##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139797_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9052839 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.81760826631292 31.0 31.0 34.0 30.0 34.0 2 31.990171149624995 31.0 31.0 34.0 30.0 34.0 3 32.014249783962796 31.0 31.0 34.0 30.0 34.0 4 35.73145186830341 37.0 35.0 37.0 35.0 37.0 5 35.5373293394481 37.0 35.0 37.0 33.0 37.0 6 35.54043477410788 37.0 35.0 37.0 33.0 37.0 7 35.431088965572016 37.0 35.0 37.0 33.0 37.0 8 35.41271064248464 37.0 35.0 37.0 33.0 37.0 9 36.957262025757885 39.0 37.0 39.0 33.0 39.0 10-11 36.84031081299469 39.0 37.0 39.0 32.5 39.0 12-13 36.782623826625 39.0 37.0 39.0 32.0 39.0 14-15 37.90104220344579 40.0 37.0 41.0 33.0 41.0 16-17 37.877838598477226 40.0 37.0 41.0 33.0 41.0 18-19 37.905410059761365 40.0 37.0 41.0 33.0 41.0 20-21 37.87879123421117 40.0 37.0 41.0 32.0 41.0 22-23 37.805493310412444 40.0 37.0 41.0 32.0 41.0 24-25 37.71819184929513 39.0 37.0 41.0 32.0 41.0 26-27 37.52314303895761 39.0 36.0 41.0 32.0 41.0 28-29 37.41228526691806 39.0 36.0 41.0 32.0 41.0 30-31 37.260566707878795 39.0 36.0 40.0 31.0 41.0 32-33 37.44531731307862 39.0 36.0 41.0 32.0 41.0 34-35 37.4025787945916 39.0 36.0 41.0 31.5 41.0 36-37 37.31003190468193 39.0 36.0 41.0 31.0 41.0 38-39 37.202218403220726 39.0 36.0 41.0 31.0 41.0 40-41 37.105640752427476 39.0 36.0 40.0 31.0 41.0 42-43 37.0564403483137 39.0 36.0 40.0 31.0 41.0 44-45 37.07555987793925 39.0 35.5 40.0 31.0 41.0 46-47 37.18113830275095 39.0 36.0 41.0 31.0 41.0 48-49 37.11786844257601 39.0 36.0 41.0 31.0 41.0 50-51 36.999805551474964 39.0 35.0 40.5 31.0 41.0 52-53 36.89219690707664 39.0 35.0 40.0 30.5 41.0 54-55 36.76388162862594 39.0 35.0 40.0 30.0 41.0 56-57 36.6274896405599 38.5 35.0 40.0 30.0 41.0 58-59 36.48216878290255 38.0 35.0 40.0 30.0 41.0 60-61 36.25820832725422 38.0 34.5 40.0 29.5 41.0 62-63 36.036812334688335 38.0 34.0 40.0 29.0 41.0 64-65 35.84010662295144 37.0 34.0 40.0 29.0 41.0 66-67 35.57834821145393 37.0 34.0 40.0 29.0 41.0 68-69 35.294714434392404 36.5 34.0 39.0 29.0 41.0 70-71 34.990559908362144 36.0 33.5 39.0 28.0 40.0 72-73 34.68519583791881 35.5 33.0 39.0 28.0 40.0 74-75 34.321869373583795 35.0 33.0 38.0 28.0 40.0 76-77 33.257858757368396 34.5 31.5 36.5 26.5 39.0 78-79 33.639543533299204 35.0 32.0 37.0 27.5 39.0 80-81 33.51739652444624 35.0 32.0 36.0 28.0 39.0 82-83 33.28821885344847 35.0 32.0 36.0 27.0 37.5 84-85 33.0871661932736 35.0 32.0 35.5 27.0 37.0 86-87 32.89419505175593 34.0 32.0 35.0 27.0 37.0 88-89 32.68814508855313 34.0 32.0 35.0 27.0 36.0 90-91 32.58812066920021 34.0 32.0 35.0 27.0 36.0 92-93 32.53491941437786 34.0 32.0 35.0 27.0 36.0 94-95 32.4935800323167 34.0 32.0 35.0 27.0 35.0 96-97 32.49684539158197 34.0 32.0 35.0 27.0 35.0 98-99 32.61993114349782 34.0 32.0 35.0 28.5 35.0 100-101 31.9985853877526 33.5 30.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 0.0 14 0.0 15 0.0 16 2.0 17 0.0 18 2.0 19 21.0 20 79.0 21 474.0 22 2252.0 23 7798.0 24 20196.0 25 42499.0 26 75048.0 27 117905.0 28 166293.0 29 218534.0 30 274858.0 31 338407.0 32 413454.0 33 511752.0 34 652868.0 35 855245.0 36 1200638.0 37 1720949.0 38 1744494.0 39 665582.0 40 23485.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.78901845045515 22.28299873663941 15.508295243072368 24.419687569833066 2 13.950137884805983 22.893296469786637 40.53833179931608 22.618233846091304 3 16.655592792493053 27.7338191919684 31.733967653683003 23.876620361855547 4 12.144775799061486 19.5364570164122 39.33535104291593 28.983416141610384 5 12.562806299110314 38.42852967369114 36.26497514479996 12.743688882398596 6 28.694501249828917 39.521944441959036 19.036028366350045 12.747525941861996 7 24.9773689778422 33.13982497645214 24.62889266008155 17.253913385624113 8 23.83397075768165 37.12400054833627 21.814902485286662 17.227126208695413 9 25.317604786741487 16.36080129117507 21.608226988240926 36.71336693384252 10-11 23.53609735023455 27.058406760575327 29.879350555113156 19.526145334076965 12-13 24.46120493250791 24.78306529034704 29.678993517945035 21.076736259200015 14-15 21.75690962801835 26.064851037337565 27.08820956608198 25.090029768562104 16-17 21.35569294891912 29.02965577980565 27.776656582537257 21.837994688737975 18-19 21.388670632507544 28.317348791960594 29.344046693131382 20.94993388240048 20-21 22.1844137318429 27.55487762206186 29.07248413436229 21.188224511732955 22-23 21.940891069801925 27.446762907464212 28.968004989363354 21.64434103337051 24-25 21.750727560285878 27.65328053726713 28.95835535487078 21.637636547576218 26-27 21.7650631558354 27.710506230120156 28.87645671254878 21.64797390149566 28-29 21.718454322620424 27.740083602567346 28.913918824161495 21.627543250650735 30-31 21.94511698204147 27.65119525941887 28.78676936995494 21.616918388584722 32-33 21.76406336396764 27.818168609354082 28.705657535167255 21.712110491511023 34-35 21.89419136788601 27.808923040215788 28.685275664845193 21.611609927053006 36-37 21.86048985848979 27.76395427805448 28.6881451837958 21.68741067965993 38-39 21.71755209716701 27.87526504391513 28.757844399526412 21.649338459391444 40-41 21.886705739500872 27.638829533454984 28.67529412030725 21.799170606736897 42-43 21.83964139331778 27.82161403753304 28.46169517133834 21.87704939781084 44-45 21.835378554707166 27.825483246455274 28.315035344036595 22.02410285480097 46-47 21.898789607663034 27.829092284306157 28.145507745180964 22.126610362849846 48-49 21.790441946709628 28.093305890263743 28.09187172626457 22.024380436762062 50-51 21.840144253340497 28.11637990445236 27.984907115120983 22.058568727086158 52-53 21.928543371489013 27.950700763321656 27.74553796629442 22.375217898894913 54-55 21.871317563716534 27.693689671770123 27.94859034567271 22.486402418840637 56-57 21.843430591294464 27.485956951957718 28.20446859354221 22.46614386320561 58-59 21.742182036734842 27.309945848347393 28.269044510810065 22.678827604107695 60-61 21.85009693625266 27.075375971200543 28.538659358692104 22.535867733854694 62-63 21.56869925869084 27.5628486018395 28.55338698608106 22.3150651533886 64-65 21.24267588850201 27.784142685526238 28.349913851642487 22.62326757432927 66-67 21.317089937526372 28.358155128998835 27.85144956655244 22.473305366922354 68-69 21.378867111143453 28.62792048599697 27.461827607579025 22.531384795280548 70-71 21.39261611710338 28.26852460978734 27.387571826437057 22.951287446672218 72-73 21.325176476403072 27.885549921748385 27.330529172425006 23.458744429423533 74-75 21.67191626323561 27.591913467681195 27.439527066254055 23.29664320282914 76-77 22.12163609944914 27.379256083393617 27.338453407499042 23.160654409658203 78-79 22.28587075919765 27.296646105302198 26.722349389082307 23.695133746417845 80-81 22.229414774900327 27.69096380288959 26.625235025758954 23.45438639645113 82-83 22.107684036269852 27.77770378571094 26.731050346065498 23.38356183195371 84-85 22.11616000665806 27.793226924421717 26.711089219598318 23.37952384932191 86-87 22.4043799457161 28.085472478346183 26.71164396629841 22.798503609639305 88-89 22.57300690897602 27.76612431896817 26.973949937146667 22.68691883490914 90-91 22.300702910713976 27.77746221244478 27.280756640752767 22.641078236088475 92-93 22.126860931399285 27.2871768152254 27.173655453366667 23.412306800008643 94-95 21.890207757210405 27.26655018592632 27.807875828407102 23.035366228456176 96-97 21.5193267166127 27.561936003758085 28.089211381021702 22.829525898607514 98-99 21.70880248181343 27.763536070315826 28.395400217188705 22.132261230682047 100-101 22.356160559370643 30.681855177988815 25.749649825277825 21.212334437362713 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2057.0 1 1827.5 2 2459.5 3 3569.0 4 4801.5 5 7323.5 6 9393.5 7 11065.0 8 12212.5 9 12161.0 10 11511.5 11 10888.5 12 11987.0 13 15622.0 14 24116.0 15 36001.5 16 45587.5 17 50196.5 18 50720.5 19 48886.5 20 46197.5 21 44605.5 22 45185.5 23 49487.5 24 59093.0 25 73549.0 26 90554.0 27 108381.0 28 127198.0 29 146181.0 30 162641.0 31 180378.0 32 200619.0 33 220583.5 34 239944.0 35 257632.5 36 277104.5 37 296009.5 38 311847.0 39 324661.5 40 335443.5 41 347038.5 42 354799.0 43 360781.5 44 367394.5 45 372090.0 46 373604.5 47 371829.5 48 368693.0 49 362689.5 50 354115.0 51 343354.5 52 328170.5 53 310669.5 54 292745.0 55 271850.0 56 247621.0 57 221828.5 58 195382.5 59 168102.5 60 140543.0 61 114317.0 62 90936.5 63 70090.0 64 51659.5 65 37960.5 66 28321.0 67 21412.0 68 16442.0 69 12061.5 70 8632.5 71 6257.0 72 4411.0 73 3015.0 74 2111.0 75 1473.0 76 1023.5 77 716.5 78 518.0 79 386.0 80 273.0 81 192.5 82 137.5 83 94.0 84 71.0 85 53.0 86 42.0 87 39.5 88 33.5 89 22.5 90 14.0 91 9.5 92 6.5 93 3.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003921421777190559 3 0.0 4 0.0 5 5.5231292636486746E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 3.3138775581892046E-4 20-21 7.62227496075495E-4 22-23 2.7067996298202926E-4 24-25 1.3813804720762778E-4 26-27 0.002493080457952899 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03291906495316792 38-39 0.01653015504250185 40-41 0.02118257548920559 42-43 0.009974472864480732 44-45 0.004013172852349686 46-47 0.00495679069890401 48-49 0.008604243601237677 50-51 0.006613654290826708 52-53 0.010551610871333598 54-55 0.0034779629951883807 56-57 0.01590618097725762 58-59 0.012301061118939903 60-61 0.012019934728693931 62-63 0.004474466348648114 64-65 0.005979571797717213 66-67 3.7798445058720816E-4 68-69 5.896768658599302E-4 70-71 9.59392108828358E-4 72-73 1.029710096706511E-4 74-75 0.0029402004942926862 76-77 0.003547071354261274 78-79 0.0028393257056812562 80-81 3.8062082655210885E-4 82-83 0.003036266198566427 84-85 0.004350246850239145 86-87 0.0013805986745541077 88-89 0.07238231123423713 90-91 9.073445558330785E-4 92-93 0.0 94-95 4.546797216774415E-4 96-97 0.011425518582563327 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 248.0 20-21 920.0 22-23 1823.0 24-25 3711.0 26-27 4588.0 28-29 7773.0 30-31 19008.0 32-33 25016.0 34-35 35879.0 36-37 51925.0 38-39 40529.0 40-41 62467.0 42-43 70137.0 44-45 82584.0 46-47 84132.0 48-49 76717.0 50-51 70538.0 52-53 15301.0 54-55 15312.0 56-57 15223.0 58-59 15716.0 60-61 85327.0 62-63 84977.0 64-65 89910.0 66-67 97536.0 68-69 100674.0 70-71 101110.0 72-73 99327.0 74-75 100278.0 76-77 100557.0 78-79 109366.0 80-81 111311.0 82-83 108080.0 84-85 110282.0 86-87 117340.0 88-89 125868.0 90-91 136359.0 92-93 145894.0 94-95 173548.0 96-97 234012.0 98-99 842343.0 100-101 5279193.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.49902813852117 #Duplication Level Percentage of deduplicated Percentage of total 1 90.09821863170384 77.03310130022679 2 6.914250647107788 11.82323421267714 3 1.6577420499611577 4.252060025281164 4 0.6002016811883036 2.0526664171482594 5 0.2831469554545429 1.210439475587228 6 0.15201868297235419 0.7798469791820545 7 0.0836681529862082 0.5007482036526136 8 0.05315072286449522 0.3635468119819374 9 0.03685348756731628 0.28358436334685533 >10 0.11861389379707044 1.5472407033460516 >50 0.0017704074360657984 0.1004248673702406 >100 3.6468696086640237E-4 0.05310664019959776 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1046258527297349E-5 0.0 0.0 0.0 3 0.0 1.1046258527297349E-5 0.0 0.0 0.0 4 0.0 3.3138775581892045E-5 0.0 1.1046258527297349E-5 0.0 5 0.0 3.3138775581892045E-5 0.0 3.3138775581892045E-5 0.0 6 2.2092517054594698E-5 3.3138775581892045E-5 0.0 3.3138775581892045E-5 1.1046258527297349E-5 7 2.2092517054594698E-5 3.3138775581892045E-5 0.0 3.3138775581892045E-5 1.1046258527297349E-5 8 2.2092517054594698E-5 3.3138775581892045E-5 0.0 3.3138775581892045E-5 1.1046258527297349E-5 9 2.2092517054594698E-5 8.837006821837879E-5 0.0 3.3138775581892045E-5 2.2092517054594698E-5 10-11 2.2092517054594698E-5 8.837006821837879E-5 0.0 3.3138775581892045E-5 2.2092517054594698E-5 12-13 3.3138775581892045E-5 8.837006821837879E-5 0.0 3.3138775581892045E-5 2.2092517054594698E-5 14-15 3.3138775581892045E-5 1.3255510232756818E-4 0.0 3.3138775581892045E-5 2.761564631824337E-5 16-17 8.837006821837879E-5 1.491244901185142E-4 0.0 4.418503410918939E-5 3.3138775581892045E-5 18-19 8.837006821837879E-5 1.8226326570040623E-4 0.0 1.2150884380027083E-4 3.866190484554072E-5 20-21 8.837006821837879E-5 2.098789120186496E-4 0.0 1.7674013643675755E-4 4.4185034109189395E-5 22-23 9.389319748202747E-5 2.4301768760054166E-4 0.0 3.700496606644612E-4 5.523129263648674E-5 24-25 1.1598571453662215E-4 2.9272585097337973E-4 0.0 9.665476211385179E-4 6.627755116378409E-5 26-27 1.2150884380027083E-4 3.203414972916231E-4 0.0 0.0028057496659335264 6.627755116378409E-5 28-29 1.2150884380027083E-4 3.258646265552718E-4 0.0 0.016105444932799532 6.627755116378409E-5 30-31 1.3255510232756818E-4 4.197578240372992E-4 0.0 0.029631588499475135 6.627755116378409E-5 32-33 1.4360136085486553E-4 4.3080408256459656E-4 0.0 0.049796533441056445 6.627755116378409E-5 34-35 1.4360136085486553E-4 4.915585044647319E-4 0.0 0.07724648588139035 6.627755116378409E-5 36-37 1.4360136085486553E-4 5.688823141558135E-4 0.0 0.11190964514004945 7.732380969108144E-5 38-39 1.4360136085486553E-4 5.854517019467595E-4 0.0 0.1796121636538549 8.837006821837879E-5 40-41 1.4360136085486553E-4 5.964979604740568E-4 0.0 0.45122309145230577 9.941632674567614E-5 42-43 1.4360136085486553E-4 6.020210897377054E-4 0.0 0.5098400623274091 9.941632674567614E-5 44-45 1.491244901185142E-4 6.351598653195976E-4 0.0 0.6020431822547601 1.049394560093248E-4 46-47 1.5464761938216288E-4 6.627755116378409E-4 0.0 0.7079602321437507 1.2150884380027083E-4 48-49 1.5464761938216288E-4 6.627755116378409E-4 0.0 0.7955791547822733 1.2150884380027083E-4 50-51 1.8778639496405493E-4 7.400993213289224E-4 0.0 0.8795307195897332 1.2150884380027083E-4 52-53 2.098789120186496E-4 7.621918383835171E-4 0.0 1.101085526871736 1.3255510232756818E-4 54-55 2.098789120186496E-4 7.842843554381118E-4 0.0 1.787897697064976 1.4360136085486553E-4 56-57 2.098789120186496E-4 8.063768724927065E-4 0.0 2.553453121170055 1.4360136085486553E-4 58-59 2.1540204128229828E-4 8.063768724927065E-4 0.0 3.3563283297096085 1.4360136085486553E-4 60-61 2.2092517054594696E-4 8.174231310200038E-4 0.0 3.9702959480445856 1.4360136085486553E-4 62-63 2.4301768760054166E-4 8.284693895473012E-4 0.0 3.9887652923022268 1.6569387790946023E-4 64-65 2.4301768760054166E-4 9.499782333475719E-4 0.0 3.998994127698505 1.6569387790946023E-4 66-67 2.4854081686419033E-4 9.499782333475719E-4 0.0 4.006704416150558 1.712170071731089E-4 68-69 2.54063946127839E-4 9.665476211385179E-4 0.0 4.013133338613445 1.7674013643675758E-4 70-71 2.595870753914877E-4 9.886401381931126E-4 0.0 4.01965063114455 2.098789120186496E-4 72-73 2.761564631824337E-4 0.0010052095259840588 0.0 4.024671155645207 2.319714290732443E-4 74-75 2.761564631824337E-4 0.0010438714308295995 0.0 4.029249829804772 2.319714290732443E-4 76-77 2.982489802370284E-4 0.0010935795942024376 0.0 4.033602055664527 2.319714290732443E-4 78-79 3.203414972916231E-4 0.0011156721112570323 0.0 4.037738879482999 2.319714290732443E-4 80-81 3.203414972916231E-4 0.0011156721112570323 0.0 4.040053070644468 2.4301768760054166E-4 82-83 3.203414972916231E-4 0.0011211952405206808 0.0 4.041527746157863 2.54063946127839E-4 84-85 3.258646265552718E-4 0.0011267183697843295 0.0 4.043063176093157 2.595870753914877E-4 86-87 3.3138775581892046E-4 0.0011377646283116268 0.0 4.043471887658667 2.6511020465513636E-4 88-89 3.3138775581892046E-4 0.0012261346965300056 0.0 4.043493980175722 2.6511020465513636E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9650 0.0 50.275616 1 TATCTCG 9150 0.0 36.742268 94-95 GTATCAA 17370 0.0 35.38077 1 CCGTCTT 3625 0.0 31.340357 92-93 TATGCCG 3480 0.0 31.177498 88-89 TGCCGTC 3895 0.0 28.311758 90-91 GCCGTCT 3860 0.0 27.933617 90-91 TCAACGC 21990 0.0 27.499676 4 ATCAACG 22200 0.0 27.220306 3 CAACGCA 22625 0.0 26.746735 5 ATGCCGT 3935 0.0 26.73924 88-89 AACGCAG 23165 0.0 26.104807 6 TATCAAC 23390 0.0 26.019022 2 CGTATGC 4420 0.0 25.389803 86-87 CTCGTAT 4425 0.0 24.912151 84-85 TCGTATG 4395 0.0 24.497381 84-85 CTATCTC 15580 0.0 24.485477 94-95 TCTCGTA 4375 0.0 24.273458 82-83 ATCTCGT 7335 0.0 22.691048 94-95 ACGCAGA 27070 0.0 22.323267 7 >>END_MODULE