352817118 21.77014134514143 68-69 21.687575638034183 28.50533235622618 27.99403357387335 21.81305843186628 70-71 21.693648806041974 28.37249143401251 28.07546179909826 21.858397960847253 72-73 21.73532394349775 28.374337637523723 27.96795832511397 21.92238009386456 74-75 21.7002938947947 28.432468758052025 27.939107019237586 21.92813032791569 76-77 21.847824591303244 28.36262856887221 27.9213496078821 21.86819723194245 78-79 21.81046849357609 28.369471258340063 27.84493087427922 21.97512937380463 80-81 21.811669377969846 28.389414546350828 27.86828957512399 21.930626500555334 82-83 21.81398387112351 28.34233700966802 27.981934244612095 21.861744874596372 84-85 21.847983610059675 28.395186981029237 27.933463877203103 21.823365531707985 86-87 21.804343218407165 28.36740846999896 27.972694287955157 21.855554023638714 88-89 21.765696686123356 28.35885428894102 28.019032840617708 21.856416184317915 90-91 21.832318777329412 28.31936515181046 28.11447826396452 21.733837806895608 92-93 21.867521104345734 28.278807011008205 28.10833104039942 21.745340844246634 94-95 21.685618255362893 28.31240446563977 28.208540768879953 21.793436510117388 96-97 21.520443284257556 28.385145416993808 28.33597833642678 21.758432962321855 98-99 21.629154328716407 28.999530670969165 28.41573950336798 20.955575496946448 100-101 22.17239308916753 31.743355362900488 25.713571565923814 20.37067998200817 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2508.0 1 2278.5 2 3092.5 3 4317.5 4 5413.5 5 7805.0 6 9919.0 7 11912.5 8 13471.0 9 13642.5 10 12975.0 11 12314.5 12 13696.5 13 18212.0 14 28815.0 15 43688.0 16 54992.0 17 59632.0 18 60238.5 19 58985.5 20 56510.5 21 54803.0 22 56049.0 23 62482.0 24 74882.5 25 92960.0 26 115438.5 27 138135.0 28 160670.0 29 183598.0 30 204525.5 31 225811.0 32 248497.0 33 269996.5 34 290620.0 35 310066.0 36 330875.0 37 350123.5 38 363277.0 39 373618.0 40 382703.5 41 388883.0 42 392940.0 43 396630.5 44 399568.5 45 400919.5 46 398045.5 47 391723.0 48 384752.0 49 374365.0 50 360544.0 51 344448.5 52 324657.5 53 303570.5 54 281416.5 55 256572.5 56 231405.5 57 206421.5 58 180320.5 59 153123.0 60 126410.5 61 102468.5 62 81234.5 63 62234.5 64 45651.5 65 33452.5 66 24929.0 67 18811.0 68 14228.5 69 10202.0 70 7206.0 71 5133.5 72 3497.0 73 2376.5 74 1665.5 75 1173.5 76 833.0 77 562.5 78 392.5 79 290.5 80 212.0 81 146.5 82 112.5 83 80.5 84 52.5 85 33.5 86 25.0 87 20.0 88 14.0 89 9.5 90 6.5 91 5.0 92 3.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001964791151583951 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 3.605600783491825E-4 20-21 4.23293053776665E-4 22-23 1.6725415559936337E-4 24-25 1.4639353258469076E-4 26-27 0.0023853526791015383 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.029632690106406758 38-39 0.012783571944036811 40-41 0.019912087810806875 42-43 0.00752557236998521 44-45 0.002755701006222983 46-47 0.003873138005408749 48-49 0.0075350509063260365 50-51 0.00550763483259342 52-53 0.0092548227186664 54-55 0.0024414470547962823 56-57 0.014185485703488692 58-59 0.011187511945605433 60-61 0.010713463797425148 62-63 0.0038549328766495135 64-65 0.005219662185145202 66-67 2.493325337664665E-4 68-69 1.4174648431741549E-4 70-71 5.311437048660637E-4 72-73 7.604160362870531E-5 74-75 0.0011440215842166669 76-77 0.0012912070301136216 78-79 0.0010395483936924705 80-81 1.4138298955273962E-4 82-83 0.002130124147196921 84-85 0.003274870621707013 86-87 9.01165810535494E-4 88-89 0.06720487025384606 90-91 6.289600899664512E-4 92-93 1.5168248487460181E-5 94-95 3.275954470784765E-4 96-97 0.010632210118971685 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 353.0 20-21 1290.0 22-23 2525.0 24-25 4557.0 26-27 5794.0 28-29 8632.0 30-31 19708.0 32-33 26245.0 34-35 37535.0 36-37 55202.0 38-39 59727.0 40-41 66819.0 42-43 77390.0 44-45 90650.0 46-47 92339.0 48-49 84754.0 50-51 78972.0 52-53 71137.0 54-55 78838.0 56-57 84931.0 58-59 89812.0 60-61 91537.0 62-63 91072.0 64-65 100083.0 66-67 107867.0 68-69 111089.0 70-71 111660.0 72-73 110511.0 74-75 112599.0 76-77 112876.0 78-79 123537.0 80-81 127236.0 82-83 124133.0 84-85 127158.0 86-87 137203.0 88-89 146051.0 90-91 161937.0 92-93 174857.0 94-95 210444.0 96-97 281414.0 98-99 817067.0 100-101 5150906.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.86787494945914 #Duplication Level Percentage of deduplicated Percentage of total 1 91.57766074026875 80.4673444208993 2 6.050144845144025 10.6322674135846 3 1.3552104294276046 3.572383816294428 4 0.48490883662300105 1.7043163607311025 5 0.21427788283223972 0.941407110656905 6 0.1043958962905542 0.5503827336297074 7 0.06169679210227258 0.3794816209257686 8 0.042443867863941574 0.29835619790721485 9 0.024764772808952663 0.19584251642959363 >10 0.08279238078295618 1.1305269883561888 >50 0.0014927081026604493 0.08642786427246268 >100 2.108477530386614E-4 0.04126295631272866 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.045101676374442E-5 0.0 2 0.0 5.22550838187221E-5 0.0 2.090203352748884E-5 0.0 3 0.0 5.22550838187221E-5 0.0 2.090203352748884E-5 0.0 4 0.0 1.045101676374442E-4 0.0 6.270610058246652E-5 0.0 5 0.0 1.2541220116493303E-4 0.0 6.270610058246652E-5 0.0 6 7.315711734621093E-5 1.2541220116493303E-4 0.0 9.405915087369978E-5 0.0 7 7.315711734621093E-5 1.2541220116493303E-4 0.0 1.1496118440118861E-4 0.0 8 8.360813410995536E-5 1.2541220116493303E-4 0.0 1.2541220116493303E-4 0.0 9 8.360813410995536E-5 2.090203352748884E-4 0.0 2.090203352748884E-4 0.0 10-11 8.360813410995536E-5 2.090203352748884E-4 0.0 2.6127541909361045E-4 0.0 12-13 8.360813410995536E-5 2.090203352748884E-4 0.0 2.874029610029715E-4 0.0 14-15 9.405915087369978E-5 2.2992236880237723E-4 0.0 3.1353050291233256E-4 1.045101676374442E-5 16-17 9.405915087369978E-5 2.2992236880237723E-4 0.0 3.3443253643982145E-4 2.090203352748884E-5 18-19 9.405915087369978E-5 2.5082440232986606E-4 0.0 3.5010906158543806E-4 2.090203352748884E-5 20-21 9.405915087369978E-5 2.717264358573549E-4 0.0 4.0758965378603234E-4 2.090203352748884E-5 22-23 1.045101676374442E-4 2.769519442392271E-4 0.0 5.016488046597321E-4 2.090203352748884E-5 24-25 1.1496118440118861E-4 3.2920702805794923E-4 0.0 9.98072100937592E-4 2.090203352748884E-5 26-27 1.1496118440118861E-4 3.553345699673103E-4 0.0 0.0020483992856939063 2.090203352748884E-5 28-29 1.1496118440118861E-4 3.553345699673103E-4 0.0 0.009944142450702815 2.090203352748884E-5 30-31 1.1496118440118861E-4 4.023641454041602E-4 0.0 0.018477397638300135 2.090203352748884E-5 32-33 1.2018669278306082E-4 4.0758965378603234E-4 0.0 0.03366272499602078 2.090203352748884E-5 34-35 1.3586321792867745E-4 4.4416821245913784E-4 0.0 0.0533263130370059 2.090203352748884E-5 36-37 1.4108872631054967E-4 4.911977878959877E-4 0.0 0.08054076068979638 2.090203352748884E-5 38-39 1.4631423469242186E-4 5.120998214234766E-4 0.0 0.12832280933363585 2.090203352748884E-5 40-41 1.4631423469242186E-4 5.539038884784542E-4 0.0 0.20396726866961795 2.090203352748884E-5 42-43 1.4631423469242186E-4 5.695804136240708E-4 0.0 0.24629388656278284 2.090203352748884E-5 44-45 1.5153974307429406E-4 6.270610058246651E-4 0.0 0.30614685956874715 2.090203352748884E-5 46-47 1.5676525145616628E-4 6.688650728796429E-4 0.0 0.3716486071355153 2.090203352748884E-5 48-49 1.619907598380385E-4 6.740905812615151E-4 0.0 0.4241127112895123 3.135305029123326E-5 50-51 2.0379482689301617E-4 7.263456650802372E-4 0.0 0.47279877288341565 3.135305029123326E-5 52-53 2.194713520386328E-4 7.367966818439815E-4 0.0 0.5311311229502551 3.135305029123326E-5 54-55 2.194713520386328E-4 7.629242237533427E-4 0.0 0.6385937028234572 3.135305029123326E-5 56-57 2.194713520386328E-4 7.942772740445759E-4 0.0 0.7502784934692119 3.135305029123326E-5 58-59 2.194713520386328E-4 8.204048159539369E-4 0.0 0.8397914520506828 3.135305029123326E-5 60-61 2.194713520386328E-4 8.256303243358091E-4 0.0 0.8971100534914391 3.135305029123326E-5 62-63 2.194713520386328E-4 8.308558327176814E-4 0.0 0.9476354940357614 3.135305029123326E-5 64-65 2.194713520386328E-4 9.405915087369978E-4 0.0 0.9696244333066797 3.135305029123326E-5 66-67 2.194713520386328E-4 9.405915087369978E-4 0.0 0.9792498197460884 3.657855867310547E-5 68-69 2.194713520386328E-4 9.510425255007421E-4 0.0 0.9878980361180869 4.180406705497768E-5 70-71 2.3514787718424945E-4 9.71944559028231E-4 0.0 0.9965148994397941 4.180406705497768E-5 72-73 2.717264358573549E-4 9.876210841738477E-4 0.0 1.0031669716099176 4.180406705497768E-5 74-75 2.717264358573549E-4 0.001018974134465081 0.0 1.0086851084611745 4.180406705497768E-5 76-77 2.717264358573549E-4 0.001066003709901931 0.0 1.0136597924407167 4.180406705497768E-5 78-79 2.717264358573549E-4 0.0010869057434294196 0.0 1.0180544449898714 4.180406705497768E-5 80-81 2.717264358573549E-4 0.0010973567601931641 0.0 1.0205835910466976 4.180406705497768E-5 82-83 2.717264358573549E-4 0.0011078077769569085 0.0 1.021916095684075 4.180406705497768E-5 84-85 2.717264358573549E-4 0.0011182587937206528 0.0 1.023144090153815 4.180406705497768E-5 86-87 2.769519442392271E-4 0.0011287098104843974 0.0 1.0236039348914199 4.180406705497768E-5 88-89 2.8217745262109934E-4 0.0011496118440118862 0.0 1.0236457389584748 5.22550838187221E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9855 0.0 49.912704 1 GTATCAA 17970 0.0 34.245155 1 TCAACGC 22910 0.0 26.257446 4 ATCAACG 23210 0.0 25.90002 3 CAACGCA 23505 0.0 25.503723 5 AACGCAG 24295 0.0 24.70888 6 TATCAAC 24670 0.0 24.46955 2 ACGCAGA 28665 0.0 20.941992 7 CGCAGAG 29055 0.0 20.632078 8 TATACCG 695 0.0 19.876959 5 AGAGTAC 30840 0.0 18.385923 10-11 GTACATG 22335 0.0 17.187521 1 GCAGAGT 34280 0.0 17.08432 9 CAGAGTA 33510 0.0 16.964699 9 GAGTACT 21335 0.0 16.89413 12-13 TACATGG 22625 0.0 16.726679 2 ACATGGG 22815 0.0 16.091625 3 AGTACTT 23815 0.0 15.987386 12-13 GTACTTT 24065 0.0 14.996145 14-15 TATACTG 5575 0.0 14.942698 5 >>END_MODULE