##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139786_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5671238 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.887639524209707 32.0 25.0 33.0 18.0 33.0 2 30.606852154679455 32.0 30.0 33.0 25.0 33.0 3 30.350682337789387 32.0 30.0 33.0 25.0 33.0 4 31.273614508860323 33.0 31.0 33.0 28.0 33.0 5 31.644297594281884 33.0 32.0 33.0 30.0 33.0 6 35.03283797999661 37.0 34.0 38.0 29.0 38.0 7 36.45619157580761 38.0 37.0 38.0 34.0 38.0 8 36.42483863311679 38.0 37.0 38.0 34.0 38.0 9 36.85269671278123 38.0 38.0 38.0 35.0 38.0 10-11 36.97439227554901 38.0 38.0 38.0 35.0 38.0 12-13 37.04533128392778 38.0 38.0 38.0 36.0 38.0 14-15 37.10014118610434 38.0 38.0 38.0 36.0 38.0 16-17 37.068972859188776 38.0 38.0 38.0 36.0 38.0 18-19 37.121186414677005 38.0 38.0 38.0 36.0 38.0 20-21 37.160838506736596 38.0 38.0 38.0 36.0 38.0 22-23 37.177393485224975 38.0 38.0 38.0 36.0 38.0 24-25 37.18029075617805 38.0 38.0 38.0 36.0 38.0 26-27 37.15459550004337 38.0 38.0 38.0 36.0 38.0 28-29 37.13299528667672 38.0 38.0 38.0 36.0 38.0 30-31 37.13275205932886 38.0 38.0 38.0 36.0 38.0 32-33 37.12314558620926 38.0 38.0 38.0 36.0 38.0 34-35 37.10322018709073 38.0 38.0 38.0 36.0 38.0 36-37 37.08709592295603 38.0 38.0 38.0 36.0 38.0 38-39 37.064561735813015 38.0 38.0 38.0 36.0 38.0 40-41 37.03730384579377 38.0 38.0 38.0 36.0 38.0 42-43 37.007471328690286 38.0 38.0 38.0 36.0 38.0 44-45 36.95738021376839 38.0 38.0 38.0 36.0 38.0 46-47 36.928479895979734 38.0 38.0 38.0 36.0 38.0 48-49 36.893567468647355 38.0 38.0 38.0 36.0 38.0 50-51 36.85930741715278 38.0 38.0 38.0 35.0 38.0 52-53 36.83309254870308 38.0 38.0 38.0 35.0 38.0 54-55 36.80360931766951 38.0 38.0 38.0 35.0 38.0 56-57 36.80293575941019 38.0 38.0 38.0 35.0 38.0 58-59 36.78938964559059 38.0 38.0 38.0 35.0 38.0 60-61 36.7945149177535 38.0 38.0 38.0 35.0 38.0 62-63 36.7814507274293 38.0 38.0 38.0 35.0 38.0 64-65 36.77170919403871 38.0 38.0 38.0 35.0 38.0 66-67 36.757692586240815 38.0 38.0 38.0 35.0 38.0 68-69 36.76345150051375 38.0 38.0 38.0 35.0 38.0 70-71 36.741001940987104 38.0 38.0 38.0 35.0 38.0 72-73 36.723322306331475 38.0 38.0 38.0 35.0 38.0 74-75 36.733871349660426 38.0 38.0 38.0 35.0 38.0 76-77 36.70618091700404 38.0 38.0 38.0 34.5 38.0 78-79 36.67815683449807 38.0 38.0 38.0 34.0 38.0 80-81 36.66689392735108 38.0 38.0 38.0 34.0 38.0 82-83 36.604950307949636 38.0 38.0 38.0 34.0 38.0 84-85 36.598616273039156 38.0 38.0 38.0 34.0 38.0 86-87 36.58604896551847 38.0 38.0 38.0 34.0 38.0 88-89 36.55531137587006 38.0 38.0 38.0 34.0 38.0 90-91 36.529755576178786 38.0 38.0 38.0 34.0 38.0 92-93 36.53044884388431 38.0 38.0 38.0 34.0 38.0 94-95 36.471317475203705 38.0 38.0 38.0 34.0 38.0 96-97 36.434178395924945 38.0 38.0 38.0 34.0 38.0 98-99 36.458440387436696 38.0 38.0 38.0 34.0 38.0 100 34.76843236662228 38.0 34.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 18.0 19 29.0 20 67.0 21 188.0 22 683.0 23 1835.0 24 4425.0 25 8736.0 26 14687.0 27 23404.0 28 34568.0 29 49538.0 30 67077.0 31 88354.0 32 116144.0 33 156665.0 34 227040.0 35 384107.0 36 974132.0 37 3519537.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.45841489988606 19.054569742973225 14.990007472795181 25.497007884345535 2 13.772164612690494 19.544463945104887 43.961408794482416 22.721962647722204 3 17.997640021455634 24.656732798023995 30.29278616062313 27.052841019897244 4 11.985531201476645 17.5524638535713 39.8158744175434 30.646130527408655 5 13.352751593163124 36.61909616217809 35.82131109932003 14.20684114533876 6 29.861185438445066 38.0470391369781 18.658828279907286 13.432947144669546 7 26.73927632732042 32.741598924256046 22.447250494512836 18.071874253910696 8 24.041382146191008 37.49980163061399 20.626889578607 17.831926644588005 9 24.962644840509252 17.670427515121037 21.44041565527668 35.92651198909304 10-11 24.07148139436222 27.202464435454832 28.52826843098456 20.19778573919839 12-13 24.871791661714777 24.44728117564454 28.99915327129632 21.681773891344356 14-15 21.855501391406957 26.073628015611405 26.817909951936418 25.25296064104522 16-17 21.33446877031082 29.37415075861743 27.470606946843002 21.82077352422875 18-19 21.266406029865085 28.282475537087315 29.6114269935418 20.8396914395058 20-21 22.05240288248034 27.28687221259505 29.704667874239078 20.956057030685535 22-23 21.745815942005986 27.195504088394674 29.589970251792913 21.468709717806426 24-25 21.556243081607448 27.3170189326546 29.649613892634836 21.477124093103114 26-27 21.482681415468782 27.516756862575647 29.5623595143971 21.43820220755847 28-29 21.422697165323996 27.564336412882028 29.619816977008874 21.393149444785102 30-31 21.74171272766039 27.37744798678922 29.552325265334623 21.32851402021577 32-33 21.428670509097834 27.520421474675427 29.54137770020467 21.509530316022072 34-35 21.616565389230917 27.560756948578362 29.49466646407935 21.328011198111373 36-37 21.59605381379127 27.492536235747174 29.48297094407603 21.428439006385524 38-39 21.443369517051927 27.634198070223437 29.511729474076994 21.410702938647646 40-41 21.720756153011024 27.48852499590035 29.384004147400088 21.406714703688543 42-43 21.602252595132402 27.517515319308504 29.287931146753248 21.59230093880585 44-45 21.711482410449047 27.633076611122302 29.142827207917893 21.512613770510754 46-47 21.71301352600185 27.66256678715723 28.8671632492518 21.757256437589128 48-49 21.60914791700548 27.791884595260736 28.87342421713417 21.725543270599612 50-51 21.665888881440484 27.90777186079867 28.72209825950451 21.704240998256335 52-53 21.825136660599448 27.874113715545935 28.580928114191146 21.719821509663472 54-55 21.761715209741173 27.81053654597111 28.65421529262368 21.773532951664038 56-57 21.764244160197205 27.89937633997328 28.608397367358045 21.727982132471464 58-59 21.716468869579913 27.937658530246324 28.647547743319556 21.698324856854207 60-61 21.81503105577092 27.885488174583955 28.693155580883918 21.606325188761204 62-63 21.774834492756504 27.849110811713395 28.678509773773015 21.697544921757085 64-65 21.72042820547972 27.86022621588587 28.6809206990785 21.73842487955591 66-67 21.792459999196524 27.906454000225555 28.49726116046255 21.80382484011537 68-69 21.746410239731496 27.8914662110179 28.587587966058837 21.774535583191774 70-71 21.766772666226 27.69174117395937 28.62973801618277 21.91174814363186 72-73 21.821953721916827 27.759938706204256 28.534507563403295 21.88360000847562 74-75 21.71358904002492 27.82047799512807 28.517811834242586 21.948121130604427 76-77 21.8190381362092 27.81929673037118 28.427264263643075 21.934400869776542 78-79 21.780982193236255 27.87358416967726 28.362985619218556 21.982448017867927 80-81 21.825634208485653 27.895443214646892 28.332391458497014 21.946531118370437 82-83 21.88892627926825 27.88353856465345 28.39145867396009 21.83607648211821 84-85 21.95351375296381 27.851724132565014 28.360947153782035 21.833814960689143 86-87 21.78390457010329 27.900812049195583 28.428539461659273 21.886743919041855 88-89 21.89158226543434 27.91376813389758 28.320728724747507 21.873920875920565 90-91 21.910090664652486 27.95082991800554 28.32966933598581 21.809410081356166 92-93 21.904424205709823 27.888702919258012 28.39045592546586 21.816416949566303 94-95 21.778079277003027 28.014105915102654 28.35199193972482 21.8558228681695 96-97 21.942663999930513 28.141978962015724 28.35948779051249 21.555869247541278 98-99 22.920065523757106 29.97068986172874 28.65173363952207 18.457510974992083 100 21.797644802949247 31.001160574756533 22.663475190552134 24.537719431742083 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1061.0 1 950.0 2 1178.0 3 1634.0 4 1976.5 5 2727.5 6 3599.0 7 4902.0 8 6688.0 9 7834.0 10 7945.5 11 7952.5 12 8738.5 13 10681.5 14 14512.0 15 19033.0 16 22629.0 17 24915.0 18 25152.0 19 23401.5 20 21010.5 21 19090.5 22 18734.0 23 20640.5 24 25214.0 25 32561.0 26 42595.0 27 54103.5 28 66158.0 29 79766.5 30 93923.0 31 107893.5 32 122617.0 33 137181.0 34 150917.0 35 163806.5 36 178163.5 37 191511.0 38 201311.5 39 209328.5 40 217949.5 41 225014.0 42 228427.0 43 232471.0 44 234950.5 45 235052.5 46 234161.0 47 231942.5 48 227608.5 49 221624.0 50 215150.0 51 206066.0 52 195457.0 53 184299.0 54 171868.0 55 157737.0 56 142485.0 57 127260.0 58 112448.5 59 96803.5 60 79584.0 61 63354.0 62 48965.5 63 37223.5 64 28353.5 65 21195.5 66 15516.0 67 11693.0 68 8922.5 69 6513.0 70 4728.0 71 3427.0 72 2356.0 73 1552.0 74 1021.5 75 662.0 76 409.0 77 240.0 78 142.5 79 91.5 80 61.5 81 40.0 82 28.5 83 18.0 84 10.0 85 8.0 86 7.0 87 2.5 88 0.0 89 1.0 90 1.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0036147310340352494 3 0.0 4 0.0 5 0.005060623447649349 6 5.2898502937101214E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.7633788878757297E-5 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 4.0268713122667556E-4 50-51 0.00158378382161143 52-53 0.00394464825127076 54-55 0.005885242976726099 56-57 0.0067834437126424564 58-59 0.008166024904490041 60-61 0.007925031292009783 62-63 0.005626127314962738 64-65 0.003355036606910164 66-67 0.001026116504299864 68-69 4.290949383278424E-4 70-71 2.3585976485960742E-4 72-73 5.643781725850629E-4 74-75 0.0 76-77 2.2102016276527567E-4 78-79 2.531607371190045E-4 80-81 1.0210014901516749E-4 82-83 3.088222487077333E-5 84-85 6.224582307185004E-5 86-87 1.3593388092380247E-4 88-89 3.1632329421609184E-5 90-91 1.0638268447342592E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 47.0 20-21 177.0 22-23 354.0 24-25 428.0 26-27 1000.0 28-29 2148.0 30-31 6070.0 32-33 8276.0 34-35 11653.0 36-37 19170.0 38-39 24040.0 40-41 24162.0 42-43 29284.0 44-45 35862.0 46-47 36517.0 48-49 34163.0 50-51 30931.0 52-53 29772.0 54-55 32229.0 56-57 33874.0 58-59 34463.0 60-61 33895.0 62-63 33035.0 64-65 35317.0 66-67 37600.0 68-69 39155.0 70-71 38726.0 72-73 35998.0 74-75 36492.0 76-77 38793.0 78-79 40162.0 80-81 40668.0 82-83 37880.0 84-85 37547.0 86-87 39104.0 88-89 41428.0 90-91 42745.0 92-93 42641.0 94-95 52844.0 96-97 175922.0 98-99 408125.0 100-101 3988541.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.0737491962432 #Duplication Level Percentage of deduplicated Percentage of total 1 90.64527099149787 78.92823592139186 2 6.832297791850044 11.898275687231937 3 1.5140687749101822 3.9550693431717714 4 0.4934507649759197 1.7186643260083032 5 0.20820792230207552 0.9064722203600906 6 0.11338060761325544 0.592348475462056 7 0.05554189483267828 0.3385368714381321 8 0.036291290505438875 0.2528014981982869 9 0.026218968340696706 0.2054685486133859 >10 0.07300830978982141 0.9561978517874563 >50 0.0015705612345098747 0.10050045816205927 >100 6.331996430939134E-4 0.10348518051652945 >500 2.9461252810753002E-5 0.016648808281246538 >1k 2.9461251603909753E-5 0.027294809376888964 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.763283431236707E-5 3.526566862473414E-5 2 0.0 1.763283431236707E-5 0.0 1.763283431236707E-5 3.526566862473414E-5 3 0.0 1.763283431236707E-5 0.0 1.763283431236707E-5 3.526566862473414E-5 4 0.0 1.0579700587420243E-4 0.0 1.763283431236707E-5 3.526566862473414E-5 5 0.0 1.0579700587420243E-4 0.0 1.763283431236707E-5 3.526566862473414E-5 6 0.0 1.0579700587420243E-4 0.0 1.763283431236707E-5 3.526566862473414E-5 7 0.0 1.0579700587420243E-4 0.0 1.763283431236707E-5 3.526566862473414E-5 8 0.0 1.0579700587420243E-4 0.0 1.763283431236707E-5 3.526566862473414E-5 9 0.0 1.4106267449893656E-4 0.0 1.0579700587420243E-4 3.526566862473414E-5 10-11 1.763283431236707E-5 1.4106267449893656E-4 0.0 1.0579700587420243E-4 3.526566862473414E-5 12-13 1.763283431236707E-5 1.4106267449893656E-4 0.0 1.4106267449893656E-4 3.526566862473414E-5 14-15 3.526566862473414E-5 1.9396117743603777E-4 0.0 1.6751192596748716E-4 6.171492009328475E-5 16-17 5.2898502937101214E-5 1.9396117743603777E-4 0.0 2.2041042890458837E-4 7.053133724946828E-5 18-19 5.2898502937101214E-5 2.027775945922213E-4 0.0 2.644925146855061E-4 7.053133724946828E-5 20-21 5.2898502937101214E-5 2.1159401174840486E-4 0.0 2.9094176615405667E-4 7.053133724946828E-5 22-23 9.69805887180189E-5 2.2922684606077192E-4 0.0 3.3502385193497433E-4 7.934775440565181E-5 24-25 1.5869550881130362E-4 2.2922684606077192E-4 0.0 3.6147310340352496E-4 8.816417156183535E-5 26-27 1.5869550881130362E-4 2.2922684606077192E-4 0.0 3.702895205597085E-4 8.816417156183535E-5 28-29 1.5869550881130362E-4 2.2922684606077192E-4 0.0 4.320044406529932E-4 8.816417156183535E-5 30-31 1.9396117743603777E-4 2.5567609752932255E-4 0.0 8.640088813059865E-4 8.816417156183535E-5 32-33 2.1159401174840486E-4 2.6449251468550603E-4 0.0 0.0018602640199547257 8.816417156183535E-5 34-35 2.1159401174840486E-4 3.6147310340352496E-4 0.0 0.0030240310845709526 1.0579700587420243E-4 36-37 2.1159401174840486E-4 4.5845369212154383E-4 0.0 0.0048754786873694955 1.0579700587420243E-4 38-39 2.1159401174840486E-4 4.5845369212154383E-4 0.0 0.007635017257254941 1.0579700587420243E-4 40-41 2.1159401174840486E-4 5.113521950586451E-4 0.0 0.010949990107979951 1.0579700587420243E-4 42-43 2.1159401174840486E-4 5.289850293710122E-4 0.0 0.01423851370723641 1.1461342303038596E-4 44-45 2.1159401174840486E-4 5.818835323081133E-4 0.0 0.01777389698686601 1.234298401865695E-4 46-47 2.1159401174840486E-4 6.171492009328475E-4 0.0 0.021732468289992413 1.234298401865695E-4 48-49 2.1159401174840486E-4 6.171492009328475E-4 0.0 0.025999614193585246 1.234298401865695E-4 50-51 2.1159401174840486E-4 6.788641210261322E-4 0.0 0.030531252611863582 1.234298401865695E-4 52-53 2.2922684606077192E-4 6.876805381823157E-4 0.0 0.03461325375517656 1.3224625734275304E-4 54-55 2.46859680373139E-4 6.876805381823157E-4 0.0 0.03840431313233548 1.4106267449893656E-4 56-57 2.46859680373139E-4 6.876805381823157E-4 0.0 0.041983778497746 1.4987909165512008E-4 58-59 2.821253489978731E-4 6.876805381823157E-4 0.0 0.04581010354352965 1.5869550881130362E-4 60-61 2.821253489978731E-4 7.141297896508664E-4 0.0 0.0496364285893133 1.5869550881130362E-4 62-63 2.821253489978731E-4 7.40579041119417E-4 0.0 0.05322471037188001 1.5869550881130362E-4 64-65 2.821253489978731E-4 9.169073842430877E-4 0.0 0.05654849963976119 1.6751192596748716E-4 66-67 2.821253489978731E-4 9.169073842430877E-4 0.0 0.06031310976545157 1.763283431236707E-4 68-69 2.821253489978731E-4 9.433566357116383E-4 0.0 0.06411298555976666 1.763283431236707E-4 70-71 2.821253489978731E-4 9.786223043363725E-4 0.0 0.06781588076536375 1.763283431236707E-4 72-73 2.821253489978731E-4 9.962551386487396E-4 0.0 0.07063713425534249 1.9396117743603777E-4 74-75 2.821253489978731E-4 0.0010315208072734735 0.0 0.07267372661842089 1.9396117743603777E-4 76-77 2.821253489978731E-4 0.0010756028930543912 0.0 0.07465742047856218 2.027775945922213E-4 78-79 2.821253489978731E-4 0.0011108685616791254 0.0 0.07605923080639536 2.1159401174840486E-4 80-81 2.821253489978731E-4 0.0011108685616791254 0.0 0.07642952032695507 2.1159401174840486E-4 82-83 2.821253489978731E-4 0.0011108685616791254 0.0 0.07698495460779464 2.1159401174840486E-4 84-85 2.821253489978731E-4 0.0011108685616791254 0.0 0.07717009936807448 2.2041042890458837E-4 86-87 2.821253489978731E-4 0.0011285013959914925 0.0 0.07728471279110487 2.3804326321695546E-4 88 2.821253489978731E-4 0.001216665567553328 0.0 0.07728471279110487 2.6449251468550603E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7430 0.0 49.452084 1 GTATCAA 14230 0.0 39.514008 1 TCAACGC 16475 0.0 33.59799 4 ATCAACG 16490 0.0 33.408463 3 CAACGCA 16955 0.0 32.59529 5 TATCAAC 17315 0.0 32.120575 2 AACGCAG 17485 0.0 31.729403 6 ACGCAGA 19620 0.0 28.254421 7 CGCAGAG 19980 0.0 27.72347 8 GTGGTAT 4010 0.0 26.693106 1 TGGTATC 3795 0.0 26.478506 2 GCAGAGT 23385 0.0 23.761482 9 GAGTACT 13965 0.0 21.239908 12-13 GTACATG 15895 0.0 20.834644 1 TACATGG 15700 0.0 20.536863 2 CAGAGTA 23010 0.0 19.896122 10-11 ACATGGG 15685 0.0 19.83159 3 AGAGTAC 21055 0.0 19.730999 10-11 GTACTTT 15510 0.0 19.096558 14-15 AGTACTT 15260 0.0 17.777098 12-13 >>END_MODULE