##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139791_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11452202 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.511477443377267 31.0 18.0 33.0 18.0 33.0 2 30.456514389110495 32.0 29.0 33.0 25.0 33.0 3 31.972782876166523 33.0 32.0 33.0 29.0 34.0 4 31.61457656789498 33.0 31.0 33.0 29.0 34.0 5 32.58786973893754 33.0 33.0 33.0 32.0 34.0 6 36.1131977937518 38.0 36.0 38.0 33.0 38.0 7 36.829595391349194 38.0 37.0 38.0 35.0 38.0 8 37.03617906844465 38.0 38.0 38.0 36.0 38.0 9 37.12477338419284 38.0 38.0 38.0 36.0 38.0 10-11 37.18525812765091 38.0 38.0 38.0 36.0 38.0 12-13 37.20680140814841 38.0 38.0 38.0 36.0 38.0 14-15 37.2165975591419 38.0 38.0 38.0 36.0 38.0 16-17 37.183247859232665 38.0 38.0 38.0 36.0 38.0 18-19 37.20714282720476 38.0 38.0 38.0 36.0 38.0 20-21 37.22829433019553 38.0 38.0 38.0 36.0 38.0 22-23 37.233406285151574 38.0 38.0 38.0 36.0 38.0 24-25 37.238068654420815 38.0 38.0 38.0 36.0 38.0 26-27 37.208774749560334 38.0 38.0 38.0 36.0 38.0 28-29 37.18262793579839 38.0 38.0 38.0 36.0 38.0 30-31 37.184927045863105 38.0 38.0 38.0 36.0 38.0 32-33 37.176714627907444 38.0 38.0 38.0 36.0 38.0 34-35 37.157347720962036 38.0 38.0 38.0 36.0 38.0 36-37 37.140171961028486 38.0 38.0 38.0 36.0 38.0 38-39 37.125179438020794 38.0 38.0 38.0 36.0 38.0 40-41 37.10456924979009 38.0 38.0 38.0 36.0 38.0 42-43 37.08423607353549 38.0 38.0 38.0 36.0 38.0 44-45 37.04306271561036 38.0 38.0 38.0 36.0 38.0 46-47 37.02464492328839 38.0 38.0 38.0 36.0 38.0 48-49 36.9970499865441 38.0 38.0 38.0 36.0 38.0 50-51 36.96049274555027 38.0 38.0 38.0 36.0 38.0 52-53 36.93737229159692 38.0 38.0 38.0 36.0 38.0 54-55 36.9080135550822 38.0 38.0 38.0 36.0 38.0 56-57 36.90931007363291 38.0 38.0 38.0 36.0 38.0 58-59 36.89334006397576 38.0 38.0 38.0 35.0 38.0 60-61 36.90049900932197 38.0 38.0 38.0 35.5 38.0 62-63 36.88783201038606 38.0 38.0 38.0 35.0 38.0 64-65 36.87941975659213 38.0 38.0 38.0 35.0 38.0 66-67 36.866979916483444 38.0 38.0 38.0 35.0 38.0 68-69 36.870525765651344 38.0 38.0 38.0 35.0 38.0 70-71 36.847334753224615 38.0 38.0 38.0 35.0 38.0 72-73 36.83259218706168 38.0 38.0 38.0 35.0 38.0 74-75 36.8450659063121 38.0 38.0 38.0 35.0 38.0 76-77 36.82399882953102 38.0 38.0 38.0 35.0 38.0 78-79 36.79838049517091 38.0 38.0 38.0 35.0 38.0 80-81 36.78820948998546 38.0 38.0 38.0 35.0 38.0 82-83 36.73350044374688 38.0 38.0 38.0 35.0 38.0 84-85 36.73381721271964 38.0 38.0 38.0 35.0 38.0 86-87 36.720866314669024 38.0 38.0 38.0 35.0 38.0 88-89 36.69448109868724 38.0 38.0 38.0 34.5 38.0 90-91 36.67289677873938 38.0 38.0 38.0 34.0 38.0 92-93 36.67128370640249 38.0 38.0 38.0 34.0 38.0 94-95 36.61708274514537 38.0 38.0 38.0 34.0 38.0 96-97 36.580813668518154 38.0 38.0 38.0 34.0 38.0 98-99 36.60534086922654 38.0 38.0 38.0 34.0 38.0 100 34.97464947265108 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 8.0 18 27.0 19 61.0 20 163.0 21 311.0 22 982.0 23 2694.0 24 6809.0 25 13726.0 26 24163.0 27 39489.0 28 60178.0 29 86910.0 30 118670.0 31 157219.0 32 207261.0 33 278625.0 34 407047.0 35 696000.0 36 1855381.0 37 7496478.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.38405906567139 21.831260049377406 14.31444363276163 24.470237252189577 2 13.821273738993087 21.624086244750927 41.295917202747766 23.25872281350822 3 18.581806363527296 25.457165355623314 30.292113254726033 25.66891502612336 4 12.837662136941 17.815752813301756 38.951626944757 30.394958105000242 5 13.426113669665327 37.79133025608246 35.32970420318937 13.45285187106284 6 30.30726688702619 38.067325789276715 18.444046616744355 13.181360706952747 7 26.730475064970037 32.64237742226342 22.7656829664723 17.861464546294243 8 24.222040442527994 37.339116093132134 20.76849500209654 17.670348462243332 9 25.011504337768404 17.256733683181626 21.356661365211686 36.37510061383828 10-11 24.12705434291152 27.07939486222824 28.777286673776796 20.016264121083438 12-13 24.835765209171125 24.35862552895941 29.098500008993906 21.70710925287556 14-15 21.81394896806745 25.993337351192373 26.74434575988094 25.448367920859237 16-17 21.534373913418573 29.140033506220025 27.417884350974596 21.907708229386802 18-19 21.50050269808374 28.289987375353665 29.21640309872285 20.993106827839746 20-21 22.264635787010693 27.362164622243583 29.20472572200835 21.168473868737376 22-23 21.919149174730855 27.316258484142647 29.072240019742118 21.692352321384377 24-25 21.751063844001305 27.38670258420531 29.15306546926789 21.709168102525496 26-27 21.74218682348529 27.569811023152358 29.02185462786661 21.66614752549574 28-29 21.628368065457884 27.632502033415857 29.06937934963278 21.66975055149348 30-31 21.93349834560754 27.434634163871017 29.009727878386265 21.62213961213518 32-33 21.68802330957434 27.53335077233264 29.021941475646777 21.756684442446243 34-35 21.86636540300942 27.611296140562708 28.978320367615872 21.544018088812 36-37 21.8293810359584 27.526540411093425 28.963284441419713 21.680794111528463 38-39 21.671035040463966 27.657179429309853 29.01016426776947 21.661621262456705 40-41 21.98887860647831 27.501215673101647 28.85942026623041 21.65048545418963 42-43 21.841211831094 27.55237708038947 28.74171704149349 21.864694047023036 44-45 21.93532914786228 27.622624465422934 28.61489154143192 21.827154845282863 46-47 21.918630743336156 27.69836418501603 28.433965547875246 21.94903952377257 48-49 21.87835702965362 27.74868641832547 28.461925904800378 21.91103064722053 50-51 21.92264081664256 27.864055091330115 28.30891137300904 21.904392719018286 52-53 22.053581821617797 27.83032311497654 28.18398643668734 21.932108626718318 54-55 22.01316769411005 27.760337433641645 28.26446271697695 21.962032155271356 56-57 22.014342676588196 27.818672054417444 28.251571117762488 21.915414151231875 58-59 21.96200029936764 27.90537602883829 28.25071016524475 21.88191350654932 60-61 22.06282797664532 27.84897597789956 28.27717583827501 21.81102020718011 62-63 22.023498448375303 27.841247449210215 28.259961314532383 21.8752927878821 64-65 21.989618534239153 27.854766665497365 28.221630749562486 21.933984050700996 66-67 22.03881500967828 27.81733353645743 28.12382263886788 22.020028814996415 68-69 22.027075876146462 27.82802842031321 28.162105766677527 21.9827899368628 70-71 21.9999700003 27.642323576764234 28.205167948320515 22.152538474615255 72-73 21.998863251724476 27.698986554968297 28.21647988430164 22.085670309005586 74-75 21.960927498533845 27.805705646552752 28.104388977274443 22.12897787763896 76-77 22.043080041117342 27.760865590247086 28.05322844812814 22.142825920507427 78-79 22.00775541218917 27.762400903469175 28.03466978040173 22.195173903939917 80-81 22.04830509457848 27.791401257074323 28.051357102367486 22.108936545979713 82-83 22.112054342985022 27.753765154025228 28.079709332636032 22.054471170353718 84-85 22.20459870533505 27.757794897782507 27.99682478633866 22.040781610543778 86-87 22.032825261564874 27.810136180292673 28.05519958358665 22.101838974555807 88-89 22.096200392766438 27.788819306560903 28.017066333495745 22.097913967176915 90-91 22.146077327051806 27.80314561414387 28.006533205348124 22.0442438534562 92-93 22.13421990561199 27.799464796340462 28.02734218832128 22.038973109726268 94-95 22.050956903721396 27.861353277139596 28.035357125659772 22.052332693479244 96-97 22.171413760128956 27.987217076065452 28.045258288506624 21.796110875298965 98-99 23.15188403281065 29.875655866454597 28.329735254357796 18.642724846376954 100 22.080483675811536 30.80216236426802 22.227107967616465 24.890245992303978 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1264.0 1 1287.0 2 1870.5 3 2691.0 4 3581.5 5 5129.5 6 6577.0 7 8538.5 8 10713.0 9 11832.5 10 12003.0 11 12182.0 12 13766.5 13 17489.5 14 24842.0 15 33628.5 16 39790.0 17 42563.5 18 42247.5 19 39580.5 20 36322.5 21 34169.0 22 34880.0 23 40203.5 24 50088.5 25 64848.0 26 84330.5 27 106670.5 28 131212.5 29 159109.0 30 187734.5 31 216957.0 32 247323.5 33 276038.0 34 305700.5 35 333714.5 36 360337.5 37 387203.0 38 409795.0 39 427175.5 40 445149.5 41 460921.5 42 470190.5 43 480305.5 44 487228.0 45 492532.5 46 495990.0 47 495480.0 48 491682.5 49 478214.5 50 461616.5 51 443131.5 52 419953.0 53 394576.0 54 367148.0 55 336254.5 56 305346.0 57 273665.0 58 239291.0 59 203928.5 60 167903.0 61 135308.5 62 106470.5 63 81768.0 64 61863.5 65 46117.5 66 33920.0 67 25596.5 68 19541.5 69 14153.5 70 10146.0 71 7316.0 72 5240.5 73 3576.0 74 2352.5 75 1518.5 76 971.0 77 601.5 78 356.5 79 219.5 80 134.0 81 83.5 82 60.0 83 37.5 84 22.0 85 12.5 86 11.5 87 12.0 88 8.0 89 4.0 90 2.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003676148918784353 3 0.0 4 0.0 5 0.0036848808639596124 6 6.985556140207796E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 8.732359215376568E-6 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 1.313837042689456E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 4.5488076369749465E-6 48-49 2.751068847561212E-4 50-51 0.0014690657711833048 52-53 0.0037868799774908595 54-55 0.005285241385126825 56-57 0.005949239951544857 58-59 0.007471734120482902 60-61 0.007224415184550229 62-63 0.005114612767736442 64-65 0.003015737521509054 66-67 9.284931558264026E-4 68-69 4.1629402569505486E-4 70-71 1.3999840401819418E-4 72-73 4.2871234884233033E-4 74-75 5.085962428368034E-6 76-77 2.1034731265660294E-4 78-79 1.5532753243678972E-4 80-81 4.181117217516665E-5 82-83 2.6375575963452314E-5 84-85 1.0645065982643112E-4 86-87 1.5576267097101588E-4 88-89 3.2536212397695984E-5 90-91 5.477568071518635E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 99.0 20-21 337.0 22-23 560.0 24-25 854.0 26-27 2249.0 28-29 6471.0 30-31 19260.0 32-33 23845.0 34-35 34168.0 36-37 55736.0 38-39 66163.0 40-41 65589.0 42-43 74312.0 44-45 87994.0 46-47 88490.0 48-49 83373.0 50-51 76898.0 52-53 74926.0 54-55 80478.0 56-57 83158.0 58-59 83633.0 60-61 80878.0 62-63 79523.0 64-65 83395.0 66-67 88640.0 68-69 88850.0 70-71 88024.0 72-73 82829.0 74-75 83953.0 76-77 87996.0 78-79 90057.0 80-81 89539.0 82-83 84956.0 84-85 84418.0 86-87 87419.0 88-89 91371.0 90-91 93053.0 92-93 92364.0 94-95 111304.0 96-97 354055.0 98-99 798305.0 100-101 7702680.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.17289729654827 #Duplication Level Percentage of deduplicated Percentage of total 1 87.42033841154738 70.96162151510029 2 8.271572730587476 13.428550474818133 3 2.293245535796098 5.584481530588334 4 0.9011229833267788 2.9258705350857515 5 0.42710051136876925 1.7334492972320175 6 0.21872783383156694 1.0652863194903754 7 0.14102330499171703 0.8013089176758714 8 0.08433181556505374 0.5476366242954847 9 0.0576174936319162 0.4209281003761252 >10 0.18082253260884296 2.2211575921524562 >50 0.003145263563668922 0.1713764015805464 >100 9.315824954376166E-4 0.12961442372106163 >500 2.0000685283064833E-5 0.008718267883480868 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.731945175259745E-6 0.0 0.0 0.0 3 0.0 8.731945175259745E-6 0.0 0.0 0.0 4 0.0 1.746389035051949E-5 0.0 1.746389035051949E-5 0.0 5 0.0 1.746389035051949E-5 0.0 2.6195835525779236E-5 0.0 6 0.0 1.746389035051949E-5 0.0 2.6195835525779236E-5 0.0 7 0.0 1.746389035051949E-5 0.0 2.6195835525779236E-5 0.0 8 0.0 1.746389035051949E-5 0.0 2.6195835525779236E-5 0.0 9 0.0 3.492778070103898E-5 0.0 5.239167105155847E-5 0.0 10-11 0.0 3.492778070103898E-5 0.0 7.85875065773377E-5 0.0 12-13 0.0 3.492778070103898E-5 0.0 7.85875065773377E-5 0.0 14-15 0.0 6.985556140207796E-5 0.0 8.731945175259744E-5 0.0 16-17 0.0 6.985556140207796E-5 0.0 8.731945175259744E-5 0.0 18-19 0.0 7.858750657733769E-5 0.0 1.0041736951548707E-4 0.0 20-21 0.0 8.731945175259744E-5 0.0 1.0478334210311694E-4 0.0 22-23 0.0 1.0041736951548707E-4 0.0 1.0478334210311694E-4 0.0 24-25 4.365972587629872E-6 1.1351528727837668E-4 0.0 1.2224723245363641E-4 0.0 26-27 8.731945175259745E-6 1.2224723245363641E-4 0.0 1.6154098574230527E-4 0.0 28-29 8.731945175259745E-6 1.2661320504126628E-4 0.0 3.318139166598703E-4 0.0 30-31 8.731945175259745E-6 1.4844306797941566E-4 0.0 9.736118870414615E-4 0.0 32-33 8.731945175259745E-6 1.4844306797941566E-4 0.0 0.002300867553680943 0.0 34-35 8.731945175259745E-6 1.6590695832993516E-4 0.0 0.004221895492238087 0.0 36-37 8.731945175259745E-6 1.8337084868045464E-4 0.0 0.006885138770692309 0.0 38-39 8.731945175259745E-6 1.9210279385571439E-4 0.0 0.011002250920827277 0.0 40-41 8.731945175259745E-6 2.0083473903097413E-4 0.0 0.015665109644415982 0.0 42-43 8.731945175259745E-6 2.05200711618604E-4 0.0 0.020022350286870598 0.0 44-45 8.731945175259745E-6 2.40128492319643E-4 0.0 0.02509124446110888 0.0 46-47 8.731945175259745E-6 2.706903004330521E-4 0.0 0.03050941644235755 0.0 48-49 8.731945175259745E-6 2.706903004330521E-4 0.0 0.03593632036878148 0.0 50-51 8.731945175259745E-6 3.1435002630935077E-4 0.0 0.04162518265046321 0.0 52-53 8.731945175259745E-6 3.2308197148461055E-4 0.0 0.04724855534333048 0.0 54-55 8.731945175259745E-6 3.2744794407224044E-4 0.0 0.05229998562721824 0.0 56-57 8.731945175259745E-6 3.4054586183513005E-4 0.0 0.057098189501023466 0.0 58-59 8.731945175259745E-6 3.4054586183513005E-4 0.0 0.061861465594127654 0.0 60-61 8.731945175259745E-6 3.4054586183513005E-4 0.0 0.06662910765981948 0.0 62-63 8.731945175259745E-6 3.4927780701038977E-4 0.0 0.0711784510961298 0.0 64-65 8.731945175259745E-6 3.8420558771142877E-4 0.0 0.07558371743704835 0.0 66-67 8.731945175259745E-6 4.0166947806194827E-4 0.0 0.08043867895449278 0.0 68-69 8.731945175259745E-6 4.147673958248379E-4 0.0 0.0848133834872979 0.0 70-71 8.731945175259745E-6 4.278653135877275E-4 0.0 0.08921864982821645 0.0 72-73 8.731945175259745E-6 4.322312861753573E-4 0.0 0.09285550499371212 0.0 74-75 8.731945175259745E-6 4.409632313506171E-4 0.0 0.09531791353313537 0.0 76-77 8.731945175259745E-6 4.6279309428876644E-4 0.0 0.0980553783455793 0.0 78-79 8.731945175259745E-6 4.715250394640262E-4 0.0 0.09979740140804362 0.0 80-81 8.731945175259745E-6 4.715250394640262E-4 0.0 0.10035624589926025 0.0 82-83 8.731945175259745E-6 4.758910120516561E-4 0.0 0.10072735356920878 0.0 84-85 8.731945175259745E-6 4.889889298145457E-4 0.0 0.10088016260977584 0.0 86-87 8.731945175259745E-6 4.889889298145457E-4 0.0 0.10095875011635316 0.0 88 8.731945175259745E-6 5.239167105155847E-4 0.0 0.10096748206152843 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12805 0.0 45.40189 1 GTATCAA 22930 0.0 35.818398 1 TCAACGC 26525 0.0 30.541676 4 ATCAACG 26865 0.0 30.13914 3 CAACGCA 27385 0.0 29.56684 5 AACGCAG 28400 0.0 28.509142 6 TATCAAC 28785 0.0 28.383383 2 ACGCAGA 33565 0.0 24.160572 7 CGCAGAG 33910 0.0 23.92744 8 GTGGTAT 7015 0.0 22.9869 1 TGGTATC 7285 0.0 20.718313 2 GCAGAGT 40865 0.0 19.865644 9 GAGTACT 24650 0.0 18.568676 12-13 GTACATG 28985 0.0 18.544432 1 TACATGG 29145 0.0 18.486889 2 AGAGTAC 36505 0.0 18.103966 10-11 ACATGGG 29555 0.0 17.589872 3 CAGAGTA 39630 0.0 17.457584 10-11 GTACTTT 27495 0.0 16.60054 14-15 CATGGGG 21760 0.0 16.105198 4 >>END_MODULE