##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139789_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5475233 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.289471516554638 31.0 18.0 33.0 18.0 33.0 2 29.425312310909874 31.0 27.0 33.0 18.0 33.0 3 31.282234746904834 33.0 32.0 33.0 27.0 33.0 4 31.71874219782062 33.0 31.0 33.0 29.0 33.0 5 32.403282198218776 33.0 33.0 33.0 32.0 34.0 6 36.041395498602526 38.0 36.0 38.0 33.0 38.0 7 36.72891016692805 38.0 37.0 38.0 34.0 38.0 8 36.62594833863691 38.0 37.0 38.0 34.0 38.0 9 36.938357874450276 38.0 38.0 38.0 35.0 38.0 10-11 37.071916756784596 38.0 38.0 38.0 36.0 38.0 12-13 37.11527052821314 38.0 38.0 38.0 36.0 38.0 14-15 37.09866356372413 38.0 38.0 38.0 36.0 38.0 16-17 37.041654939616265 38.0 38.0 38.0 36.0 38.0 18-19 37.081909938809915 38.0 38.0 38.0 36.0 38.0 20-21 37.117965756544145 38.0 38.0 38.0 36.0 38.0 22-23 37.126410391423946 38.0 38.0 38.0 36.0 38.0 24-25 37.13165362363996 38.0 38.0 38.0 36.0 38.0 26-27 37.10371261735937 38.0 38.0 38.0 36.0 38.0 28-29 37.078273882790015 38.0 38.0 38.0 36.0 38.0 30-31 37.080845796443455 38.0 38.0 38.0 36.0 38.0 32-33 37.07419160161404 38.0 38.0 38.0 36.0 38.0 34-35 37.05356566672911 38.0 38.0 38.0 36.0 38.0 36-37 37.035881556277765 38.0 38.0 38.0 36.0 38.0 38-39 37.01680196184277 38.0 38.0 38.0 36.0 38.0 40-41 36.99342363983189 38.0 38.0 38.0 36.0 38.0 42-43 36.96637596054222 38.0 38.0 38.0 36.0 38.0 44-45 36.91546277366628 38.0 38.0 38.0 35.5 38.0 46-47 36.88729856664541 38.0 38.0 38.0 35.0 38.0 48-49 36.850855612156984 38.0 38.0 38.0 35.0 38.0 50-51 36.804127179900135 38.0 38.0 38.0 35.0 38.0 52-53 36.77226692330646 38.0 38.0 38.0 35.0 38.0 54-55 36.73680618539251 38.0 38.0 38.0 35.0 38.0 56-57 36.73234744176121 38.0 38.0 38.0 35.0 38.0 58-59 36.71012381637662 38.0 38.0 38.0 35.0 38.0 60-61 36.714791991083544 38.0 38.0 38.0 35.0 38.0 62-63 36.69681523344997 38.0 38.0 38.0 34.5 38.0 64-65 36.68525250790826 38.0 38.0 38.0 34.0 38.0 66-67 36.666936730816985 38.0 38.0 38.0 34.0 38.0 68-69 36.66810189054929 38.0 38.0 38.0 34.0 38.0 70-71 36.6385712630464 38.0 38.0 38.0 34.0 38.0 72-73 36.61943600326363 38.0 38.0 38.0 34.0 38.0 74-75 36.63217551334712 38.0 38.0 38.0 34.0 38.0 76-77 36.6035125678317 38.0 38.0 38.0 34.0 38.0 78-79 36.57068130681445 38.0 38.0 38.0 34.0 38.0 80-81 36.55619159912128 38.0 38.0 38.0 34.0 38.0 82-83 36.488059065224476 38.0 38.0 38.0 34.0 38.0 84-85 36.48362247860638 38.0 38.0 38.0 34.0 38.0 86-87 36.46279942162216 38.0 38.0 38.0 34.0 38.0 88-89 36.42930852855187 38.0 38.0 38.0 34.0 38.0 90-91 36.399428942382045 38.0 38.0 38.0 34.0 38.0 92-93 36.399292366258265 38.0 38.0 38.0 34.0 38.0 94-95 36.34063336440194 38.0 37.0 38.0 34.0 38.0 96-97 36.30207716235144 38.0 37.0 38.0 33.0 38.0 98-99 36.33147444113543 38.0 37.0 38.0 33.5 38.0 100 34.58304003203701 38.0 34.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 6.0 19 30.0 20 95.0 21 276.0 22 785.0 23 1991.0 24 4672.0 25 8854.0 26 14952.0 27 23650.0 28 35352.0 29 49186.0 30 67463.0 31 88411.0 32 116592.0 33 154925.0 34 224159.0 35 380395.0 36 986876.0 37 3316561.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.315404842131834 17.79157160982921 14.397012875981716 22.496010672057242 2 14.506205140877984 19.42153296303582 43.52393043579272 22.548331460293472 3 18.26462910345551 25.74416467755801 29.999965298280458 25.991240920706023 4 12.321064692589339 18.153437488413733 38.60180927460073 30.923688544396192 5 13.774988173710387 36.92299122023565 35.612473950199906 13.689546655854059 6 30.382778440357754 37.41039189221274 18.686904477072197 13.519925190357299 7 27.14662554086739 32.66054613566217 22.354646825075754 17.838181498394682 8 24.475013209483503 36.90257565294481 20.54805704159074 18.074354095980937 9 25.36675608143069 17.55508852317335 21.27447361600867 35.80368177938729 10-11 24.44196438763428 26.861706159354316 28.36821738910472 20.328112063906687 12-13 25.2767781754676 24.207234651018506 28.76080342151649 21.755183751997404 14-15 22.165138908243723 25.788016692622946 26.6595960391092 25.387248360024127 16-17 21.703724754727332 28.96593624417445 27.284108274478914 22.046230726619306 18-19 21.660795074839736 28.037939207336017 29.154467033640397 21.14679868418385 20-21 22.469321357580725 27.048337160686554 29.204695909435195 21.277645572297523 22-23 22.241066491899 26.915352575676792 29.084331059782855 21.759249872641355 24-25 22.007317230895023 27.04743997389939 29.113914685647334 21.83132810955825 26-27 21.90362531656763 27.180825878964765 29.17122244823629 21.74432635623132 28-29 21.783174330059687 27.36682207845307 29.10250652910448 21.747497062382763 30-31 22.117176248374655 27.156066072687935 28.975143858464325 21.751613820473086 32-33 21.85623654825544 27.204496747305758 29.074748988557058 21.86451771588175 34-35 22.058303920174545 27.28318985305462 28.9775879211634 21.68091830560744 36-37 21.983060712970552 27.212255471123402 28.97393984883615 21.830743967069896 38-39 21.870861029785736 27.341187756248953 29.06681132369975 21.72113989026556 40-41 22.176182681589864 27.250197922481362 28.84619123288288 21.727428163045897 42-43 21.997094056285285 27.297733324615315 28.68958551342252 22.01558710567688 44-45 22.13770742753461 27.337376219605964 28.63325125330636 21.891665099553066 46-47 22.158714282121714 27.43030562418536 28.356150798828768 22.054829294864163 48-49 22.068796503893953 27.481568642749888 28.361599974909797 22.088034878446365 50-51 22.03418002238582 27.62366248202928 28.279232025644983 22.062925469939916 52-53 22.2024561345688 27.605651687974557 28.094115959252473 22.097776218204164 54-55 22.145626048427406 27.486616375649447 28.139091540000035 22.228666035923112 56-57 22.15486862396481 27.60592151385438 28.120705892872145 22.118503969308666 58-59 22.211477934510214 27.626203041304255 28.1515624195828 22.010756604602737 60-61 22.280899234884636 27.530872813778057 28.223943305290405 21.964284646046902 62-63 22.212043803682707 27.562019403593542 28.206573363938876 22.019363428784875 64-65 22.11783009047914 27.58082055492131 28.15746842473426 22.143880929865293 66-67 22.186949051323705 27.576753201489513 28.04766718776433 22.18863055942246 68-69 22.183332746035923 27.509764119100627 28.096859486166476 22.210043648696974 70-71 22.193602705984123 27.381443055489807 28.137575600565285 22.287378637960785 72-73 22.211021701881297 27.39888620902545 28.156868920703797 22.233223168389458 74-75 22.085202407290073 27.56647097085192 28.05563332400112 22.29269329785689 76-77 22.2115552054199 27.468266273499786 27.97923606874577 22.34094245233455 78-79 22.20333369940104 27.426702434264623 27.994182306427785 22.375781559906553 80-81 22.23394921842264 27.547686024741957 27.936811589444883 22.281553167390516 82-83 22.2538496752291 27.523568250695114 28.001807587378526 22.22077448669726 84-85 22.39665939294619 27.481420802019997 27.943779738146063 22.17814006688775 86-87 22.224228956645558 27.55475862699009 27.96338962500564 22.257622791358713 88-89 22.279883480444884 27.55423627670944 27.881699955543716 22.284180287301965 90-91 22.335607798864814 27.556706095456146 27.89148096811063 22.216205137568405 92-93 22.272240616520957 27.54557424120142 27.970146123518024 22.2120390187596 94-95 22.185705957880135 27.583870316120368 27.99663836169365 22.23378536430585 96-97 22.31378613589696 27.764567329192257 27.966392181745388 21.955254353165397 98-99 23.358982274853357 29.656019861362502 28.188957473475845 18.796040390308292 100 22.20189489681243 30.609650666144884 22.060954598757654 25.127499838285033 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 641.0 1 614.5 2 907.0 3 1344.5 4 1767.5 5 2688.0 6 3579.5 7 4487.5 8 5729.0 9 6532.0 10 6485.0 11 6465.0 12 7240.5 13 8956.5 14 12280.5 15 16410.5 16 19939.5 17 22557.0 18 23437.5 19 22128.5 20 19844.0 21 17761.5 22 17145.0 23 18795.0 24 22949.5 25 29457.5 26 37823.0 27 47303.5 28 57467.0 29 70105.5 30 83207.0 31 95656.5 32 109194.0 33 122530.0 34 135124.0 35 147533.0 36 160809.0 37 174011.0 38 185268.0 39 193848.5 40 202664.5 41 211125.0 42 216815.5 43 222653.0 44 228574.5 45 234577.0 46 239839.5 47 242953.0 48 242811.0 49 236389.0 50 227272.0 51 216988.5 52 204505.5 53 193121.5 54 181302.5 55 166852.5 56 151132.0 57 135174.5 58 118954.5 59 101938.5 60 84615.0 61 68081.5 62 53379.0 63 41058.5 64 31088.0 65 23142.5 66 17015.5 67 12976.5 68 9913.5 69 7232.5 70 5185.5 71 3705.5 72 2676.0 73 1848.5 74 1185.5 75 718.0 76 435.0 77 258.0 78 151.5 79 88.5 80 57.5 81 34.0 82 17.5 83 9.5 84 8.0 85 8.0 86 6.5 87 4.5 88 4.0 89 2.5 90 1.0 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003214475073480891 3 0.0 4 0.0 5 0.0026117609972032244 6 5.479218875251519E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 9.13292469583936E-6 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 3.25100699941807E-4 50-51 0.0014829927216835782 52-53 0.003790007968709849 54-55 0.0059707952016270225 56-57 0.006484494933988333 58-59 0.008313210086694904 60-61 0.007945641048238417 62-63 0.0056026695214175595 64-65 0.0032259121443558273 66-67 0.0010496576740217777 68-69 5.033952468393456E-4 70-71 2.3824602859408116E-4 72-73 5.116962804797372E-4 74-75 0.0 76-77 2.1223156288702416E-4 78-79 1.6055575410950482E-4 80-81 5.3997190634165685E-5 82-83 1.0894329686601728E-5 84-85 1.3187630530068017E-4 86-87 1.441298889689857E-4 88-89 2.237919737232416E-5 90-91 1.1298509444141582E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 104.0 20-21 359.0 22-23 456.0 24-25 692.0 26-27 1696.0 28-29 3024.0 30-31 8252.0 32-33 10766.0 34-35 14614.0 36-37 23974.0 38-39 28946.0 40-41 29157.0 42-43 33706.0 44-45 40338.0 46-47 40417.0 48-49 37676.0 50-51 34678.0 52-53 32669.0 54-55 35461.0 56-57 36798.0 58-59 37024.0 60-61 35852.0 62-63 35145.0 64-65 37315.0 66-67 39107.0 68-69 40051.0 70-71 39515.0 72-73 37541.0 74-75 38233.0 76-77 39975.0 78-79 41497.0 80-81 40711.0 82-83 39636.0 84-85 40178.0 86-87 40904.0 88-89 42307.0 90-91 43671.0 92-93 43966.0 94-95 53065.0 96-97 173461.0 98-99 396605.0 100-101 3725691.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.58200165327636 #Duplication Level Percentage of deduplicated Percentage of total 1 89.51980953451628 76.61284487583958 2 7.435850348389633 12.727499136187944 3 1.7858519631378484 4.585103569853106 4 0.6394338937304923 2.188961302016158 5 0.26260115994203376 1.1236966452155712 6 0.13851744242205308 0.7112759991823057 7 0.07167067970968444 0.4293604160583958 8 0.04157906550651914 0.2846735722336486 9 0.027125192703705954 0.20892854581326029 >10 0.07556135691232128 0.9376571858025666 >50 0.0013850951677678528 0.07738257019871955 >100 5.823473580803337E-4 0.09393052873842768 >500 3.192050362038153E-5 0.018685652860312277 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.8264062917505065E-5 1.8264062917505065E-5 2 0.0 1.8264062917505065E-5 0.0 1.8264062917505065E-5 1.8264062917505065E-5 3 0.0 1.8264062917505065E-5 0.0 1.8264062917505065E-5 1.8264062917505065E-5 4 0.0 3.652812583501013E-5 0.0 1.8264062917505065E-5 1.8264062917505065E-5 5 0.0 3.652812583501013E-5 0.0 1.8264062917505065E-5 1.8264062917505065E-5 6 0.0 3.652812583501013E-5 0.0 1.8264062917505065E-5 1.8264062917505065E-5 7 0.0 3.652812583501013E-5 0.0 1.8264062917505065E-5 1.8264062917505065E-5 8 0.0 3.652812583501013E-5 0.0 1.8264062917505065E-5 1.8264062917505065E-5 9 0.0 7.305625167002026E-5 0.0 1.8264062917505065E-5 1.8264062917505065E-5 10-11 0.0 7.305625167002026E-5 0.0 1.8264062917505065E-5 1.8264062917505065E-5 12-13 0.0 7.305625167002026E-5 0.0 1.8264062917505065E-5 1.8264062917505065E-5 14-15 0.0 1.1871640896378292E-4 0.0 2.7396094376257596E-5 5.479218875251519E-5 16-17 0.0 1.2784844042253545E-4 0.0 3.652812583501013E-5 5.479218875251519E-5 18-19 0.0 1.3698047188128798E-4 0.0 3.652812583501013E-5 5.479218875251519E-5 20-21 0.0 1.4611250334004052E-4 0.0 3.652812583501013E-5 5.479218875251519E-5 22-23 0.0 1.5524453479879305E-4 0.0 8.218828312877278E-5 6.392422021126773E-5 24-25 0.0 1.8264062917505063E-4 0.0 1.4611250334004052E-4 7.305625167002026E-5 26-27 0.0 1.8264062917505063E-4 0.0 2.009046920925557E-4 7.305625167002026E-5 28-29 0.0 1.8264062917505063E-4 0.0 3.0135703813883354E-4 7.305625167002026E-5 30-31 0.0 1.8264062917505063E-4 0.0 7.762226739939652E-4 7.305625167002026E-5 32-33 0.0 1.8264062917505063E-4 0.0 0.0021368953613480923 7.305625167002026E-5 34-35 0.0 2.1916875501006076E-4 0.0 0.003808057118299806 7.305625167002026E-5 36-37 0.0 2.556968808450709E-4 0.0 0.00649287436717305 7.305625167002026E-5 38-39 1.8264062917505065E-5 2.7396094376257597E-4 0.0 0.01017308304505032 7.305625167002026E-5 40-41 1.8264062917505065E-5 3.1048906959758605E-4 0.0 0.014483401893581514 7.305625167002026E-5 42-43 1.8264062917505065E-5 3.1048906959758605E-4 0.0 0.018601948081478907 7.305625167002026E-5 44-45 1.8264062917505065E-5 3.1048906959758605E-4 0.0 0.02262004192333002 7.305625167002026E-5 46-47 1.8264062917505065E-5 3.1048906959758605E-4 0.0 0.027478282659386365 7.305625167002026E-5 48-49 1.8264062917505065E-5 3.1048906959758605E-4 0.0 0.03251916402461777 7.305625167002026E-5 50-51 1.8264062917505065E-5 3.287531325150911E-4 0.0 0.03774268601902421 7.305625167002026E-5 52-53 1.8264062917505065E-5 3.470171954325962E-4 0.0 0.04266485097529183 7.305625167002026E-5 54-55 1.8264062917505065E-5 3.7441328980885376E-4 0.0 0.047550487805724434 7.305625167002026E-5 56-57 1.8264062917505065E-5 3.835453212676063E-4 0.0 0.05183341055987937 8.218828312877278E-5 58-59 1.8264062917505065E-5 3.835453212676063E-4 0.0 0.05604327706236428 9.132031458752531E-5 60-61 1.8264062917505065E-5 3.835453212676063E-4 0.0 0.06073714123216309 1.0045234604627785E-4 62-63 1.8264062917505065E-5 3.835453212676063E-4 0.0 0.06483742335714299 1.2784844042253545E-4 64-65 1.8264062917505065E-5 4.3833751002012153E-4 0.0 0.06886464923045285 1.2784844042253545E-4 66-67 1.8264062917505065E-5 4.3833751002012153E-4 0.0 0.0733941368339941 1.4611250334004052E-4 68-69 1.8264062917505065E-5 4.566015729376266E-4 0.0 0.07782317209148908 1.5524453479879305E-4 70-71 1.8264062917505065E-5 4.7486563585513166E-4 0.0 0.0817042854614589 1.6437656625754556E-4 72-73 1.8264062917505065E-5 4.7486563585513166E-4 0.0 0.08473611990576474 1.6437656625754556E-4 74-75 1.8264062917505065E-5 4.8399766731388417E-4 0.0 0.08734788090296797 1.6437656625754556E-4 76-77 1.8264062917505065E-5 5.113937616901417E-4 0.0 0.0894939082957748 2.009046920925557E-4 78-79 1.8264062917505065E-5 5.296578246076468E-4 0.0 0.09100069348646897 2.3743281792756583E-4 80-81 1.8264062917505065E-5 5.296578246076468E-4 0.0 0.09160340756274665 2.3743281792756583E-4 82-83 1.8264062917505065E-5 5.296578246076468E-4 0.0 0.09196868882109674 2.3743281792756583E-4 84-85 1.8264062917505065E-5 5.296578246076468E-4 0.0 0.09216046148173054 2.3743281792756583E-4 86-87 1.8264062917505065E-5 5.296578246076468E-4 0.0 0.09227917789069433 2.3743281792756583E-4 88 1.8264062917505065E-5 5.66185950442657E-4 0.0 0.09230657398507058 2.3743281792756583E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13130 0.0 31.402018 1 GTATCAA 19220 0.0 27.613337 1 ATCAACG 19390 0.0 26.478945 3 TCAACGC 19380 0.0 26.448006 4 CAACGCA 19770 0.0 25.94813 5 AACGCAG 20380 0.0 25.192213 6 TATCAAC 22065 0.0 23.739555 2 ACGCAGA 22635 0.0 22.720638 7 CGCAGAG 22965 0.0 22.39415 8 GTACATG 16100 0.0 22.14634 1 TACATGG 15670 0.0 21.733574 2 GAGTACT 12975 0.0 21.350336 12-13 ACATGGG 15920 0.0 20.57729 3 GCAGAGT 26165 0.0 19.556225 9 GTACTTT 14475 0.0 19.019049 14-15 CAGAGTA 23780 0.0 18.773384 10-11 AGAGTAC 19990 0.0 18.36558 10-11 CATGGGG 11670 0.0 18.22033 4 AGTACTT 14030 0.0 17.00339 12-13 ACTTTTT 17460 0.0 15.879698 16-17 >>END_MODULE