Basic Statistics
Measure | Value |
---|---|
Filename | SRR2139798_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8703956 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-101 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9865 | 0.0 | 49.987423 | 1 |
GTATCAA | 18675 | 0.0 | 37.080307 | 1 |
TCAACGC | 23765 | 0.0 | 28.307774 | 4 |
ATCAACG | 23985 | 0.0 | 28.118113 | 3 |
CAACGCA | 24415 | 0.0 | 27.605703 | 5 |
TATCAAC | 25065 | 0.0 | 27.09136 | 2 |
GACCGAG | 6860 | 0.0 | 26.788153 | 90-91 |
AACGCAG | 25215 | 0.0 | 26.779785 | 6 |
AGACCGA | 6880 | 0.0 | 26.481596 | 90-91 |
ACCGAGG | 7135 | 0.0 | 26.379417 | 92-93 |
GAGACCG | 7060 | 0.0 | 25.997429 | 88-89 |
CGAGACC | 7235 | 0.0 | 25.664574 | 88-89 |
ACGAGAC | 7745 | 0.0 | 24.141262 | 86-87 |
CACGAGA | 7820 | 0.0 | 23.489588 | 86-87 |
ACGCAGA | 29030 | 0.0 | 23.188217 | 7 |
CCCACGA | 7930 | 0.0 | 22.917883 | 84-85 |
CGCAGAG | 29435 | 0.0 | 22.869167 | 8 |
GCCCACG | 7955 | 0.0 | 22.732924 | 82-83 |
CCACGAG | 8130 | 0.0 | 22.641611 | 84-85 |
ATCTCCG | 8205 | 0.0 | 21.512884 | 74-75 |