##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139796_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12505391 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.307735679756036 31.0 31.0 34.0 30.0 34.0 2 31.526447513716285 31.0 31.0 34.0 30.0 34.0 3 31.52459703179213 31.0 31.0 34.0 30.0 34.0 4 35.32860715830476 37.0 35.0 37.0 33.0 37.0 5 35.07459438893194 35.0 35.0 37.0 32.0 37.0 6 35.101172846174904 36.0 35.0 37.0 32.0 37.0 7 34.99159898319053 36.0 35.0 37.0 32.0 37.0 8 34.971143805099736 36.0 35.0 37.0 32.0 37.0 9 36.447123404618054 38.0 35.0 39.0 32.0 39.0 10-11 36.265949421333566 38.0 35.0 39.0 32.0 39.0 12-13 36.20989579614104 38.0 35.0 39.0 32.0 39.0 14-15 37.18560795100289 39.0 36.0 40.0 32.0 41.0 16-17 37.15041916722156 39.0 36.0 40.0 31.5 41.0 18-19 37.17254798350567 39.0 36.0 40.0 31.0 41.0 20-21 37.14674118286913 39.0 36.0 40.0 31.0 41.0 22-23 37.06075554055735 39.0 36.0 40.0 31.0 41.0 24-25 36.95515644374881 39.0 36.0 40.0 31.0 41.0 26-27 36.71561168563492 38.5 35.5 40.0 30.0 41.0 28-29 36.572848287625995 38.0 35.0 40.0 30.0 41.0 30-31 36.39720377297637 38.0 35.0 40.0 30.0 41.0 32-33 36.58211696151549 38.0 35.0 40.0 30.0 41.0 34-35 36.518542633638916 38.0 35.0 40.0 30.0 41.0 36-37 36.4063748466382 38.0 35.0 40.0 30.0 41.0 38-39 36.26759119059579 38.0 35.0 40.0 30.0 41.0 40-41 36.15574923015292 38.0 35.0 40.0 30.0 41.0 42-43 36.077468244529015 38.0 35.0 40.0 30.0 41.0 44-45 36.110397405834576 38.0 34.5 40.0 29.5 41.0 46-47 36.241784691352564 38.0 35.0 40.0 30.0 41.0 48-49 36.18064783821008 38.0 35.0 40.0 29.5 41.0 50-51 36.07089937012556 38.0 34.0 40.0 29.0 41.0 52-53 35.95429630852799 38.0 34.0 40.0 29.0 41.0 54-55 35.811208051018355 38.0 34.0 40.0 28.0 41.0 56-57 35.67482381555291 38.0 34.0 40.0 28.0 41.0 58-59 35.52223489800778 38.0 34.0 40.0 28.0 41.0 60-61 35.30465123716263 37.0 33.0 40.0 28.0 41.0 62-63 35.078381770340016 37.0 33.0 40.0 28.0 41.0 64-65 34.869873506232935 36.5 33.0 39.0 27.0 40.0 66-67 34.612200426869435 36.0 32.5 39.0 27.0 40.0 68-69 34.33124869976116 36.0 32.0 39.0 26.0 40.0 70-71 34.04491804416624 35.0 32.0 38.5 26.0 40.0 72-73 33.73797916693009 35.0 31.5 38.0 26.0 40.0 74-75 33.3873828904578 35.0 31.0 37.5 26.0 39.5 76-77 32.48128800900682 34.0 30.5 36.0 25.5 39.0 78-79 32.93240142806137 34.0 31.0 36.0 26.0 39.0 80-81 32.8372676286574 34.0 31.0 36.0 26.0 38.5 82-83 32.60858762611559 34.0 31.0 36.0 26.0 37.5 84-85 32.37806151621341 34.0 31.0 35.0 26.0 37.0 86-87 32.147490695500174 34.0 31.0 35.0 26.0 36.5 88-89 31.929799376704537 34.0 31.0 35.0 26.0 36.0 90-91 31.797940457357065 34.0 31.0 35.0 25.0 36.0 92-93 31.717486955953802 34.0 30.5 35.0 25.0 35.5 94-95 31.69426270538053 34.0 31.0 35.0 25.0 35.0 96-97 31.73291584322277 34.0 31.0 35.0 25.5 35.0 98-99 31.928190191453524 34.0 31.0 35.0 26.0 35.0 100-101 31.331931536897525 33.0 30.0 34.5 25.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 2.0 18 7.0 19 42.0 20 270.0 21 1436.0 22 6316.0 23 19583.0 24 47006.0 25 92675.0 26 155503.0 27 232591.0 28 317605.0 29 406377.0 30 499882.0 31 601118.0 32 724735.0 33 885539.0 34 1106868.0 35 1410735.0 36 1840305.0 37 2164365.0 38 1575598.0 39 413834.0 40 2998.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.18780142002768 25.651986863264558 18.006755487033992 23.153456229673765 2 14.132985381079369 25.660870980980338 39.073098121703964 21.133045516236333 3 16.593923372727808 29.131748059696815 32.92590371624526 21.34842485133012 4 12.706224059687537 22.141082993726467 38.69796634107642 26.454726605509578 5 11.922235132210991 39.39091063933232 36.74180493371259 11.945049294744106 6 27.551055984659417 41.7321091145498 18.74118280197579 11.975652098814992 7 23.80693444986522 33.98998351910656 25.268120386489347 16.934961644538877 8 23.169305395513454 38.554639239559904 21.800527612493493 16.475527752433152 9 24.768135979765525 16.342441139380696 21.98512001624899 36.90430286460478 10-11 23.018474433824135 27.981998162392372 30.317071278864553 18.682456124918932 12-13 23.92742857860262 25.646847027813845 30.20011129600026 20.225613097583274 14-15 21.1197571607123 26.973700940154604 27.747167421407887 24.159374477725205 16-17 20.6103528158658 29.90540878773073 28.46468602738499 21.01955236901848 18-19 20.678530403223906 29.072295944091064 30.205580258345737 20.043593394339297 20-21 21.462019378544177 28.252690963534306 30.054081378497553 20.231208279423964 22-23 21.15894148722527 28.208159978864522 29.939111123748884 20.69378741016132 24-25 21.028546359529834 28.398812583332962 29.900182076316504 20.672458980820696 26-27 21.0527603043723 28.475924087696896 29.801414423171067 20.669901184759738 28-29 21.033662430793534 28.51961183209408 29.857708007366107 20.58901772974628 30-31 21.25485653861051 28.417820570253404 29.769054033896612 20.558268857239472 32-33 21.138153637134668 28.54092555299641 29.636278493936434 20.684642315932486 34-35 21.225201246403326 28.586189338324967 29.661310981177763 20.527298434093943 36-37 21.19440978682204 28.554996195818255 29.628676624705573 20.621917392654133 38-39 21.113978043422243 28.638095344794046 29.647038693401313 20.600887918382398 40-41 21.31846898722357 28.54867986683636 29.487643633639394 20.645207512300676 42-43 21.224629115886895 28.689056321377848 29.223450660827925 20.862863901907332 44-45 21.357391991869363 28.755454080986027 29.011028461933012 20.876125465211597 46-47 21.395157136451807 28.77911137818026 28.759091018392414 21.06664046697552 48-49 21.35403626202849 28.91988526050811 28.70958737664811 21.016491100815283 50-51 21.431232553002946 28.946432509463516 28.529159614329245 21.093175323204292 52-53 21.49601638675512 28.898609657841 28.46771504099394 21.137658914409936 54-55 21.494434014339355 28.828303570134455 28.502985866184087 21.1742765493421 56-57 21.510885943466654 28.87537453985859 28.471663152683195 21.14207636399156 58-59 21.499114193468625 28.94744422343864 28.45229366526677 21.10114791782597 60-61 21.60052285323855 28.908741778690583 28.427032196136537 21.063703171934332 62-63 21.548724489622046 28.932037379134762 28.41280447339119 21.106433657852005 64-65 21.474892508229466 28.89454732245768 28.41887374041977 21.211686428893085 66-67 21.596703130118133 28.945656758831657 28.283905589213116 21.173734521837098 68-69 21.532727790171606 28.88008444595827 28.353462652720413 21.23372511114971 70-71 21.529380784178954 28.706823056792153 28.427244938331043 21.336551220697853 72-73 21.563445781709632 28.78353536923824 28.370136044338235 21.28288280471389 74-75 21.475731811536523 28.842700616384942 28.324589001425345 21.356978570653197 76-77 21.52158752869245 28.796256303628848 28.339542607344793 21.342613560333916 78-79 21.50417170347109 28.822720039983317 28.280370989812987 21.392737266732603 80-81 21.53125288704815 28.773433403910857 28.31382425538808 21.381489453652904 82-83 21.495277692438698 28.737970275350612 28.431842188509016 21.334909843701674 84-85 21.53554285882687 28.734261748727913 28.371405100548515 21.358790291896703 86-87 21.45936137782218 28.76347063625747 28.38106525614586 21.396102729774487 88-89 21.528274890363473 28.67793917831457 28.391034546916483 21.402751384405473 90-91 21.496299445365448 28.6741961455022 28.486769147565518 21.34273526156683 92-93 21.500191171365007 28.59732962886725 28.48569217334499 21.41678702642275 94-95 21.283570437109866 28.665192663357114 28.572001060118296 21.479235839414727 96-97 21.186780957354703 28.760879168863955 28.665432294170152 21.38690757961119 98-99 21.2909368274652 29.346282395347455 28.777166208596704 20.585614568590646 100-101 21.81361971950054 32.17041328383777 26.095366747118355 19.920600249543337 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4261.0 1 3729.0 2 4634.5 3 6348.5 4 7911.0 5 10885.0 6 13451.0 7 16423.0 8 19021.5 9 19740.0 10 18859.5 11 17757.0 12 19838.5 13 26866.0 14 43999.0 15 67730.5 16 85041.5 17 91122.0 18 90806.5 19 88477.5 20 85002.5 21 82337.0 22 83434.5 23 92171.0 24 109014.5 25 134147.5 26 165222.0 27 196082.5 28 226865.5 29 258134.5 30 286520.5 31 315587.0 32 346781.5 33 376237.5 34 403160.0 35 428412.0 36 455075.0 37 477624.5 38 491874.5 39 500300.5 40 508770.5 41 516887.5 42 519832.5 43 520016.0 44 518665.0 45 514186.5 46 504975.5 47 493038.0 48 479285.5 49 460405.5 50 439334.0 51 415861.0 52 387849.5 53 358755.0 54 329075.0 55 299143.5 56 270820.0 57 242057.0 58 210755.0 59 179127.5 60 148090.0 61 119472.5 62 93778.5 63 71917.0 64 53801.0 65 39758.5 66 29729.5 67 22645.5 68 17367.5 69 12793.0 70 9374.5 71 6840.5 72 4910.5 73 3542.5 74 2532.5 75 1762.0 76 1257.0 77 903.0 78 636.5 79 450.0 80 315.5 81 223.0 82 164.5 83 117.5 84 83.0 85 60.0 86 54.5 87 45.0 88 30.5 89 20.5 90 15.5 91 13.5 92 13.0 93 9.5 94 4.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 7.99655124737803E-6 2 0.001815217133154813 3 0.0 4 0.0 5 7.99655124737803E-6 6 7.99655124737803E-6 7 7.99655124737803E-6 8 7.99655124737803E-6 9 7.99655124737803E-6 10-11 7.99655124737803E-6 12-13 0.0 14-15 7.99655124737803E-6 16-17 7.99655124737803E-6 18-19 4.478068698531697E-4 20-21 4.6783326422463037E-4 22-23 2.479557151092815E-4 24-25 1.40021580125929E-4 26-27 0.002285614100677899 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.02896292874690328 38-39 0.012077816167898346 40-41 0.01973820595042537 42-43 0.0074019740304715155 44-45 0.0026755762522353253 46-47 0.004232143470758541 48-49 0.008340947301078296 50-51 0.006171710902983966 52-53 0.009867436615244194 54-55 0.0024534544332830218 56-57 0.015046330268800442 58-59 0.01176099119603894 60-61 0.011495692083839756 62-63 0.004175681413046956 64-65 0.005610267137782193 66-67 2.832194868378618E-4 68-69 8.928811851935674E-5 70-71 5.71117964843977E-4 72-73 8.676750689910139E-5 74-75 8.594264061204832E-4 76-77 9.451889855890351E-4 78-79 7.577102918283554E-4 80-81 1.1210588094712143E-4 82-83 0.0020090886406283603 84-85 0.00321003974134447 86-87 9.154646063180977E-4 88-89 0.06317495074738111 90-91 6.074760235065355E-4 92-93 0.0 94-95 3.461742465136146E-4 96-97 0.009578415987689062 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 557.0 20-21 1848.0 22-23 3490.0 24-25 6347.0 26-27 8571.0 28-29 12741.0 30-31 25182.0 32-33 33735.0 34-35 48366.0 36-37 70629.0 38-39 78609.0 40-41 86331.0 42-43 102455.0 44-45 121559.0 46-47 121929.0 48-49 108160.0 50-51 98064.0 52-53 97428.0 54-55 106515.0 56-57 112327.0 58-59 114663.0 60-61 113804.0 62-63 112254.0 64-65 119329.0 66-67 127862.0 68-69 133258.0 70-71 134264.0 72-73 132158.0 74-75 135842.0 76-77 135992.0 78-79 150094.0 80-81 156451.0 82-83 154267.0 84-85 159082.0 86-87 171531.0 88-89 187519.0 90-91 208620.0 92-93 226506.0 94-95 278988.0 96-97 375575.0 98-99 1081714.0 100-101 6850775.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.92429387543316 #Duplication Level Percentage of deduplicated Percentage of total 1 91.10922592179128 79.19605128789019 2 6.295759429338431 10.945088856096865 3 1.4467792767848204 3.772808010843911 4 0.5362827408565521 1.8646399426615081 5 0.24365661628296437 1.0589839659237024 6 0.11651839194130387 0.607696736579928 7 0.07553592521323314 0.45961348729714735 8 0.045130535271663504 0.3138351928567744 9 0.02900194270893151 0.22688760518906748 >10 0.0998787926791068 1.3513198854383428 >50 0.00165153211936542 0.09783075307296323 >100 5.505440339910617E-4 0.08973100539954333 >500 2.8350978367237978E-5 0.015513270750050864 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.7979307484268186E-5 0.0 0.0 0.0 3 0.0 4.7979307484268186E-5 0.0 0.0 0.0 4 0.0 9.595861496853637E-5 0.0 7.99655124737803E-6 0.0 5 0.0 1.039551662159144E-4 0.0 7.99655124737803E-6 0.0 6 7.99655124737803E-6 1.039551662159144E-4 0.0 7.99655124737803E-6 1.599310249475606E-5 7 7.99655124737803E-6 1.039551662159144E-4 0.0 2.3989653742134093E-5 1.599310249475606E-5 8 7.99655124737803E-6 1.1195171746329243E-4 0.0 2.3989653742134093E-5 1.599310249475606E-5 9 1.599310249475606E-5 1.7592412744231667E-4 0.0 4.7979307484268186E-5 3.998275623689015E-5 10-11 1.599310249475606E-5 1.7592412744231667E-4 0.0 7.99655124737803E-5 4.7979307484268186E-5 12-13 2.3989653742134093E-5 1.7592412744231667E-4 0.0 8.796206372115834E-5 5.5975858731646215E-5 14-15 3.598448061320114E-5 2.318999861739629E-4 0.0 9.595861496853637E-5 6.397240997902424E-5 16-17 4.7979307484268186E-5 2.318999861739629E-4 0.0 1.1195171746329243E-4 7.196896122640228E-5 18-19 4.7979307484268186E-5 2.798792936582311E-4 0.0 1.2394654433435948E-4 7.59672368500913E-5 20-21 4.7979307484268186E-5 3.358551523898773E-4 0.0 1.3594137120542652E-4 8.396378809746932E-5 22-23 6.397240997902424E-5 4.0382583799259054E-4 0.0 1.519344737001826E-4 8.796206372115834E-5 24-25 7.59672368500913E-5 4.358120429821027E-4 0.0 1.799224030660057E-4 9.196033934484735E-5 26-27 7.99655124737803E-5 4.558034211005478E-4 0.0 2.2390343492658486E-4 9.595861496853637E-5 28-29 7.99655124737803E-5 4.598016967242368E-4 0.0 8.556309834694492E-4 9.595861496853637E-5 30-31 7.99655124737803E-5 4.7979307484268186E-4 0.0 0.0022710205542553607 9.995689059222538E-5 32-33 8.396378809746932E-5 4.8778962609005987E-4 0.0 0.0056495634562725786 1.1994826871067047E-4 34-35 9.595861496853637E-5 5.31770657950639E-4 0.0 0.010379523519096684 1.1994826871067047E-4 36-37 9.595861496853637E-5 5.717534141875293E-4 0.0 0.01662083176767524 1.2394654433435948E-4 38-39 9.595861496853637E-5 5.757516898112182E-4 0.0 0.025900829490257442 1.279448199580485E-4 40-41 1.039551662159144E-4 6.077378948007304E-4 0.0 0.03599247716444852 1.279448199580485E-4 42-43 1.0795344183960341E-4 6.237309972954864E-4 0.0 0.044936619734640845 1.319430955817375E-4 44-45 1.1994826871067045E-4 6.996982341455776E-4 0.0 0.05591588459729088 1.3993964682911555E-4 46-47 1.279448199580485E-4 7.636706441246019E-4 0.0 0.06842648902381382 1.519344737001826E-4 48-49 1.3594137120542652E-4 7.7166719537198E-4 0.0 0.08013743832559894 1.519344737001826E-4 50-51 1.519344737001826E-4 8.1164995160887E-4 0.0 0.09129662559131499 1.519344737001826E-4 52-53 1.519344737001826E-4 8.156482272325591E-4 0.0 0.10190804909658563 1.519344737001826E-4 54-55 1.559327493238716E-4 8.196465028562482E-4 0.0 0.11348705530278902 1.559327493238716E-4 56-57 1.6792757619493864E-4 8.476344322220713E-4 0.0 0.125649809750051 1.7192585181862764E-4 58-59 1.7592412744231667E-4 8.516327078457603E-4 0.0 0.13767662282610754 1.7592412744231667E-4 60-61 1.7592412744231667E-4 8.716240859642054E-4 0.0 0.14879182905996302 1.7592412744231667E-4 62-63 1.839206786896947E-4 8.956137397063394E-4 0.0 0.15905540258597273 1.7592412744231667E-4 64-65 1.839206786896947E-4 0.001039551662159144 0.0 0.1696268433350065 1.7592412744231667E-4 66-67 1.879189543133837E-4 0.0010435499377828331 0.0 0.1802502616671482 1.7592412744231667E-4 68-69 1.9191722993707274E-4 0.0010555447646539 0.0 0.19085368862117147 1.7592412744231667E-4 70-71 1.9191722993707274E-4 0.001071537867148656 0.0 0.19994576738944028 1.7592412744231667E-4 72-73 2.0791033243182882E-4 0.001071537867148656 0.0 0.20660689457850617 1.9991378118445078E-4 74-75 2.1590688367920682E-4 0.0010995257965144792 0.0 0.2123444200984999 1.9991378118445078E-4 76-77 2.1590688367920682E-4 0.0011634982064935035 0.0 0.21727829221813216 1.9991378118445078E-4 78-79 2.1590688367920682E-4 0.0012074792383540826 0.0 0.22152446093048989 1.9991378118445078E-4 80-81 2.1590688367920682E-4 0.0012114775139777717 0.0 0.2241473297396299 2.0391205680813978E-4 82-83 2.1990515930289586E-4 0.0012194740652251498 0.0 0.22548275379794203 2.318999861739629E-4 84-85 2.2390343492658486E-4 0.0012554585458383507 0.0 0.2266862347606724 2.318999861739629E-4 86-87 2.2390343492658486E-4 0.0012554585458383507 0.0 0.22713803990614928 2.318999861739629E-4 88-89 2.2390343492658486E-4 0.0012554585458383507 0.0 0.2272379967967415 2.318999861739629E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14525 0.0 51.383717 1 GTATCAA 25770 0.0 33.70469 1 TCAACGC 35315 0.0 26.401625 3 ATCAACG 35555 0.0 26.212646 2 CAACGCA 36220 0.0 25.788332 4 TATCAAC 36985 0.0 25.210506 1 AACGCAG 37310 0.0 25.10247 5 ACGCAGA 43125 0.0 21.795551 6 CGCAGAG 43735 0.0 21.501158 7 AGAGTAC 46275 0.0 18.841602 10-11 CAGAGTA 49935 0.0 18.755848 9 GCAGAGT 51135 0.0 18.438898 8 AGTACTT 35770 0.0 16.92522 12-13 GAGTACT 32015 0.0 16.922901 12-13 TGGTATC 6555 0.0 16.082563 2 GTACATG 30670 0.0 15.926494 1 GTGGTAT 7045 0.0 15.79862 1 TACATGG 30890 0.0 15.690693 2 ACATGGG 31150 0.0 15.006313 3 GTACTTT 36405 0.0 14.917531 14-15 >>END_MODULE