##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139788_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6682101 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.981098609554092 32.0 25.0 33.0 18.0 33.0 2 28.250389810031304 31.0 25.0 33.0 18.0 33.0 3 31.166396467218917 33.0 31.0 33.0 27.0 33.0 4 31.471011138562556 33.0 31.0 33.0 29.0 34.0 5 32.57324440321989 33.0 33.0 33.0 32.0 34.0 6 36.53291981070026 38.0 37.0 38.0 34.0 38.0 7 36.77172838303402 38.0 37.0 38.0 34.0 38.0 8 37.01970996846651 38.0 38.0 38.0 35.0 38.0 9 37.0989860823714 38.0 38.0 38.0 36.0 38.0 10-11 37.17696657084351 38.0 38.0 38.0 36.0 38.0 12-13 37.201640995848464 38.0 38.0 38.0 36.0 38.0 14-15 37.20777948432686 38.0 38.0 38.0 36.0 38.0 16-17 37.18049098629308 38.0 38.0 38.0 36.0 38.0 18-19 37.20109640665413 38.0 38.0 38.0 36.0 38.0 20-21 37.22315386491932 38.0 38.0 38.0 36.0 38.0 22-23 37.23215601951871 38.0 38.0 38.0 36.0 38.0 24-25 37.23698664831557 38.0 38.0 38.0 36.0 38.0 26-27 37.208158459627 38.0 38.0 38.0 36.0 38.0 28-29 37.17941360300931 38.0 38.0 38.0 36.0 38.0 30-31 37.182454351237396 38.0 38.0 38.0 36.0 38.0 32-33 37.17476503046945 38.0 38.0 38.0 36.0 38.0 34-35 37.15669725034661 38.0 38.0 38.0 36.0 38.0 36-37 37.14232858164351 38.0 38.0 38.0 36.0 38.0 38-39 37.129541847741635 38.0 38.0 38.0 36.0 38.0 40-41 37.11253694119385 38.0 38.0 38.0 36.0 38.0 42-43 37.09337641470195 38.0 38.0 38.0 36.0 38.0 44-45 37.05081124867695 38.0 38.0 38.0 36.0 38.0 46-47 37.034126973152574 38.0 38.0 38.0 36.0 38.0 48-49 37.00867033610396 38.0 38.0 38.0 36.0 38.0 50-51 36.973629331638136 38.0 38.0 38.0 36.0 38.0 52-53 36.95534489210422 38.0 38.0 38.0 36.0 38.0 54-55 36.931299014590095 38.0 38.0 38.0 36.0 38.0 56-57 36.93894312665627 38.0 38.0 38.0 36.0 38.0 58-59 36.92665079755738 38.0 38.0 38.0 36.0 38.0 60-61 36.94003822658307 38.0 38.0 38.0 36.0 38.0 62-63 36.93283058309304 38.0 38.0 38.0 36.0 38.0 64-65 36.926893533704224 38.0 38.0 38.0 36.0 38.0 66-67 36.91925955229311 38.0 38.0 38.0 35.5 38.0 68-69 36.9260761659648 38.0 38.0 38.0 36.0 38.0 70-71 36.90923315739302 38.0 38.0 38.0 35.5 38.0 72-73 36.89630999451184 38.0 38.0 38.0 35.0 38.0 74-75 36.911714548359214 38.0 38.0 38.0 35.0 38.0 76-77 36.893668575420406 38.0 38.0 38.0 35.0 38.0 78-79 36.872128031184204 38.0 38.0 38.0 35.0 38.0 80-81 36.86518722902291 38.0 38.0 38.0 35.0 38.0 82-83 36.81366160624445 38.0 38.0 38.0 35.0 38.0 84-85 36.81780403069923 38.0 38.0 38.0 35.0 38.0 86-87 36.80944970676735 38.0 38.0 38.0 35.0 38.0 88-89 36.78716248370179 38.0 38.0 38.0 35.0 38.0 90-91 36.76684230769996 38.0 38.0 38.0 35.0 38.0 92-93 36.767889566510476 38.0 38.0 38.0 35.0 38.0 94-95 36.71564707281066 38.0 38.0 38.0 34.5 38.0 96-97 36.6811846525664 38.0 38.0 38.0 34.0 38.0 98-99 36.70497558176733 38.0 38.0 38.0 34.0 38.0 100 35.171468514132364 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 18.0 19 42.0 20 89.0 21 179.0 22 503.0 23 1480.0 24 3609.0 25 7455.0 26 13334.0 27 21725.0 28 33606.0 29 48465.0 30 67209.0 31 90119.0 32 118928.0 33 159994.0 34 236424.0 35 417832.0 36 1146518.0 37 4314570.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.14017447506406 21.397132428857333 14.539139710698775 23.923553385379837 2 15.26442251929675 20.08901759624055 41.573357578206554 23.07320230625615 3 18.28040312470584 25.518246431773477 30.010755599174573 26.19059484434611 4 12.812901211759595 17.811284205371933 38.37135954694489 31.004455035923584 5 13.642293478864381 37.08979411453506 35.62346385821199 13.644448548388569 6 30.722794381521723 37.528804593290666 18.32042470518972 13.427976319997892 7 27.247014075363424 32.467767248654276 22.35394227055233 17.93127640542997 8 24.563801115846648 37.15464642033995 20.47579047368485 17.805761990128556 9 25.32209555048629 17.324910234071588 21.113015202853113 36.239979012589004 10-11 24.46289722349303 26.895081352406976 28.411378397303483 20.230643026796514 12-13 25.153480918651184 24.195264333777654 28.77793975278135 21.873314994789812 14-15 22.193985095406372 25.788842461375545 26.36111007600753 25.656062367210552 16-17 21.855977633382075 29.014332468186275 27.080823830708333 22.04886606772331 18-19 21.787151975104834 28.07586266654754 28.89442257756954 21.242562780778083 20-21 22.6041438830273 27.118464099544305 28.912396262808443 21.36499575461995 22-23 22.358641110823843 26.976884276960643 28.78625710568743 21.878217506528085 24-25 22.08649794239607 27.15075550247219 28.832692366697277 21.93005418843446 26-27 22.047003950924417 27.28906262278813 28.80124357946717 21.862689846820288 28-29 21.98688789580628 27.285181753132683 28.840191008444993 21.887739342616044 30-31 22.246650059000917 27.13921594335912 28.75461986551537 21.859514132124595 32-33 22.01764717448435 27.293533056669713 28.736583643065206 21.952236125780733 34-35 22.175218346769615 27.2811654748182 28.70305756929702 21.84055860911517 36-37 22.138070329741648 27.219021939888023 28.681844645504427 21.961063084865902 38-39 22.00999996738828 27.31462264862849 28.8025665880168 21.87281079596643 40-41 22.289427866103235 27.179963530954076 28.64018962073565 21.89041898220704 42-43 22.14448217088318 27.253503670862933 28.52221537774364 22.079798780510252 44-45 22.222658042773144 27.363121118923623 28.364595565048894 22.04962527325434 46-47 22.274454468370397 27.42663171213824 28.122806896046747 22.176106923444618 48-49 22.158023310929885 27.460940333224993 28.195843489245288 22.185192866599834 50-51 22.205021293552832 27.577620759087694 28.073563466017227 22.143794481342248 52-53 22.36151348532213 27.48335204307162 27.963447637643778 22.191686833962468 54-55 22.29849996445869 27.47068962315321 27.9861987636746 22.2446116487135 56-57 22.253184167647376 27.547491364729908 27.99762049260029 22.20170397502243 58-59 22.270469291563273 27.557246121453748 27.994914868492586 22.17736971849039 60-61 22.329557173253555 27.523018408422175 28.05314205890803 22.094282359416237 62-63 22.327624356559536 27.518708800941656 28.01106628926683 22.14260055323198 64-65 22.300791416406017 27.546343230747244 27.960191522105482 22.192673830741256 66-67 22.29839512535861 27.545437998102056 27.862253167167456 22.29391370937188 68-69 22.27878928153293 27.50187105199582 27.95604252651994 22.26329713995131 70-71 22.29666678679351 27.348068722437386 27.975889094126877 22.379375396642224 72-73 22.341398853572215 27.39048164605614 27.879694496686174 22.388425003685462 74-75 22.22900208586171 27.520713561114814 27.834926466576594 22.415357886446888 76-77 22.398371587662734 27.44357688349578 27.778410874594872 22.379640654246614 78-79 22.30303540712209 27.47264296231407 27.75826014367367 22.466061486890172 80-81 22.34800724156202 27.51740235317877 27.726219035829057 22.408371369430153 82-83 22.40236859178275 27.53390191828814 27.754417074265753 22.309312415663356 84-85 22.481001684387213 27.47467019398087 27.72574076719084 22.318587354441075 86-87 22.305486900823027 27.50872331031115 27.838028787813673 22.347761001052152 88-89 22.406693604847806 27.484108876514675 27.751409595071824 22.3577879235657 90-91 22.381380815438646 27.591679877541676 27.722522627390845 22.304416679628837 92-93 22.439682462194753 27.47548807918918 27.75466674677712 22.33016271183895 94-95 22.331821163811032 27.55532088131053 27.755603211117492 22.357254743760947 96-97 22.460360497189445 27.697689321468577 27.77538118775002 22.06656899359196 98-99 23.559297697818675 29.57774887636787 27.96962073432293 18.893332691490528 100 22.370990985011503 30.495469429279293 21.969702131101172 25.16383745460803 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 718.0 1 734.5 2 1029.5 3 1440.0 4 1868.5 5 2654.5 6 3463.0 7 4467.0 8 5748.5 9 6654.5 10 6904.0 11 7221.0 12 8253.0 13 10216.0 14 13861.5 15 18207.5 16 21570.5 17 23448.0 18 23542.5 19 22235.5 20 20415.5 21 18605.5 22 18457.5 23 20774.0 24 25634.5 25 33301.5 26 43107.0 27 54899.0 28 68071.0 29 83204.5 30 99512.5 31 116292.0 32 134302.5 33 152138.5 34 169861.0 35 186372.0 36 203327.0 37 220258.5 38 233870.5 39 244785.5 40 255534.0 41 264504.5 42 270647.0 43 275975.0 44 279246.5 45 282533.5 46 283982.0 47 281756.0 48 278929.0 49 274375.5 50 267274.0 51 257934.5 52 247364.0 53 235148.5 54 221881.5 55 207584.0 56 190480.0 57 172245.0 58 153923.0 59 133092.0 60 110376.0 61 90088.0 62 71822.0 63 55582.5 64 41971.5 65 31173.5 66 23236.5 67 17831.5 68 13695.5 69 10140.5 70 7619.0 71 5619.0 72 3964.5 73 2684.0 74 1786.0 75 1195.5 76 778.5 77 485.0 78 301.0 79 189.5 80 124.5 81 79.5 82 49.5 83 30.0 84 23.0 85 18.0 86 12.5 87 10.0 88 6.0 89 2.5 90 1.5 91 1.5 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004130437417812152 3 0.0 4 0.0 5 0.0027236942392819268 6 1.0475747074161255E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 7.483116592344353E-6 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 3.001882931068513E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 2.3343821971921117E-5 48-49 4.391020019052322E-4 50-51 0.0018005239050741687 52-53 0.004348632490231278 54-55 0.006123297273115627 56-57 0.00703126121312801 58-59 0.008555198416418962 60-61 0.008236191709397028 62-63 0.0060870783780625 64-65 0.003672755186271009 66-67 0.001189445796159313 68-69 4.6459314522379237E-4 70-71 1.9595120508287205E-4 72-73 6.44307368290473E-4 74-75 0.0 76-77 3.230966420478669E-4 78-79 2.026149485256723E-4 80-81 7.111068760746046E-5 82-83 0.0 84-85 9.95018575187674E-5 86-87 1.0949463572092773E-4 88-89 9.208374464072606E-6 90-91 9.297430376192628E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 74.0 20-21 234.0 22-23 389.0 24-25 482.0 26-27 1354.0 28-29 3454.0 30-31 10584.0 32-33 13575.0 34-35 19033.0 36-37 30894.0 38-39 36821.0 40-41 36166.0 42-43 41376.0 44-45 49332.0 46-47 49847.0 48-49 46200.0 50-51 42797.0 52-53 41743.0 54-55 45142.0 56-57 46677.0 58-59 47129.0 60-61 45638.0 62-63 44375.0 64-65 47140.0 66-67 50051.0 68-69 50320.0 70-71 49386.0 72-73 46618.0 74-75 47147.0 76-77 49677.0 78-79 50770.0 80-81 50386.0 82-83 47885.0 84-85 47653.0 86-87 49131.0 88-89 51527.0 90-91 52430.0 92-93 51598.0 94-95 62970.0 96-97 207029.0 98-99 466978.0 100-101 4550089.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.92538440348176 #Duplication Level Percentage of deduplicated Percentage of total 1 89.8328067430119 77.18918451436986 2 7.275946950052313 12.503770771651713 3 1.6898146430972105 4.355939183362803 4 0.5887758973961131 2.0236318124506383 5 0.24883383745546583 1.0690571567977198 6 0.13186154140216816 0.6798152179810154 7 0.07561233957950106 0.4547913540810658 8 0.043926428529002484 0.3019516205461285 9 0.027259142383955083 0.21080270590655242 >10 0.08334473390412725 1.0596104954307106 >50 0.0014656948584332364 0.0829581736582617 >100 3.257163850430775E-4 0.05083885041752259 >500 2.6331944814305324E-5 0.017648143346031535 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.986141185235003E-5 0.0 0.0 0.0 3 0.0 5.986141185235003E-5 0.0 1.4965352963087507E-5 0.0 4 0.0 7.482676481543754E-5 0.0 2.9930705926175015E-5 0.0 5 0.0 7.482676481543754E-5 0.0 2.9930705926175015E-5 0.0 6 0.0 7.482676481543754E-5 0.0 2.9930705926175015E-5 0.0 7 0.0 8.979211777852505E-5 0.0 2.9930705926175015E-5 0.0 8 0.0 8.979211777852505E-5 0.0 2.9930705926175015E-5 1.4965352963087507E-5 9 0.0 1.795842355570501E-4 0.0 4.4896058889262524E-5 1.4965352963087507E-5 10-11 0.0 1.795842355570501E-4 0.0 5.986141185235003E-5 1.4965352963087507E-5 12-13 0.0 1.795842355570501E-4 0.0 5.986141185235003E-5 1.4965352963087507E-5 14-15 0.0 2.2448029444631262E-4 0.0 8.979211777852505E-5 2.2448029444631262E-5 16-17 0.0 2.3944564740940012E-4 0.0 1.1972282370470006E-4 4.4896058889262524E-5 18-19 0.0 2.5441100037248765E-4 0.0 1.496535296308751E-4 4.4896058889262524E-5 20-21 0.0 2.6937635333557514E-4 0.0 1.8706691203859385E-4 5.2378735370806274E-5 22-23 0.0 3.3672044166946894E-4 0.0 2.0951494148322512E-4 1.122401472231563E-4 24-25 0.0 3.591684711141002E-4 0.0 2.1699761796476887E-4 1.646188825939626E-4 26-27 0.0 3.741338240771877E-4 0.0 2.768590298171189E-4 1.795842355570501E-4 28-29 0.0 3.890991770402752E-4 0.0 4.86373971300344E-4 1.795842355570501E-4 30-31 0.0 4.4896058889262524E-4 0.0 9.72747942600688E-4 1.795842355570501E-4 32-33 0.0 4.7889129481880024E-4 0.0 0.002087666738350707 2.2448029444631262E-4 34-35 0.0 5.836487655604128E-4 0.0 0.003584202034659458 2.2448029444631262E-4 36-37 0.0 6.884062363020254E-4 0.0 0.006390205715238366 2.2448029444631262E-4 38-39 0.0 6.884062363020254E-4 0.0 0.010124061279528699 2.2448029444631262E-4 40-41 0.0 7.781983540805504E-4 0.0 0.014261981373822395 2.2448029444631262E-4 42-43 0.0 8.081290600067254E-4 0.0 0.018774035292193278 2.2448029444631262E-4 44-45 0.0 9.278518837114256E-4 0.0 0.023682671064085982 2.2448029444631262E-4 46-47 1.4965352963087507E-5 0.0010176440014899506 0.0 0.029272230395799164 2.2448029444631262E-4 48-49 1.4965352963087507E-5 0.0010251266779714944 0.0 0.034599896050658316 2.3944564740940012E-4 50-51 1.4965352963087507E-5 0.0011149187957500194 0.0 0.039613289293292636 2.3944564740940012E-4 52-53 1.4965352963087507E-5 0.0011224014722315632 0.0 0.045045712418893394 2.768590298171189E-4 54-55 1.4965352963087507E-5 0.0011448495016761944 0.0 0.0498346253670814 3.217550887063814E-4 56-57 1.4965352963087507E-5 0.0011822628840839132 0.0 0.05408478560859825 3.442031181510127E-4 58-59 1.4965352963087507E-5 0.0011822628840839132 0.0 0.05878390643900773 3.591684711141002E-4 60-61 1.4965352963087507E-5 0.0011897455605654568 0.0 0.06308644541589539 3.591684711141002E-4 62-63 1.4965352963087507E-5 0.0012121935900100882 0.0 0.06733660565741224 3.591684711141002E-4 64-65 1.4965352963087507E-5 0.0013468817666778758 0.0 0.07171397139911534 3.6665114759564394E-4 66-67 1.4965352963087507E-5 0.0013543644431594196 0.0 0.07596413164063219 3.8161650055873144E-4 68-69 1.4965352963087507E-5 0.001369329796122507 0.0 0.08003470764659198 3.890991770402752E-4 70-71 1.4965352963087507E-5 0.0013768124726040508 0.0 0.08401549153477328 3.890991770402752E-4 72-73 1.4965352963087507E-5 0.0013842951490855944 0.0 0.08706094086276157 3.890991770402752E-4 74-75 1.4965352963087507E-5 0.0014217085314933132 0.0 0.08938057057204014 3.890991770402752E-4 76-77 1.4965352963087507E-5 0.0014890526198272072 0.0 0.09141585857502005 3.890991770402752E-4 78-79 1.4965352963087507E-5 0.0015264660022349258 0.0 0.09245595060595463 3.890991770402752E-4 80-81 1.4965352963087507E-5 0.0015264660022349258 0.0 0.09287498048892107 3.9658185352181894E-4 82-83 1.4965352963087507E-5 0.0015264660022349258 0.0 0.09342121587207376 4.26512559447994E-4 84-85 1.4965352963087507E-5 0.0015414313551980132 0.0 0.09360828278411237 4.3399523592953774E-4 86-87 1.4965352963087507E-5 0.001578844737605732 0.0 0.09366814419596471 4.414779124110815E-4 88 1.4965352963087507E-5 0.0016312234729765384 0.0 0.09366814419596471 4.4896058889262524E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9400 0.0 47.33901 1 GTATCAA 15840 0.0 32.94272 1 TCAACGC 18050 0.0 28.859306 4 ATCAACG 18290 0.0 28.457018 3 CAACGCA 18830 0.0 27.709698 5 AACGCAG 19305 0.0 27.094158 6 TATCAAC 19775 0.0 26.583927 2 ACGCAGA 22365 0.0 23.406404 7 CGCAGAG 22780 0.0 22.923159 8 GTGGTAT 4890 0.0 20.124 1 GAGTACT 14785 0.0 20.009165 12-13 TGGTATC 4750 0.0 19.717617 2 GTACATG 18980 0.0 19.670176 1 GCAGAGT 26855 0.0 19.460852 9 TACATGG 19355 0.0 19.199871 2 CAGAGTA 25965 0.0 18.523993 10-11 ACATGGG 19705 0.0 18.35369 3 GTACTTT 16490 0.0 17.744278 14-15 AGAGTAC 23695 0.0 17.44824 10-11 CATGGGG 14610 0.0 16.601292 4 >>END_MODULE