##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139795_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12222303 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.80128859511992 31.0 31.0 34.0 30.0 34.0 2 31.977385194917847 31.0 31.0 34.0 30.0 34.0 3 32.00072130432374 31.0 31.0 34.0 30.0 34.0 4 35.72275568687832 37.0 35.0 37.0 35.0 37.0 5 35.531715667661 37.0 35.0 37.0 33.0 37.0 6 35.53639563673065 37.0 35.0 37.0 33.0 37.0 7 35.42623260117181 37.0 35.0 37.0 33.0 37.0 8 35.40745749798545 37.0 35.0 37.0 33.0 37.0 9 36.944820464686565 39.0 37.0 39.0 33.0 39.0 10-11 36.82979582489487 39.0 37.0 39.0 32.5 39.0 12-13 36.77357835098672 39.0 37.0 39.0 32.0 39.0 14-15 37.8818464899782 40.0 37.0 41.0 33.0 41.0 16-17 37.864999092233276 40.0 37.0 41.0 33.0 41.0 18-19 37.8985980383566 40.0 37.0 41.0 33.0 41.0 20-21 37.87583244486481 40.0 37.0 41.0 32.0 41.0 22-23 37.804645409215254 40.0 37.0 41.0 32.0 41.0 24-25 37.71961498426526 39.0 37.0 41.0 32.0 41.0 26-27 37.52699159471553 39.0 36.0 41.0 32.0 41.0 28-29 37.41628290685571 39.0 36.0 41.0 32.0 41.0 30-31 37.26122346442836 39.0 36.0 40.0 31.0 41.0 32-33 37.432197380813335 39.0 36.0 41.0 32.0 41.0 34-35 37.3884058611319 39.0 36.0 41.0 31.5 41.0 36-37 37.29687277927674 39.0 36.0 41.0 31.0 41.0 38-39 37.192726230146846 39.0 36.0 41.0 31.0 41.0 40-41 37.098379870358315 39.0 36.0 40.0 31.0 41.0 42-43 37.05182357841619 39.0 35.5 40.0 31.0 41.0 44-45 37.07611820595528 39.0 35.5 40.0 31.0 41.0 46-47 37.18234087497293 39.0 36.0 41.0 31.0 41.0 48-49 37.12388881284857 39.0 36.0 41.0 31.0 41.0 50-51 37.01357662403367 39.0 35.0 40.5 31.0 41.0 52-53 36.91264011228385 39.0 35.0 40.0 31.0 41.0 54-55 36.785438261720586 39.0 35.0 40.0 30.0 41.0 56-57 36.656762405532284 38.5 35.0 40.0 30.0 41.0 58-59 36.51029367175184 38.0 35.0 40.0 30.0 41.0 60-61 36.288978135962125 38.0 34.5 40.0 29.5 41.0 62-63 36.068044558081596 38.0 34.0 40.0 29.0 41.0 64-65 35.86182841037366 37.5 34.0 40.0 29.0 41.0 66-67 35.59995497435263 37.0 34.0 40.0 29.0 41.0 68-69 35.31836896583975 36.5 34.0 39.0 29.0 41.0 70-71 35.02364749892499 36.0 33.5 39.0 28.0 40.0 72-73 34.719022098388024 35.5 33.0 39.0 28.0 40.0 74-75 34.36792571912892 35.0 33.0 38.0 28.0 40.0 76-77 33.328518345037466 34.5 31.5 36.5 26.5 39.0 78-79 33.74031232133386 35.0 32.0 37.0 28.0 39.0 80-81 33.64006967508914 35.0 32.0 36.0 28.0 39.0 82-83 33.41287588421429 35.0 32.0 36.0 28.0 37.5 84-85 33.187993023020155 35.0 32.0 36.0 28.0 37.0 86-87 32.98007156882012 34.0 32.0 35.0 27.0 37.0 88-89 32.77837248205638 34.0 32.0 35.0 27.0 36.0 90-91 32.656008021381254 34.0 32.0 35.0 27.0 36.0 92-93 32.57956184585807 34.0 32.0 35.0 27.0 36.0 94-95 32.543199035465705 34.0 32.0 35.0 27.0 35.5 96-97 32.55435737034561 34.0 32.0 35.0 27.0 35.0 98-99 32.676330387207074 34.0 32.0 35.0 29.0 35.0 100-101 32.04846468599759 33.5 30.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 1.0 19 17.0 20 114.0 21 679.0 22 3187.0 23 10401.0 24 26763.0 25 55547.0 26 99019.0 27 154446.0 28 218061.0 29 290417.0 30 365504.0 31 452423.0 32 553555.0 33 688911.0 34 878912.0 35 1149180.0 36 1601259.0 37 2289350.0 38 2352360.0 39 1000079.0 40 32116.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.72513248935164 22.480992330168874 15.638460280357966 24.155414900121524 2 13.815494380965237 23.091626881364114 40.816684871766554 22.276193865904098 3 16.47915290596216 28.1526566638055 31.981910446828227 23.38627998340411 4 12.031447755795286 19.797226431058043 39.71088754713412 28.46043826601255 5 12.37620477518922 38.61429202242687 36.397025404627165 12.61247779775674 6 28.180081937094837 39.97960940749055 19.221352964330862 12.61895569108375 7 24.65317706491158 33.456051613186155 24.86546111645244 17.025310205449824 8 23.623755686632872 37.43412350356557 21.931431416812362 17.010689392989192 9 25.18960624687508 16.550358798992303 21.906681580386284 36.35335337374634 10-11 23.327858096792397 27.31112540738026 30.04623187626751 19.314784619559834 12-13 24.336162341908885 25.031215475512266 29.88849155515127 20.74413062742758 14-15 21.58353871606685 26.30836021656475 27.36613958924108 24.741961478127322 16-17 21.070390743872082 29.270056551535333 28.06798358705393 21.59156911753865 18-19 21.148016392543298 28.50803138812779 29.69934908543339 20.644603133895522 20-21 21.936339651682204 27.715889534015787 29.48995373079025 20.85781708351176 22-23 21.69127403751142 27.627754688804586 29.354902354060545 21.32606891962345 24-25 21.4880294571868 27.800735725720223 29.34650297815767 21.364731838935313 26-27 21.490820969764986 27.907838061741025 29.245543071602725 21.355797896891264 28-29 21.45075717781161 27.922354630661424 29.312476614000673 21.3144115775263 30-31 21.705067509796528 27.82748249524164 29.177653809330163 21.289796185631673 32-33 21.528322749111542 27.98282134290386 29.090119928010456 21.398735979974134 34-35 21.63066132684554 28.005906215801986 29.092510965232577 21.2709214921199 36-37 21.64006099556316 27.97725719325871 29.019386359026296 21.36329545215184 38-39 21.503288328722956 28.08986911992238 29.073661559593507 21.33318099176116 40-41 21.693126563054573 27.95902503850307 28.955559604270988 21.392288794171364 42-43 21.58199844091562 28.080941779459312 28.729286938905485 21.607772840719587 44-45 21.696055573086987 28.158605933568424 28.552505371307397 21.592833122037188 46-47 21.779685643679215 28.155649747757476 28.307886144319035 21.756778464244277 48-49 21.700900814994398 28.311448775744484 28.241857074564674 21.74579333469644 50-51 21.78552625964745 28.33891160790069 28.111365433962902 21.764196698488956 52-53 21.892570834335046 28.268837250753588 28.025024101146634 21.81356781376473 54-55 21.84787377952341 28.18593828963073 28.07020094555328 21.895986985292577 56-57 21.823008399496743 28.279509890278348 28.06892528876797 21.828556421456938 58-59 21.812628724825256 28.303966376719575 28.0225114482747 21.86089345018047 60-61 21.917213982827775 28.2676395812988 28.04308379517606 21.772062640697367 62-63 21.880000813620377 28.307938480012172 28.01770045162945 21.79436025473799 64-65 21.868464516878944 28.25699266128783 27.965995701621566 21.908547120211665 66-67 21.931173122745335 28.302431712247582 27.8540776736375 21.91231749136958 68-69 21.844096871480613 28.269686682819234 27.93749335325587 21.948723092444283 70-71 21.881546948426696 28.087574175897355 28.007213689262727 22.023665186413215 72-73 21.92337584005922 28.15508381317534 27.91568630318908 22.005854043576356 74-75 21.787993356490134 28.2357201964417 27.923490494422182 22.05279595264599 76-77 21.885160071189077 28.164308425935708 27.891303744301005 22.05922775857421 78-79 21.882887753106257 28.165540101189947 27.855419437051825 22.09615270865197 80-81 21.89873960275507 28.13031231068298 27.89208452967315 22.078863556888802 82-83 21.904441637419154 28.102643121818126 27.961138915232382 22.031776325530338 84-85 21.927027162487988 28.110676308260906 27.944115634097976 22.01818089515313 86-87 21.815376212114153 28.124721891863462 27.998598826976778 22.0613030690456 88-89 21.88296199954258 28.057919528129023 27.950472858786668 22.10864561354173 90-91 21.91826044330076 28.032045538038652 28.048930975749613 22.000763042910975 92-93 21.911491560124816 27.958221897276804 28.017073650985708 22.113212891612672 94-95 21.73913762516517 27.982175473048336 28.12405866978272 22.154628232003777 96-97 21.693817962240395 28.046599313285036 28.172644008052483 22.086938716422086 98-99 21.8111672667403 28.668199922540293 28.267870320342098 21.252762490377304 100-101 22.33152547094208 31.400985706569173 25.563818889497885 20.703669932990863 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3531.0 1 3131.0 2 4038.5 3 5667.0 4 7426.0 5 11147.0 6 14285.5 7 16939.5 8 18868.5 9 18871.0 10 17650.5 11 16487.5 12 18199.0 13 23831.5 14 37287.5 15 55674.0 16 69701.5 17 76401.5 18 77232.5 19 74623.5 20 70605.0 21 67993.5 22 69858.5 23 78537.0 24 93440.5 25 114921.5 26 141532.5 27 168391.0 28 195591.0 29 223240.5 30 249016.0 31 275632.0 32 303998.0 33 331942.0 34 358491.0 35 383229.0 36 410237.5 37 433553.5 38 449788.5 39 462898.5 40 473764.5 41 483266.5 42 489412.0 43 495941.5 44 501541.5 45 503347.0 46 500369.0 47 493470.5 48 485636.0 49 474224.0 50 460416.0 51 443876.5 52 422403.5 53 397752.0 54 371930.5 55 345167.0 56 316486.0 57 285276.0 58 252603.0 59 218368.0 60 183243.0 61 149411.5 62 118752.5 63 92344.0 64 69185.5 65 51179.5 66 38275.0 67 28955.0 68 22237.0 69 16291.5 70 11540.0 71 8227.5 72 5695.5 73 3884.0 74 2631.0 75 1799.0 76 1245.0 77 815.5 78 557.5 79 390.0 80 270.0 81 193.0 82 154.5 83 123.5 84 97.5 85 76.0 86 54.5 87 39.0 88 27.5 89 19.5 90 13.5 91 9.5 92 6.5 93 3.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0037063391408313144 3 0.0 4 0.0 5 1.6363528215590793E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 3.1499791815012274E-4 20-21 6.995746586075666E-4 22-23 2.20946623714643E-4 24-25 1.596162595926814E-4 26-27 0.002309363288887098 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03331785574272083 38-39 0.016171852890044875 40-41 0.021085297845379217 42-43 0.01029853513924132 44-45 0.004128727571040079 46-47 0.0049251034336525055 48-49 0.00871839581517001 50-51 0.006452668442854744 52-53 0.010516323936038161 54-55 0.0037019143204718957 56-57 0.01570333112746473 58-59 0.012455043360722371 60-61 0.012503583442793675 62-63 0.004647707293940695 64-65 0.0061988819617117925 66-67 3.679367141206274E-4 68-69 5.996844595786317E-4 70-71 9.891327607136054E-4 72-73 9.916215416888852E-5 74-75 0.0031526710578822876 76-77 0.004001454353244221 78-79 0.0032304802353603215 80-81 5.801985753145578E-4 82-83 0.003347310698439984 84-85 0.004704973657799944 86-87 0.001628990164944547 88-89 0.07101517574908171 90-91 0.001081154453328968 92-93 5.776008470862983E-6 94-95 4.7841495102241704E-4 96-97 0.011433011749772357 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 337.0 20-21 1295.0 22-23 2572.0 24-25 5271.0 26-27 7394.0 28-29 12252.0 30-31 27208.0 32-33 35851.0 34-35 50642.0 36-37 74593.0 38-39 84381.0 40-41 88561.0 42-43 104036.0 44-45 122546.0 46-47 124036.0 48-49 111540.0 50-51 100907.0 52-53 99403.0 54-55 108437.0 56-57 113431.0 58-59 114047.0 60-61 112914.0 62-63 109680.0 64-65 116593.0 66-67 123986.0 68-69 127476.0 70-71 127582.0 72-73 124319.0 74-75 126026.0 76-77 126703.0 78-79 137290.0 80-81 141026.0 82-83 137494.0 84-85 139656.0 86-87 148234.0 88-89 158790.0 90-91 174964.0 92-93 183750.0 94-95 218806.0 96-97 300173.0 98-99 1016791.0 100-101 6981310.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.15019652319108 #Duplication Level Percentage of deduplicated Percentage of total 1 90.06936201191508 76.69423876033011 2 6.800925622413893 11.582003065762974 3 1.7169760828544676 4.386025526420302 4 0.6323123948004008 2.153660987252149 5 0.29304550933442464 1.2476441355032442 6 0.168337454991954 0.8600380424867229 7 0.09209437270633491 0.5489297754237096 8 0.05740097854596571 0.3910163683049963 9 0.038490875903355246 0.2949755082768414 >10 0.12879440430675823 1.6703035832470237 >50 0.001896203236864446 0.1111473958140018 >100 3.4819440756446375E-4 0.052843688847626885 >500 1.589458286706169E-5 0.007173162330357579 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.909058464677238E-5 0.0 0.0 0.0 3 0.0 4.909058464677238E-5 0.0 0.0 0.0 4 0.0 8.181764107795397E-5 0.0 0.0 0.0 5 0.0 8.999940518574936E-5 0.0 0.0 0.0 6 0.0 8.999940518574936E-5 0.0 0.0 8.181764107795397E-6 7 0.0 9.818116929354476E-5 0.0 1.6363528215590793E-5 8.181764107795397E-6 8 0.0 1.1454469750913555E-4 0.0 1.6363528215590793E-5 8.181764107795397E-6 9 0.0 1.6363528215590793E-4 0.0 4.909058464677238E-5 1.6363528215590793E-5 10-11 8.181764107795397E-6 1.6363528215590793E-4 0.0 5.7272348754567776E-5 1.6363528215590793E-5 12-13 8.181764107795397E-6 1.6772616420980562E-4 0.0 6.136323080846548E-5 1.6363528215590793E-5 14-15 8.181764107795397E-6 2.3727115912606652E-4 0.0 6.545411286236317E-5 2.454529232338619E-5 16-17 1.2272646161693095E-5 2.454529232338619E-4 0.0 8.181764107795397E-5 4.090882053897698E-5 18-19 2.045441026948849E-5 2.7817997966504346E-4 0.0 8.590852313185166E-5 4.090882053897698E-5 20-21 2.454529232338619E-5 3.109070360962251E-4 0.0 1.0227205134744245E-4 4.090882053897698E-5 22-23 2.454529232338619E-5 3.6817938485079284E-4 0.0 1.4318087188641945E-4 5.318146670067008E-5 24-25 4.499970259287468E-5 4.172699694975652E-4 0.0 1.7999881037149873E-4 6.545411286236317E-5 26-27 4.909058464677238E-5 4.33633497713156E-4 0.0 2.9863438993453197E-4 6.545411286236317E-5 28-29 4.909058464677238E-5 4.33633497713156E-4 0.0 9.08175815965289E-4 6.545411286236317E-5 30-31 4.909058464677238E-5 4.663605541443376E-4 0.0 0.0022827121860749156 6.545411286236317E-5 32-33 4.909058464677238E-5 4.786332003060307E-4 0.0 0.005170874916126691 7.363587697015857E-5 34-35 4.909058464677238E-5 5.277237849528031E-4 0.0 0.00917175756483864 8.999940518574936E-5 36-37 4.909058464677238E-5 5.727234875456778E-4 0.0 0.01473535715813951 9.818116929354476E-5 38-39 4.909058464677238E-5 5.849961337073709E-4 0.0 0.022577578055461397 1.0636293340134016E-4 40-41 4.909058464677238E-5 6.38177600408041E-4 0.0 0.03147933740474279 1.1454469750913555E-4 42-43 4.909058464677238E-5 6.627228927314271E-4 0.0 0.03973064650745445 1.1454469750913555E-4 44-45 4.909058464677238E-5 7.281770055937903E-4 0.0 0.04934831021616794 1.1454469750913555E-4 46-47 4.909058464677238E-5 7.854493543483581E-4 0.0 0.0597105144586908 1.3090822572472635E-4 48-49 4.909058464677238E-5 7.895402364022558E-4 0.0 0.06977817519333304 1.5545351804811255E-4 50-51 4.909058464677238E-5 8.631761133724143E-4 0.0 0.07913402245059709 1.5545351804811255E-4 52-53 4.909058464677238E-5 8.67266995426312E-4 0.0 0.08845305176937604 1.7590792831760103E-4 54-55 4.909058464677238E-5 8.795396415880051E-4 0.0 0.09806662459603563 1.9636233858708952E-4 56-57 4.909058464677238E-5 8.836305236419029E-4 0.0 0.10643656927831033 2.004532206409872E-4 58-59 4.909058464677238E-5 9.040849339113913E-4 0.0 0.11379606609327228 2.0454410269488493E-4 60-61 4.909058464677238E-5 9.286302262347775E-4 0.0 0.12106556350304848 2.127258668026803E-4 62-63 4.909058464677238E-5 9.409028723964706E-4 0.0 0.1278277915381414 2.2090763091047572E-4 64-65 4.909058464677238E-5 0.0011168108007140716 0.0 0.13478638191182135 2.2090763091047572E-4 66-67 4.909058464677238E-5 0.0011454469750913556 0.0 0.1416345184700461 2.2090763091047572E-4 68-69 4.909058464677238E-5 0.0012109010879537186 0.0 0.1489081067618762 2.2090763091047572E-4 70-71 5.7272348754567776E-5 0.0012518099084926956 0.0 0.15560488068410674 2.290893950182711E-4 72-73 5.7272348754567776E-5 0.0012722643187621841 0.0 0.16105802646195239 2.454529232338619E-4 74-75 5.7272348754567776E-5 0.001300900493139468 0.0 0.16608981138824655 2.454529232338619E-4 76-77 6.545411286236317E-5 0.0013663546060018314 0.0 0.17038932842689303 2.495438052877596E-4 78-79 6.545411286236317E-5 0.001399081662433013 0.0 0.1736661249520651 2.536346873416573E-4 80-81 6.545411286236317E-5 0.0014072634265408083 0.0 0.1756215665738282 2.699982155572481E-4 82-83 6.545411286236317E-5 0.0014195360727025015 0.0 0.176869285600267 2.945435078806343E-4 84-85 6.545411286236317E-5 0.0014277178368102966 0.0 0.17815791344724474 2.945435078806343E-4 86-87 6.545411286236317E-5 0.0014318087188641944 0.0 0.17854245636031113 2.945435078806343E-4 88-89 6.545411286236317E-5 0.0014563540111875806 0.0 0.17855881988852673 3.068161540423274E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14065 0.0 50.08881 1 GTATCAA 25250 0.0 35.582863 1 TCAACGC 32435 0.0 27.039179 4 ATCAACG 32530 0.0 26.94731 3 CAACGCA 33085 0.0 26.507957 5 TATCAAC 34140 0.0 25.91132 2 AACGCAG 33990 0.0 25.87628 6 ACGCAGA 39795 0.0 22.10164 7 CGCAGAG 40295 0.0 21.816973 8 GTACATG 31935 0.0 19.102367 1 AGAGTAC 42700 0.0 18.774172 10-11 TACATGG 31810 0.0 18.702286 2 GCAGAGT 47175 0.0 18.474997 9 ACATGGG 32085 0.0 18.070103 3 GAGTACT 28495 0.0 17.94517 12-13 AGTACTT 32235 0.0 16.820375 12-13 CAGAGTA 46385 0.0 16.807507 10-11 CATGGGG 23925 0.0 15.810362 4 GTACTTT 32765 0.0 15.639385 14-15 GTGGTAT 6810 0.0 14.672981 1 >>END_MODULE