##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139785_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8263713 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.916379961404758 18.0 18.0 30.0 18.0 33.0 2 30.479942611753337 32.0 28.0 33.0 27.0 33.0 3 32.04650476123747 33.0 32.0 33.0 30.0 33.0 4 32.38717499022534 33.0 33.0 33.0 31.0 34.0 5 32.8423197901476 33.0 33.0 34.0 32.0 34.0 6 36.708845285406206 38.0 37.0 38.0 34.0 38.0 7 36.98058197326069 38.0 38.0 38.0 35.0 38.0 8 37.034230859663204 38.0 38.0 38.0 36.0 38.0 9 37.17222161515048 38.0 38.0 38.0 36.0 38.0 10-11 37.20476164891012 38.0 38.0 38.0 36.0 38.0 12-13 37.22228518826827 38.0 38.0 38.0 36.0 38.0 14-15 37.212354422279674 38.0 38.0 38.0 36.0 38.0 16-17 37.16556788697768 38.0 38.0 38.0 36.0 38.0 18-19 37.18788920912428 38.0 38.0 38.0 36.0 38.0 20-21 37.20695309369693 38.0 38.0 38.0 36.0 38.0 22-23 37.21351787311078 38.0 38.0 38.0 36.0 38.0 24-25 37.21707572540852 38.0 38.0 38.0 36.0 38.0 26-27 37.18647707142031 38.0 38.0 38.0 36.0 38.0 28-29 37.15937411616952 38.0 38.0 38.0 36.0 38.0 30-31 37.160352022191574 38.0 38.0 38.0 36.0 38.0 32-33 37.15265944917316 38.0 38.0 38.0 36.0 38.0 34-35 37.13142945212664 38.0 38.0 38.0 36.0 38.0 36-37 37.11227457883929 38.0 38.0 38.0 36.0 38.0 38-39 37.09343270858979 38.0 38.0 38.0 36.0 38.0 40-41 37.07067473457966 38.0 38.0 38.0 36.0 38.0 42-43 37.044265550226015 38.0 38.0 38.0 36.0 38.0 44-45 36.99220036232728 38.0 38.0 38.0 36.0 38.0 46-47 36.963275312536794 38.0 38.0 38.0 36.0 38.0 48-49 36.92991965226662 38.0 38.0 38.0 36.0 38.0 50-51 36.8878595920484 38.0 38.0 38.0 35.5 38.0 52-53 36.85847642509218 38.0 38.0 38.0 35.0 38.0 54-55 36.83113065318804 38.0 38.0 38.0 35.0 38.0 56-57 36.829074386234346 38.0 38.0 38.0 35.0 38.0 58-59 36.81535804032952 38.0 38.0 38.0 35.0 38.0 60-61 36.82200079038029 38.0 38.0 38.0 35.0 38.0 62-63 36.80862220243773 38.0 38.0 38.0 35.0 38.0 64-65 36.796823723106186 38.0 38.0 38.0 35.0 38.0 66-67 36.784969655845984 38.0 38.0 38.0 35.0 38.0 68-69 36.79032088388995 38.0 38.0 38.0 35.0 38.0 70-71 36.76751935504625 38.0 38.0 38.0 35.0 38.0 72-73 36.75013419298823 38.0 38.0 38.0 35.0 38.0 74-75 36.759718442743385 38.0 38.0 38.0 35.0 38.0 76-77 36.738215938725915 38.0 38.0 38.0 35.0 38.0 78-79 36.71034055113677 38.0 38.0 38.0 34.5 38.0 80-81 36.69932741282264 38.0 38.0 38.0 34.5 38.0 82-83 36.63814603631417 38.0 38.0 38.0 34.0 38.0 84-85 36.635213384565816 38.0 38.0 38.0 34.0 38.0 86-87 36.61834094201373 38.0 38.0 38.0 34.0 38.0 88-89 36.590340238545224 38.0 38.0 38.0 34.0 38.0 90-91 36.56657376081587 38.0 38.0 38.0 34.0 38.0 92-93 36.567715455175694 38.0 38.0 38.0 34.0 38.0 94-95 36.50896889762518 38.0 38.0 38.0 34.0 38.0 96-97 36.47065890920793 38.0 38.0 38.0 34.0 38.0 98-99 36.4956259593659 38.0 38.0 38.0 34.0 38.0 100 34.818868373998875 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 17.0 19 37.0 20 109.0 21 300.0 22 907.0 23 2534.0 24 5990.0 25 11349.0 26 19651.0 27 31575.0 28 47078.0 29 67659.0 30 92397.0 31 121607.0 32 157753.0 33 210246.0 34 304817.0 35 517259.0 36 1403095.0 37 5269331.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.4000419666075 18.31559251876245 22.36192133003651 22.922444184593534 2 14.186754022816025 20.84529659986277 42.22341891864092 22.74453045868029 3 18.666584863244886 25.057102055698206 30.54751538442828 25.728797696628625 4 12.55974160767684 18.230570204942982 38.55725628419089 30.65243190318928 5 13.342662704507577 37.017862147649645 36.08557043812386 13.553904709718923 6 30.146954629441723 37.98222758865967 18.427057009644702 13.443760772253905 7 26.741199748829615 32.557919182333656 22.66845424084791 18.03242682798882 8 24.086908632959542 37.57780552156155 20.63801102482625 17.697274820652652 9 24.9318798946672 17.59902600683252 21.45472622294603 36.01436787555424 10-11 24.267293648750872 27.162941162162817 28.49269450669451 20.077070682391803 12-13 24.986897536252773 24.41016526106364 28.947586877714652 21.655350324968932 14-15 21.929978691176714 26.078210847835592 26.646423950105717 25.345386510881973 16-17 21.47032453813437 29.287651930796727 27.396825131753726 21.845198399315173 18-19 21.4871148114655 28.20944410823561 29.347830690635067 20.95561038966382 20-21 22.21820594590951 27.253761285793583 29.45370520851876 21.074327559778144 22-23 21.95976639645837 27.166071879250904 29.31874871306212 21.5554130112286 24-25 21.730396733812626 27.294200726263167 29.376098668194793 21.59930387172941 26-27 21.661466824027617 27.468482926090665 29.290245384078084 21.579804865803634 28-29 21.62259894830193 27.458540805099307 29.359140671168905 21.559719575429856 30-31 21.882802223406923 27.326168688347636 29.229737068213126 21.561292020032322 32-33 21.641471446545992 27.488076634631454 29.21875459626137 21.651697322561187 34-35 21.825779898409788 27.498461076632612 29.19325170709594 21.48250731786166 36-37 21.797643631073296 27.412558850107953 29.169615317202478 21.62018220161627 38-39 21.631835687217947 27.560254653276477 29.264492698400574 21.543416961105002 40-41 21.916928434490522 27.46122907228606 29.062167395138527 21.55967509808489 42-43 21.818182043012268 27.472838177091795 28.957764048581275 21.75121573131466 44-45 21.871749486636627 27.58508817507408 28.826137287749255 21.71702505054004 46-47 21.908873715495893 27.62550950479308 28.584281746978846 21.88133503273218 48-49 21.834895084061674 27.72193523181793 28.568884543908645 21.874285140211754 50-51 21.841169153897038 27.88449042234959 28.453630878675728 21.820709545077644 52-53 21.99558401218394 27.785102396508314 28.35825674116817 21.86105685013958 54-55 21.968475396468833 27.692757898367482 28.39297670830608 21.94578999685761 56-57 21.920271338932025 27.840605336764728 28.37633246450208 21.862790859801162 58-59 21.91459766900861 27.82784088353712 28.38995904698028 21.86760240047399 60-61 21.959289415831 27.770135069175595 28.483552269694094 21.78702324529931 62-63 21.95542782298947 27.795423397613856 28.426898590891938 21.822250188504743 64-65 21.944144326872888 27.7845853226936 28.362468028495062 21.90880232193845 66-67 21.96310214339605 27.792918435801827 28.281929808636413 21.962049612165703 68-69 21.91037850432273 27.759346386582795 28.36705637127197 21.963218737822505 70-71 21.94018115038471 27.618080270763063 28.396934147549818 22.04480443130241 72-73 21.98741583241139 27.637068025990015 28.317789297099967 22.057726844498625 74-75 21.840498402629287 27.80769127271739 28.248146800246793 22.103663524406535 76-77 22.005273130390275 27.724530876424723 28.20803362488603 22.062162368298974 78-79 21.98722995921609 27.755272353282763 28.11933232170808 22.138165365793068 80-81 22.014222958492763 27.777857334569884 28.107988089544776 22.099931617392578 82-83 22.051728358555543 27.74947480343378 28.19148069112608 22.007316146884595 84-85 22.119390519145057 27.734778006483097 28.151795623455683 21.994035850916166 86-87 21.980708504029376 27.801542537733354 28.177217355297245 22.04053160294002 88-89 22.058890799434185 27.813085723534975 28.08329560462503 22.044727872405808 90-91 22.068907043513146 27.830280881410935 28.104292037473737 21.99652003760218 92-93 22.117527450608172 27.747237688504732 28.13572893225472 21.999505928632377 94-95 22.00735067767076 27.856551078808778 28.10086729731226 22.035230946208202 96-97 22.131341848228892 27.95166560484259 28.13048208445427 21.786510462474247 98-99 23.1196744643277 29.841895911139883 28.391228521222118 18.6472011033103 100 22.04816642664257 30.78634758306854 22.36604262730155 24.799443362987343 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1361.0 1 1471.5 2 1950.0 3 2424.5 4 2921.5 5 3828.0 6 4792.0 7 7147.0 8 9390.0 9 10071.0 10 10328.0 11 10561.0 12 11814.0 13 14608.0 14 20573.0 15 27973.0 16 32508.5 17 33561.0 18 32443.0 19 30027.5 20 27163.0 21 25144.0 22 25347.0 23 28671.5 24 35414.5 25 46080.0 26 60295.5 27 76675.5 28 94434.5 29 114664.5 30 135508.5 31 156295.0 32 178251.0 33 200116.5 34 221477.5 35 241090.5 36 261380.0 37 280735.0 38 296248.0 39 308826.5 40 320512.5 41 328870.5 42 333423.5 43 339584.5 44 343782.0 45 345755.0 46 345667.0 47 342404.5 48 337671.0 49 328901.5 50 317867.5 51 304314.5 52 289124.5 53 273406.5 54 255352.0 55 235591.0 56 214576.0 57 193628.5 58 171778.5 59 147741.0 60 121815.5 61 97559.5 62 75925.0 63 57416.0 64 43239.5 65 32044.5 66 23711.0 67 18160.5 68 13759.5 69 9991.0 70 7177.0 71 5014.0 72 3484.0 73 2403.5 74 1567.0 75 962.5 76 569.5 77 329.0 78 207.5 79 124.0 80 66.5 81 40.5 82 29.5 83 20.5 84 15.5 85 11.5 86 8.5 87 6.0 88 4.0 89 3.0 90 2.0 91 1.5 92 0.5 93 0.0 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002698544830876871 3 0.0 4 0.0 5 0.002480725068743312 6 7.260658737785304E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.2101677080664032E-5 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 1.2130337811106015E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 6.151161597658425E-6 42-43 0.0 44-45 0.0 46-47 6.265911499012805E-6 48-49 5.111467862119101E-4 50-51 0.0017149952323132541 52-53 0.004217575519044558 54-55 0.006256097766412355 56-57 0.006951547648166509 58-59 0.008453219252457773 60-61 0.00820435324295768 62-63 0.006132760924690819 64-65 0.0037263764369506423 66-67 0.001441343648705804 68-69 6.216459414189245E-4 70-71 2.79285274922294E-4 72-73 6.728281245451545E-4 74-75 1.3835138415371669E-5 76-77 2.788680356019666E-4 78-79 2.600873471723233E-4 80-81 4.253529649795561E-5 82-83 0.0 84-85 1.6577464292322105E-4 86-87 1.6714394741971166E-4 88-89 3.665352442330628E-5 90-91 1.4797014554343515E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 73.0 20-21 231.0 22-23 448.0 24-25 614.0 26-27 1450.0 28-29 3208.0 30-31 10725.0 32-33 14312.0 34-35 20600.0 36-37 33503.0 38-39 40035.0 40-41 40653.0 42-43 47027.0 44-45 56569.0 46-47 57348.0 48-49 53003.0 50-51 48011.0 52-53 47099.0 54-55 50765.0 56-57 53160.0 58-59 53530.0 60-61 52715.0 62-63 51218.0 64-65 54887.0 66-67 57971.0 68-69 59667.0 70-71 58371.0 72-73 54948.0 74-75 55258.0 76-77 58371.0 78-79 59865.0 80-81 60067.0 82-83 56894.0 84-85 56363.0 86-87 58797.0 88-89 61925.0 90-91 63171.0 92-93 62817.0 94-95 77503.0 96-97 256379.0 98-99 588348.0 100-101 5725814.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.25504484410614 #Duplication Level Percentage of deduplicated Percentage of total 1 90.15275540352093 77.76129960150429 2 7.0647432521319695 12.187394920494784 3 1.5972236625152378 4.133057959089579 4 0.5715987615111273 1.9721310722791126 5 0.25656134844532674 1.1064855307708 6 0.12024487540744244 0.6223036272325743 7 0.07583117871184235 0.45785752042599726 8 0.04622385543249942 0.31896325785581736 9 0.02658412353834882 0.20637132911473818 >10 0.08708856234710761 1.1164105498851988 >50 8.536055872375351E-4 0.05168254354592777 >100 2.4905742637108504E-4 0.03646090615572099 >500 4.2313424560326334E-5 0.02958118164537618 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 1.2101097896308838E-5 3 0.0 0.0 0.0 1.2101097896308838E-5 1.2101097896308838E-5 4 0.0 2.4202195792617677E-5 0.0 1.2101097896308838E-5 2.4202195792617677E-5 5 0.0 2.4202195792617677E-5 0.0 1.2101097896308838E-5 2.4202195792617677E-5 6 4.8404391585235354E-5 2.4202195792617677E-5 0.0 1.2101097896308838E-5 2.4202195792617677E-5 7 4.8404391585235354E-5 2.4202195792617677E-5 0.0 1.2101097896308838E-5 2.4202195792617677E-5 8 4.8404391585235354E-5 3.630329368892651E-5 0.0 1.2101097896308838E-5 2.4202195792617677E-5 9 4.8404391585235354E-5 7.260658737785302E-5 0.0 2.4202195792617677E-5 2.4202195792617677E-5 10-11 4.8404391585235354E-5 7.260658737785302E-5 0.0 5.445494053338977E-5 2.4202195792617677E-5 12-13 4.8404391585235354E-5 7.865713632600744E-5 0.0 6.050548948154419E-5 2.4202195792617677E-5 14-15 4.8404391585235354E-5 1.0890988106677955E-4 0.0 6.050548948154419E-5 3.630329368892651E-5 16-17 8.470768527416187E-5 1.1496043001493396E-4 0.0 9.680878317047071E-5 3.630329368892651E-5 18-19 8.470768527416187E-5 1.3311207685939722E-4 0.0 9.680878317047071E-5 3.630329368892651E-5 20-21 8.470768527416187E-5 1.4521317475570605E-4 0.0 9.680878317047071E-5 3.630329368892651E-5 22-23 8.470768527416187E-5 1.6336482160016932E-4 0.0 1.1496043001493396E-4 4.8404391585235354E-5 24-25 8.470768527416187E-5 1.87567017392787E-4 0.0 1.3311207685939722E-4 6.050548948154419E-5 26-27 8.470768527416187E-5 1.9361756634094141E-4 0.0 1.6336482160016932E-4 6.050548948154419E-5 28-29 9.680878317047071E-5 1.9361756634094141E-4 0.0 2.6622415371879444E-4 6.050548948154419E-5 30-31 9.680878317047071E-5 2.4202195792617676E-4 0.0 6.413581885043684E-4 6.050548948154419E-5 32-33 9.680878317047071E-5 2.480725068743312E-4 0.0 0.0018756701739278698 7.260658737785302E-5 34-35 1.0890988106677955E-4 3.2672964320033863E-4 0.0 0.003291498627796004 7.260658737785302E-5 36-37 1.0890988106677955E-4 3.9933623057819166E-4 0.0 0.0054152413085982055 8.470768527416187E-5 38-39 1.0890988106677955E-4 4.114373284745005E-4 0.0 0.008785397072720217 8.470768527416187E-5 40-41 1.0890988106677955E-4 4.2353842637080937E-4 0.0 0.012560939616368574 8.470768527416187E-5 42-43 1.0890988106677955E-4 4.2353842637080937E-4 0.0 0.01625177447474277 8.470768527416187E-5 44-45 1.0890988106677955E-4 4.598417200597359E-4 0.0 0.0208804444200809 9.07582342223163E-5 46-47 1.270615279112428E-4 4.961450137486624E-4 0.0 0.02578138906808598 9.680878317047071E-5 48-49 1.4521317475570605E-4 4.961450137486624E-4 0.0 0.03097276006560247 1.2101097896308838E-4 50-51 1.573142726520149E-4 5.808526990228242E-4 0.0 0.03633959698261544 1.2101097896308838E-4 52-53 1.573142726520149E-4 6.05054894815442E-4 0.0 0.041488614137494856 1.2101097896308838E-4 54-55 1.6336482160016932E-4 6.05054894815442E-4 0.0 0.04612938518072929 1.2101097896308838E-4 56-57 1.6941537054832373E-4 6.05054894815442E-4 0.0 0.050358718895489235 1.270615279112428E-4 58-59 1.6941537054832373E-4 6.05054894815442E-4 0.0 0.05464855809973071 1.3311207685939722E-4 60-61 1.6941537054832373E-4 6.353076395562141E-4 0.0 0.05890814455923142 1.3311207685939722E-4 62-63 1.6941537054832373E-4 6.595098353488317E-4 0.0 0.06335529803612493 1.3311207685939722E-4 64-65 1.6941537054832373E-4 8.22874656949001E-4 0.0 0.0673002559503216 1.3311207685939722E-4 66-67 1.6941537054832373E-4 8.349757548453098E-4 0.0 0.07159009515456309 1.3311207685939722E-4 68-69 1.6941537054832373E-4 8.531274016897731E-4 0.0 0.07586178271196012 1.3311207685939722E-4 70-71 1.7546591949647817E-4 8.894306953786996E-4 0.0 0.07952236482559354 1.4521317475570605E-4 72-73 1.9361756634094141E-4 9.136328911713172E-4 0.0 0.08269285247442645 1.6941537054832373E-4 74-75 2.0571866423725024E-4 9.559867338083982E-4 0.0 0.08511307205368822 1.6941537054832373E-4 76-77 2.0571866423725024E-4 9.741383806528615E-4 0.0 0.08720656198974963 1.6941537054832373E-4 78-79 2.0571866423725024E-4 9.801889296010158E-4 0.0 0.08861028934572146 1.6941537054832373E-4 80-81 2.0571866423725024E-4 9.801889296010158E-4 0.0 0.08913668710421091 1.87567017392787E-4 82-83 2.0571866423725024E-4 9.801889296010158E-4 0.0 0.08945131564951493 2.0571866423725024E-4 84-85 2.2992086002986793E-4 9.922900274973248E-4 0.0 0.08968123650954479 2.0571866423725024E-4 86-87 2.2992086002986793E-4 0.0010164922232899424 0.0 0.08974779254797449 2.0571866423725024E-4 88 2.2992086002986793E-4 0.0010769977127714867 0.0 0.08975384309692265 2.0571866423725024E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10365 0.0 47.733448 1 GTATCAA 18520 0.0 32.50803 1 ATCAACG 23580 0.0 29.215412 3 TCAACGC 23665 0.0 29.110476 4 CAACGCA 24185 0.0 28.520494 5 AACGCAG 24880 0.0 27.793129 6 TATCAAC 25200 0.0 27.562355 2 TGGTATC 5265 0.0 25.575947 2 GTGGTAT 5035 0.0 24.501192 1 ACGCAGA 28810 0.0 23.926458 7 CGCAGAG 29255 0.0 23.577358 8 GCAGAGT 34280 0.0 20.133898 9 GAGTACT 20535 0.0 19.872238 12-13 CAGAGTA 33445 0.0 18.759924 10-11 AGAGTAC 31005 0.0 18.604204 10-11 GTACTTT 22520 0.0 18.034101 14-15 TACATGG 23120 0.0 17.58557 2 ACATGGG 23055 0.0 17.238863 3 AGTACTT 22915 0.0 16.557234 12-13 TTATCAA 6760 0.0 16.19281 1 >>END_MODULE