##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139793_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13901776 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.53512637521997 31.0 31.0 34.0 30.0 34.0 2 31.72957383286855 31.0 31.0 34.0 30.0 34.0 3 31.74492410178383 31.0 31.0 34.0 30.0 34.0 4 35.51432342169806 37.0 35.0 37.0 33.0 37.0 5 35.29722907346515 37.0 35.0 37.0 33.0 37.0 6 35.30159642911812 37.0 35.0 37.0 32.0 37.0 7 35.185731664788726 37.0 35.0 37.0 32.0 37.0 8 35.166301989040825 37.0 35.0 37.0 32.0 37.0 9 36.664108096692104 39.0 35.0 39.0 32.0 39.0 10-11 36.519312352608765 38.0 35.0 39.0 32.0 39.0 12-13 36.458129234710725 38.0 35.0 39.0 32.0 39.0 14-15 37.49545759477063 39.0 36.0 41.0 32.0 41.0 16-17 37.46303443531244 39.0 36.0 41.0 32.0 41.0 18-19 37.4843684720571 39.0 36.0 41.0 32.0 41.0 20-21 37.45818227318864 39.0 36.0 40.0 32.0 41.0 22-23 37.38046630370148 39.0 36.0 40.0 32.0 41.0 24-25 37.28468550803052 39.0 36.0 40.0 31.0 41.0 26-27 37.06393330613848 39.0 36.0 40.0 31.0 41.0 28-29 36.937629938072064 39.0 36.0 40.0 31.0 41.0 30-31 36.77412957195689 38.5 35.5 40.0 30.0 41.0 32-33 36.964030798073914 39.0 36.0 40.0 31.0 41.0 34-35 36.91123410440881 39.0 35.5 40.0 30.5 41.0 36-37 36.809330013702066 38.5 35.0 40.0 30.0 41.0 38-39 36.685551917950114 38.0 35.0 40.0 30.0 41.0 40-41 36.582314562675975 38.0 35.0 40.0 30.0 41.0 42-43 36.51977275834127 38.0 35.0 40.0 30.0 41.0 44-45 36.5477499208844 38.0 35.0 40.0 30.0 41.0 46-47 36.66558722182412 38.0 35.0 40.0 30.0 41.0 48-49 36.60338290021082 38.5 35.0 40.0 30.0 41.0 50-51 36.48875115514518 38.0 35.0 40.0 30.0 41.0 52-53 36.378378308693904 38.0 35.0 40.0 30.0 41.0 54-55 36.23874276228795 38.0 34.5 40.0 29.0 41.0 56-57 36.10334099496926 38.0 34.0 40.0 29.0 41.0 58-59 35.94711949649361 38.0 34.0 40.0 29.0 41.0 60-61 35.7207283287694 38.0 34.0 40.0 28.0 41.0 62-63 35.49224987494387 37.0 34.0 40.0 28.0 41.0 64-65 35.28109942793904 37.0 33.5 40.0 28.0 41.0 66-67 35.01705153598536 36.5 33.0 39.0 28.0 40.5 68-69 34.72971400465507 36.0 33.0 39.0 28.0 40.0 70-71 34.43273648704243 36.0 32.5 39.0 27.5 40.0 72-73 34.126751523968906 35.0 32.0 38.0 27.0 40.0 74-75 33.77313991073852 35.0 32.0 37.5 26.0 39.5 76-77 32.79043106675088 34.0 31.0 36.0 26.0 39.0 78-79 33.231053771065774 34.5 31.5 36.0 26.0 39.0 80-81 33.143570274629255 34.5 32.0 36.0 26.0 38.5 82-83 32.92328063592946 34.0 31.5 36.0 26.0 37.5 84-85 32.705007748936254 34.0 31.0 35.0 26.0 37.0 86-87 32.4914831545134 34.0 31.0 35.0 26.0 36.5 88-89 32.29041299076444 34.0 31.0 35.0 26.0 36.0 90-91 32.170537284678204 34.0 31.0 35.0 26.0 36.0 92-93 32.09841615423212 34.0 31.0 35.0 26.0 35.5 94-95 32.07008434021161 34.0 31.0 35.0 26.0 35.0 96-97 32.100776918199095 34.0 31.0 35.0 26.0 35.0 98-99 32.262787982677416 34.0 31.0 35.0 27.0 35.0 100-101 31.644424408329662 33.0 30.0 34.5 25.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 1.0 12 1.0 13 0.0 14 1.0 15 0.0 16 0.0 17 2.0 18 6.0 19 24.0 20 211.0 21 1219.0 22 5457.0 23 17118.0 24 42767.0 25 85518.0 26 147492.0 27 222817.0 28 310441.0 29 399831.0 30 497127.0 31 601336.0 32 725754.0 33 891476.0 34 1119668.0 35 1440817.0 36 1946345.0 37 2524691.0 38 2165221.0 39 743676.0 40 12758.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.02517404970415 23.452586201935638 16.334459712197923 24.187780036162284 2 14.019103635177885 23.990158428214407 39.97275677523433 22.017981161373378 3 16.72718651199674 28.361002220147984 32.12985880365214 22.781952464203133 4 12.41678761044632 20.524384798028684 39.036616616466844 28.022210975058147 5 12.357279895161573 38.73168551953769 36.426792467406855 12.484242117893883 6 28.309620295996712 40.308921680222724 18.936371870759537 12.445086153021025 7 24.503595799558273 33.39639482034526 24.90410577756396 17.19590360253251 8 23.497580453029887 37.82608063890542 21.829527392759026 16.84681151530567 9 25.138126236532653 16.353586764741426 21.65867152513463 36.84961547359129 10-11 23.42792028874584 27.385709566892746 29.997178058400596 19.189192085960816 12-13 24.32732695448409 25.01928170904207 29.841090088057815 20.81230124841603 14-15 21.541182939503557 26.288651895987964 27.28767173345334 24.88249343105514 16-17 21.196475184177906 29.20332625126459 27.96776469423763 21.63243387031988 18-19 21.261517947210663 28.51822706795058 29.516833104602785 20.70342188023597 20-21 22.019684852586614 27.732829221780484 29.28574041456262 20.96174551107028 22-23 21.744876758659537 27.665557199734337 29.16508590232571 21.424480139280416 24-25 21.554366664925002 27.83187976232167 29.145059578634974 21.46869399411835 26-27 21.593452127260097 27.91849174671745 29.045377194731444 21.442678931291013 28-29 21.58139655528324 27.979095658276375 29.069863789981003 21.369643996459384 30-31 21.83876579008885 27.83858926910393 28.953257611096856 21.36938732971036 32-33 21.674330137486287 27.98363413605511 28.886268227394936 21.455767499063672 34-35 21.773651722910287 27.97716925437353 28.918376477088408 21.330802545627776 36-37 21.722751323830472 27.947660042163424 28.901139216620443 21.42844941738566 38-39 21.63116457584013 28.034607178253857 28.921119144043868 21.413109101862148 40-41 21.81694383830192 27.970727051189442 28.75688686674553 21.45544224376311 42-43 21.66470292097448 28.095024977745286 28.589214079097903 21.651058022182323 44-45 21.815692422112555 28.11271001037933 28.40219260264795 21.669404964860163 46-47 21.879616603662583 28.116007841085892 28.208536350450657 21.795839204800867 48-49 21.78482222652368 28.255124355321374 28.173858141424706 21.78619527673024 50-51 21.84413275194584 28.311215549019693 28.034861942086525 21.809789756947943 52-53 21.970587306524923 28.19940711726393 27.971144966576805 21.85886060963434 54-55 21.896850811887784 28.09261365957594 28.076653237337723 21.933882291198554 56-57 21.920945707187872 28.178637935077646 28.012601060942778 21.887815296791707 58-59 21.92985564191898 28.281452485251318 27.94345166855663 21.845240204273072 60-61 22.044652738772548 28.214562061391195 27.965773859796357 21.775011340039896 62-63 22.00628977440718 28.252862864964452 27.94609831406391 21.794749046564462 64-65 21.924760101322928 28.24318975721981 27.931135449744072 21.900914691713186 66-67 21.997661758031693 28.278890778166087 27.80419837828907 21.919249085513147 68-69 21.94906136217916 28.243024781024168 27.871012820040015 21.93690103675666 70-71 21.9533344577133 28.05549291132463 27.941425378456564 22.049747252505508 72-73 22.013102563571294 28.11817022803541 27.854430130397105 22.01429707799619 74-75 21.85334458150526 28.191629920477585 27.868941608559567 22.086083889457583 76-77 21.949155628716188 28.106237131653078 27.87785037130066 22.066756868330074 78-79 21.924184975128437 28.15639435548353 27.835197790949994 22.08422287843803 80-81 21.963430882145087 28.136747767294874 27.814969587207077 22.084851763352958 82-83 21.927347279311494 28.097807001520252 27.943013577906132 22.031832141262118 84-85 21.979136859328992 28.082930241103753 27.89311774584256 22.04481515372469 86-87 21.89614918367019 28.095106023161488 27.936886836315654 22.07185795685267 88-89 21.912219910341125 28.05673407487408 27.927464280179542 22.103581734605253 90-91 21.921579211704685 28.072557338940936 28.008683698571957 21.997179750782426 92-93 21.965839606257905 27.961007550897154 27.994123057221504 22.07902978562344 94-95 21.73113409147919 27.988918657570512 28.120042570767982 22.159904680182315 96-97 21.645628088551337 28.081731199750454 28.184660168223957 22.08798054347425 98-99 21.774949158792516 28.705115748178113 28.270597991179002 21.249337101850365 100-101 22.32799735427063 31.479536758068573 25.495206176108248 20.697259711552555 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3897.0 1 3339.0 2 4144.5 3 5796.5 4 7348.0 5 10555.0 6 13312.5 7 16223.5 8 18561.0 9 18906.0 10 17870.0 11 16638.5 12 18421.5 13 24238.0 14 37874.5 15 57217.0 16 72436.0 17 79232.0 18 80044.0 19 78010.0 20 74724.0 21 72467.5 22 74295.5 23 83226.5 24 100173.0 25 124833.0 26 155822.0 27 188109.0 28 220930.0 29 254417.0 30 284647.5 31 314680.5 32 346241.5 33 377124.0 34 406331.5 35 434195.0 36 463988.5 37 489365.0 38 508096.5 39 522659.5 40 537285.0 41 551961.5 42 559000.0 43 565231.5 44 571950.5 45 576054.5 46 576181.0 47 572049.5 48 565072.0 49 551055.0 50 533833.0 51 514639.0 52 488258.5 53 459169.5 54 429084.0 55 394624.5 56 360458.0 57 325320.5 58 286987.0 59 246751.0 60 206217.5 61 168135.0 62 133333.5 63 102926.0 64 76732.5 65 56644.5 66 42192.0 67 31986.0 68 24046.5 69 17173.0 70 12087.5 71 8427.5 72 5757.5 73 3890.5 74 2631.5 75 1764.0 76 1233.5 77 887.0 78 627.0 79 464.0 80 359.0 81 267.0 82 205.0 83 144.0 84 89.5 85 63.0 86 49.5 87 36.5 88 25.5 89 15.5 90 10.5 91 8.5 92 6.5 93 4.0 94 1.5 95 1.0 96 0.5 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0024313440239578025 3 0.0 4 0.0 5 2.157997654400416E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 3.4168296194673256E-4 20-21 5.323371243529812E-4 22-23 1.5828603279010288E-4 24-25 1.1515130665786143E-4 26-27 0.002336537509905533 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.030464375832017533 38-39 0.014130515700442738 40-41 0.019927993663761082 42-43 0.008664800341003738 44-45 0.003234651839392452 46-47 0.004657448981906264 48-49 0.008440295369800049 50-51 0.006480628498222227 52-53 0.010157710426373886 54-55 0.0030128661167537862 56-57 0.015438109306018511 58-59 0.01223128837306231 60-61 0.01215883570683095 62-63 0.004301935805621594 64-65 0.00581934759777993 66-67 2.8443649658228636E-4 68-69 2.3287477044898764E-4 70-71 6.56098421967513E-4 72-73 8.687370088524736E-5 74-75 0.001737880996860859 76-77 0.0020995004526184204 78-79 0.0017760082168172524 80-81 2.981839861253615E-4 82-83 0.002684045363348913 84-85 0.004027525939089137 86-87 0.0012842848128126025 88-89 0.06669719010545079 90-91 8.640272349375455E-4 92-93 1.5319430031414023E-5 94-95 4.816859090588522E-4 96-97 0.010488510622845695 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 469.0 20-21 1701.0 22-23 3351.0 24-25 6270.0 26-27 8307.0 28-29 12758.0 30-31 28585.0 32-33 37033.0 34-35 52781.0 36-37 80189.0 38-39 90888.0 40-41 96442.0 42-43 111545.0 44-45 132345.0 46-47 133939.0 48-49 122427.0 50-51 113077.0 52-53 111296.0 54-55 121101.0 56-57 128763.0 58-59 130332.0 60-61 131408.0 62-63 125350.0 64-65 132760.0 66-67 143072.0 68-69 148082.0 70-71 150258.0 72-73 146114.0 74-75 147939.0 76-77 148851.0 78-79 162717.0 80-81 170064.0 82-83 165670.0 84-85 167108.0 86-87 179829.0 88-89 194996.0 90-91 216798.0 92-93 231840.0 94-95 280478.0 96-97 381648.0 98-99 1192588.0 100-101 7760607.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.85130965848101 #Duplication Level Percentage of deduplicated Percentage of total 1 90.51291906626864 77.70652642851259 2 6.673576123735796 11.458705006565744 3 1.5618762378329225 4.022673616272527 4 0.5541165806895539 1.9028653662271033 5 0.2667579670276197 1.1450760415577526 6 0.1408590017054207 0.7255757864157947 7 0.08182748751974254 0.49174978787430357 8 0.04877109023432389 0.3349649576070928 9 0.03361805554332775 0.259753868690962 >10 0.1221055431334732 1.6823450195324607 >50 0.0028799028802173094 0.16191544656992057 >100 6.513728117019524E-4 0.08459461654103914 >500 4.157061730177281E-5 0.023254057632774754 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.157997654400416E-5 0.0 0.0 0.0 3 0.0 2.157997654400416E-5 0.0 7.193325514668054E-6 0.0 4 0.0 8.631990617601664E-5 0.0 7.193325514668054E-6 0.0 5 0.0 9.35132316906847E-5 0.0 7.193325514668054E-6 0.0 6 7.193325514668054E-6 9.35132316906847E-5 0.0 7.193325514668054E-6 0.0 7 7.193325514668054E-6 9.35132316906847E-5 0.0 2.157997654400416E-5 0.0 8 7.193325514668054E-6 9.35132316906847E-5 0.0 2.157997654400416E-5 0.0 9 7.193325514668054E-6 2.2299309095470966E-4 0.0 6.473992963201249E-5 0.0 10-11 1.4386651029336109E-5 2.2299309095470966E-4 0.0 6.833659238934651E-5 0.0 12-13 2.157997654400416E-5 2.2299309095470966E-4 0.0 7.193325514668053E-5 0.0 14-15 2.517663930133819E-5 2.7334636955738604E-4 0.0 7.552991790401456E-5 1.0789988272002082E-5 16-17 2.8773302058672217E-5 2.7334636955738604E-4 0.0 9.710989444801872E-5 1.4386651029336109E-5 18-19 2.8773302058672217E-5 2.985230088587243E-4 0.0 1.2228653374935693E-4 2.157997654400416E-5 20-21 2.8773302058672217E-5 3.2729631091739646E-4 0.0 1.438665102933611E-4 2.157997654400416E-5 22-23 3.596662757334027E-5 3.740529267627388E-4 0.0 1.9421978889603745E-4 2.157997654400416E-5 24-25 5.3949941360010404E-5 4.1361621709341313E-4 0.0 2.66153044042718E-4 2.8773302058672217E-5 26-27 5.7546604117344434E-5 4.387928563947513E-4 0.0 5.574827273867742E-4 2.8773302058672217E-5 28-29 5.7546604117344434E-5 4.423895191520853E-4 0.0 0.00236660409432579 2.8773302058672217E-5 30-31 7.193325514668053E-5 4.675661584534235E-4 0.0 0.006747339332758635 2.8773302058672217E-5 32-33 7.193325514668053E-5 4.783561467254256E-4 0.0 0.017375477780680684 2.8773302058672217E-5 34-35 7.552991790401456E-5 5.574827273867742E-4 0.0 0.030747869912448593 4.315995308800832E-5 36-37 7.91265806613486E-5 6.438026335627908E-4 0.0 0.047368048514089135 4.315995308800832E-5 38-39 7.91265806613486E-5 6.653826101067949E-4 0.0 0.06941918787930405 5.035327860267638E-5 40-41 7.91265806613486E-5 7.624925045548138E-4 0.0 0.09052080827658279 5.035327860267638E-5 42-43 7.91265806613486E-5 7.768791555841498E-4 0.0 0.10760495637391942 5.035327860267638E-5 44-45 8.631990617601664E-5 8.308290969441602E-4 0.0 0.12540484035996552 5.3949941360010404E-5 46-47 9.710989444801872E-5 8.703923872748345E-4 0.0 0.1421580954836274 5.7546604117344434E-5 48-49 1.0430321996268678E-4 8.703923872748345E-4 0.0 0.1549370382604352 5.7546604117344434E-5 50-51 1.0789988272002081E-4 9.603089562081851E-4 0.0 0.1656658832655626 5.7546604117344434E-5 52-53 1.0789988272002081E-4 9.639056189655192E-4 0.0 0.17481938998297772 5.7546604117344434E-5 54-55 1.0789988272002081E-4 9.639056189655192E-4 0.0 0.1839189467590328 6.114326687467846E-5 56-57 1.1149654547735485E-4 9.926789210241915E-4 0.0 0.19207258122990906 6.473992963201249E-5 58-59 1.1509320823468887E-4 0.0010034689092961934 0.0 0.19965074965961183 6.833659238934651E-5 60-61 1.1509320823468887E-4 0.0010250488858401976 0.0 0.20727567470515998 7.193325514668053E-5 62-63 1.1509320823468887E-4 0.0010646121761708719 0.0 0.21490779307622276 7.91265806613486E-5 64-65 1.1509320823468887E-4 0.0012084786864642331 0.0 0.2223600783094189 7.91265806613486E-5 66-67 1.1509320823468887E-4 0.001212075349221567 0.0 0.23026194638728176 7.91265806613486E-5 68-69 1.1509320823468887E-4 0.0012624286278242434 0.0 0.2375847517612138 7.91265806613486E-5 70-71 1.1509320823468887E-4 0.0012840086043682478 0.0 0.24458745414974314 9.35132316906847E-5 72-73 1.1509320823468887E-4 0.0012983952553975837 0.0 0.2500220115760749 1.0789988272002081E-4 74-75 1.1509320823468887E-4 0.001341555208485592 0.0 0.2548019763805718 1.0789988272002081E-4 76-77 1.1509320823468887E-4 0.0013883118243309344 0.0 0.2589129619122046 1.0789988272002081E-4 78-79 1.1509320823468887E-4 0.0014098918008749386 0.0 0.262675071156376 1.0789988272002081E-4 80-81 1.1509320823468887E-4 0.0014098918008749386 0.0 0.2649265820424671 1.1149654547735485E-4 82-83 1.2228653374935693E-4 0.0014134884636322726 0.0 0.26623217062337934 1.1509320823468887E-4 84-85 1.2947985926402498E-4 0.0014170851263896067 0.0 0.26754495252980626 1.1509320823468887E-4 86-87 1.2947985926402498E-4 0.0014386651029336108 0.0 0.26795856874689966 1.1868987099202289E-4 88-89 1.2947985926402498E-4 0.001489018381536287 0.0 0.2680448886530757 1.3667318477869302E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14805 0.0 48.886253 1 GTATCAA 26350 0.0 34.593056 1 TCAACGC 33860 0.0 26.287209 4 ATCAACG 34160 0.0 26.105534 3 CAACGCA 34985 0.0 25.393873 5 TATCAAC 36230 0.0 24.892788 2 AACGCAG 35995 0.0 24.728014 6 ACGCAGA 41785 0.0 21.321646 7 CGCAGAG 42550 0.0 20.918564 8 GTACATG 35590 0.0 18.459442 1 AGAGTAC 45240 0.0 18.44448 10-11 TACATGG 35335 0.0 18.283573 2 ACATGGG 35435 0.0 17.49663 3 GCAGAGT 50315 0.0 17.406404 9 GAGTACT 29500 0.0 17.20779 12-13 CAGAGTA 48945 0.0 16.932428 9 AGTACTT 32540 0.0 16.658693 12-13 CATGGGG 26740 0.0 15.347358 4 GTACTTT 33795 0.0 15.015425 14-15 TATACCG 1155 0.0 14.183489 5 >>END_MODULE