##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139784_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7534869 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.20899328176774 31.0 18.0 33.0 18.0 33.0 2 29.062537782674124 31.0 27.0 33.0 18.0 33.0 3 30.991168260523175 32.0 31.0 33.0 27.0 33.0 4 31.688810117335816 33.0 31.0 33.0 29.0 33.0 5 32.523739297922766 33.0 33.0 33.0 32.0 34.0 6 36.37258378347387 38.0 37.0 38.0 34.0 38.0 7 36.56173265918757 38.0 37.0 38.0 34.0 38.0 8 36.78972242251325 38.0 38.0 38.0 35.0 38.0 9 37.022266345970976 38.0 38.0 38.0 36.0 38.0 10-11 37.120684978066635 38.0 38.0 38.0 36.0 38.0 12-13 37.18163580547983 38.0 38.0 38.0 36.0 38.0 14-15 37.1715405403863 38.0 38.0 38.0 36.0 38.0 16-17 37.12546522043051 38.0 38.0 38.0 36.0 38.0 18-19 37.15397341347275 38.0 38.0 38.0 36.0 38.0 20-21 37.179107021064475 38.0 38.0 38.0 36.0 38.0 22-23 37.18821011277265 38.0 38.0 38.0 36.0 38.0 24-25 37.19025205853135 38.0 38.0 38.0 36.0 38.0 26-27 37.16105364213725 38.0 38.0 38.0 36.0 38.0 28-29 37.1351152273747 38.0 38.0 38.0 36.0 38.0 30-31 37.13346614537441 38.0 38.0 38.0 36.0 38.0 32-33 37.12567307836778 38.0 38.0 38.0 36.0 38.0 34-35 37.107285092497804 38.0 38.0 38.0 36.0 38.0 36-37 37.09280619553026 38.0 38.0 38.0 36.0 38.0 38-39 37.07501165503999 38.0 38.0 38.0 36.0 38.0 40-41 37.05010765869524 38.0 38.0 38.0 36.0 38.0 42-43 37.02852728727028 38.0 38.0 38.0 36.0 38.0 44-45 36.982682412211965 38.0 38.0 38.0 36.0 38.0 46-47 36.963226413381335 38.0 38.0 38.0 36.0 38.0 48-49 36.93491133938065 38.0 38.0 38.0 36.0 38.0 50-51 36.89857031661926 38.0 38.0 38.0 35.5 38.0 52-53 36.86959800698743 38.0 38.0 38.0 35.0 38.0 54-55 36.836859194541276 38.0 38.0 38.0 35.0 38.0 56-57 36.83370022383323 38.0 38.0 38.0 35.0 38.0 58-59 36.8153839534339 38.0 38.0 38.0 35.0 38.0 60-61 36.81937857911683 38.0 38.0 38.0 35.0 38.0 62-63 36.80151348352854 38.0 38.0 38.0 35.0 38.0 64-65 36.78621757718189 38.0 38.0 38.0 35.0 38.0 66-67 36.77076818944983 38.0 38.0 38.0 35.0 38.0 68-69 36.775535445776015 38.0 38.0 38.0 35.0 38.0 70-71 36.74811420482075 38.0 38.0 38.0 35.0 38.0 72-73 36.725547874546294 38.0 38.0 38.0 35.0 38.0 74-75 36.73407486115022 38.0 38.0 38.0 35.0 38.0 76-77 36.70664666670021 38.0 38.0 38.0 34.5 38.0 78-79 36.678396304664076 38.0 38.0 38.0 34.0 38.0 80-81 36.66686681679151 38.0 38.0 38.0 34.0 38.0 82-83 36.604231287446865 38.0 38.0 38.0 34.0 38.0 84-85 36.5972475984742 38.0 38.0 38.0 34.0 38.0 86-87 36.57900773332243 38.0 38.0 38.0 34.0 38.0 88-89 36.5472339502773 38.0 38.0 38.0 34.0 38.0 90-91 36.52201573194019 38.0 38.0 38.0 34.0 38.0 92-93 36.521717883992245 38.0 38.0 38.0 34.0 38.0 94-95 36.464100101541014 38.0 38.0 38.0 34.0 38.0 96-97 36.42620985176798 38.0 38.0 38.0 34.0 38.0 98-99 36.448837287811244 38.0 38.0 38.0 34.0 38.0 100 34.74527836556626 38.0 34.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 19.0 19 35.0 20 68.0 21 269.0 22 868.0 23 2416.0 24 5594.0 25 11052.0 26 19238.0 27 30124.0 28 44937.0 29 63762.0 30 85732.0 31 113713.0 32 148683.0 33 201039.0 34 290676.0 35 491787.0 36 1298090.0 37 4726764.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.20802485086337 18.265785377290566 14.415671991112255 27.11051778073381 2 13.710427616460057 19.251161876463172 43.972304225624285 23.066106281452488 3 18.173162665469032 25.15138617539336 29.866066682778424 26.809384476359178 4 12.196204074682653 17.950929206599344 38.482765924663056 31.370100794054945 5 13.77023092905828 36.758684807948434 35.614703702204444 13.856380560788844 6 30.563205918514257 37.58556226097777 18.512278390160724 13.33895343034725 7 27.295803019269478 32.28212726724247 22.222775206841686 18.199294506646364 8 24.29511382347855 37.31498185303553 20.53794166826258 17.851962655223335 9 24.920804860708262 17.55267410753923 21.242506007735503 36.28401502401701 10-11 24.396893960598387 26.945378877854413 28.375476733570288 20.282250427976916 12-13 25.054383825385685 24.076112006725 28.841496779837843 22.02800738805147 14-15 21.994715502021336 25.78064064551089 26.47744771674199 25.747196135725787 16-17 21.760789736357726 29.085588614745657 27.114379825316142 22.039241823580475 18-19 21.649626556214844 28.149235242178726 28.96761708796795 21.233521113638474 20-21 22.439849800186153 27.201804489404648 28.98458120049695 21.373764509912256 22-23 22.120537325920672 27.144065110659028 28.83269829859887 21.90269926482143 24-25 21.910191028526725 27.216813303003505 28.986450595416173 21.886545073053593 26-27 21.89511113447382 27.40740917730948 28.863237698223777 21.834241989992933 28-29 21.788657005585222 27.4664675605464 28.88116195336434 21.86371348050404 30-31 22.0858140877019 27.23150635942748 28.849470087016822 21.8332094658538 32-33 21.826193884008152 27.410661231648998 28.829967388563173 21.933177495779677 34-35 22.007623689928334 27.436175534233726 28.79481874999917 21.76138202583877 36-37 21.938843292543016 27.394782594734966 28.768858524524692 21.897515588197322 38-39 21.809542666149888 27.487542981462127 28.899738438747235 21.80317591364075 40-41 22.13481145959808 27.341662576998605 28.704662911180655 21.818863052222657 42-43 21.9633506981284 27.42768938852855 28.61899804808381 21.989961865259243 44-45 22.072914538592446 27.4636640416283 28.504652077188652 21.958769342590607 46-47 22.067265899160805 27.513461007302304 28.300056240545402 22.119216852991492 48-49 21.95673393257899 27.635656304910267 28.341106544165896 22.066503218344845 50-51 22.01555307170612 27.723300976649256 28.252675373421322 22.008470578223303 52-53 22.1996732917829 27.638328776227837 28.13388625884571 22.028111673143556 54-55 22.084943311693277 27.576470100962503 28.208686103049303 22.129900484294918 56-57 22.097133055931682 27.71685945062358 28.15858438868537 22.027423104759364 58-59 22.0623790102008 27.7505251242454 28.190602523172792 21.996493342381008 60-61 22.145097028294344 27.668017952853997 28.229916613278718 21.95696840557294 62-63 22.08273851921398 27.719834204185272 28.2112128174368 21.986214459163946 64-65 22.077691220063517 27.692246454114784 28.17541523017968 22.054647095642018 66-67 22.12504085750031 27.697855596691532 28.05577768062278 22.121325865185376 68-69 22.09794672308056 27.69782752784873 28.1163340678124 22.087891681258316 70-71 22.114308417563247 27.49292272711167 28.152362470965276 22.24040638435981 72-73 22.138630400341018 27.55050810441188 28.113238367787314 22.197623127459785 74-75 21.995670501891006 27.64581950792885 28.07599625836007 22.28251373182008 76-77 22.13921083409044 27.620667832992712 27.98531525746757 22.254806075449274 78-79 22.092385353196608 27.614632784747467 27.99347105041073 22.29951081164519 80-81 22.121949387504706 27.677690890542827 27.957884938002493 22.242474783949977 82-83 22.16246133077994 27.684684733953468 27.98474940094462 22.168104534321973 84-85 22.298970345957173 27.58293840377649 27.98720273189114 22.130888518375194 86-87 22.109431282053883 27.675795544029853 28.034687042213267 22.180086131702993 88-89 22.209283282866863 27.64730238428666 27.965835562298512 22.177578770547964 90-91 22.1917485265871 27.691461178544802 28.004042984082123 22.112747310785974 92-93 22.17322841171376 27.681049879207535 28.039324888220353 22.10639682085835 94-95 22.12215010939699 27.770947470776896 27.993215436105036 22.11368698372108 96-97 22.231598415634778 27.90501013571983 28.0019025025232 21.861488946122183 98-99 23.267309961273238 29.767834981997254 28.294536029403734 18.670319027325775 100 22.116975262094925 30.699175040385086 22.238810727273574 24.945038970246415 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 670.0 1 663.5 2 1042.5 3 1554.5 4 2053.5 5 3091.0 6 4020.5 7 4878.5 8 6043.0 9 6848.5 10 7004.5 11 7283.5 12 8296.5 13 10324.5 14 14185.0 15 18804.5 16 22769.5 17 25703.0 18 26297.0 19 24694.5 20 22368.0 21 20324.0 22 19989.0 23 22506.5 24 27995.5 25 36483.0 26 48206.0 27 61914.0 28 76864.0 29 94043.5 30 112044.5 31 130700.0 32 150703.0 33 170435.5 34 190664.5 35 210551.0 36 231381.0 37 251393.5 38 266263.0 39 278197.0 40 291698.0 41 304063.0 42 311312.0 43 318289.5 44 324256.5 45 329194.0 46 331941.5 47 330494.0 48 326236.0 49 318917.0 50 310860.5 51 298790.0 52 281275.0 53 263969.0 54 246728.0 55 226139.0 56 205130.0 57 184230.5 58 161437.0 59 138213.5 60 114591.5 61 92460.0 62 72816.5 63 55920.0 64 42219.0 65 31071.0 66 22917.5 67 17467.0 68 13208.0 69 9622.0 70 6965.0 71 5010.5 72 3525.5 73 2346.5 74 1546.5 75 987.0 76 624.0 77 394.0 78 259.5 79 169.0 80 113.0 81 72.0 82 43.0 83 31.0 84 27.0 85 22.0 86 14.5 87 10.5 88 9.0 89 6.5 90 3.5 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003848772951460735 3 0.0 4 0.0 5 0.004034575783600219 6 6.635815433552993E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.6544568729064628E-5 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 6.654036861101839E-6 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 6.896448990828826E-6 48-49 4.169228136202846E-4 50-51 0.001504657299253522 52-53 0.0039239517025653065 54-55 0.0055741233591794885 56-57 0.0064141326914057915 58-59 0.007915728862683189 60-61 0.007482817254593504 62-63 0.005580465158066311 64-65 0.0034432563493315997 66-67 0.0012902202049967114 68-69 4.3359843641413496E-4 70-71 2.4124866691263976E-4 72-73 5.168772979661562E-4 74-75 1.532077372052197E-5 76-77 3.011691385960298E-4 78-79 2.2585541375037355E-4 80-81 6.285544755592877E-5 82-83 3.9629222652190484E-5 84-85 7.192883648633389E-5 86-87 6.447341539455917E-5 88-89 2.439433540763788E-5 90-91 1.6417540072957905E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 71.0 20-21 207.0 22-23 425.0 24-25 571.0 26-27 1254.0 28-29 3500.0 30-31 11348.0 32-33 14266.0 34-35 20927.0 36-37 34639.0 38-39 41888.0 40-41 41036.0 42-43 45924.0 44-45 54549.0 46-47 55340.0 48-49 52244.0 50-51 47982.0 52-53 46194.0 54-55 49501.0 56-57 51770.0 58-59 52302.0 60-61 51304.0 62-63 49160.0 64-65 51862.0 66-67 54594.0 68-69 55909.0 70-71 55271.0 72-73 51070.0 74-75 51683.0 76-77 54048.0 78-79 56052.0 80-81 56092.0 82-83 52831.0 84-85 51771.0 86-87 54172.0 88-89 57275.0 90-91 58570.0 92-93 57942.0 94-95 71037.0 96-97 234284.0 98-99 538540.0 100-101 5145464.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.90541717854973 #Duplication Level Percentage of deduplicated Percentage of total 1 89.2223837887514 75.7546371724861 2 7.631099545411351 12.958433808683836 3 1.8351538880159952 4.674435193465068 4 0.6306145698685703 2.1417037253425066 5 0.2735112659773794 1.1611294070421339 6 0.1451917921500619 0.7396541810041372 7 0.08435952187305046 0.5013806278330037 8 0.04631620266348311 0.3145997207415432 9 0.03299290387708641 0.2521148640854231 >10 0.09581949223746364 1.2317819543639956 >50 0.0017079300264126978 0.09964390504510008 >100 8.00312365152267E-4 0.12599754462674131 >500 2.439339146593378E-5 0.01797741776411231 >1k 2.439339119667225E-5 0.026510477516198647 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 1.3271630867105984E-5 3 0.0 0.0 0.0 0.0 1.3271630867105984E-5 4 0.0 1.3271630867105984E-5 0.0 0.0 1.3271630867105984E-5 5 0.0 2.6543261734211967E-5 0.0 0.0 1.3271630867105984E-5 6 0.0 2.6543261734211967E-5 0.0 0.0 1.3271630867105984E-5 7 0.0 2.6543261734211967E-5 0.0 0.0 1.3271630867105984E-5 8 0.0 2.6543261734211967E-5 0.0 0.0 2.6543261734211967E-5 9 0.0 6.635815433552992E-5 0.0 0.0 2.6543261734211967E-5 10-11 0.0 6.635815433552992E-5 0.0 0.0 2.6543261734211967E-5 12-13 0.0 6.635815433552992E-5 0.0 0.0 2.6543261734211967E-5 14-15 0.0 1.3271630867105983E-4 0.0 1.3271630867105984E-5 3.9814892601317954E-5 16-17 0.0 1.3271630867105983E-4 0.0 2.6543261734211967E-5 5.3086523468423935E-5 18-19 0.0 1.5262375497171883E-4 0.0 2.6543261734211967E-5 5.3086523468423935E-5 20-21 0.0 1.9243864757303677E-4 0.0 3.9814892601317954E-5 5.3086523468423935E-5 22-23 1.3271630867105984E-5 2.322535401743547E-4 0.0 5.3086523468423935E-5 8.62656006361889E-5 24-25 1.3271630867105984E-5 2.521609864750137E-4 0.0 7.299396976908292E-5 1.2608049323750684E-4 26-27 1.3271630867105984E-5 2.720684327756727E-4 0.0 1.1280886237040086E-4 1.3935212410461285E-4 28-29 1.3271630867105984E-5 2.787042482092257E-4 0.0 2.2561772474080172E-4 1.4598793953816584E-4 30-31 1.3271630867105984E-5 3.0524750994343766E-4 0.0 8.95835083529654E-4 1.4598793953816584E-4 32-33 1.3271630867105984E-5 3.1851914081054364E-4 0.0 0.0022694488782751235 1.5925957040527182E-4 34-35 1.3271630867105984E-5 3.981489260131795E-4 0.0 0.00403457578360022 1.5925957040527182E-4 36-37 1.3271630867105984E-5 4.910503420829214E-4 0.0 0.007133501591069466 1.658953858388248E-4 38-39 1.3271630867105984E-5 5.109577883835804E-4 0.0 0.011971011042129599 1.725312012723778E-4 40-41 1.3271630867105984E-5 5.839517581526634E-4 0.0 0.01706068147966474 1.725312012723778E-4 42-43 1.3271630867105984E-5 6.436740970546403E-4 0.0 0.021918098377025533 1.725312012723778E-4 44-45 1.3271630867105984E-5 7.697545902921471E-4 0.0 0.027405917740573858 1.725312012723778E-4 46-47 2.6543261734211967E-5 8.626560063618889E-4 0.0 0.03353741120117682 1.725312012723778E-4 48-49 3.9814892601317954E-5 8.626560063618889E-4 0.0 0.04007368940322652 1.8580283213948378E-4 50-51 3.9814892601317954E-5 9.621932378651839E-4 0.0 0.046205182863829485 1.8580283213948378E-4 52-53 3.9814892601317954E-5 9.821006841658428E-4 0.0 0.0522172316466285 1.9243864757303677E-4 54-55 3.9814892601317954E-5 0.0010152797613336077 0.0 0.058302274399196594 1.9907446300658976E-4 56-57 3.9814892601317954E-5 0.0010617304693684786 0.0 0.06481864515494562 1.9907446300658976E-4 58-59 3.9814892601317954E-5 0.0010683662848020316 0.0 0.07102976840075123 1.9907446300658976E-4 60-61 3.9814892601317954E-5 0.0010750021002355846 0.0 0.07672993385817324 1.9907446300658976E-4 62-63 3.9814892601317954E-5 0.0010816379156691376 0.0 0.08236374116125975 1.9907446300658976E-4 64-65 3.9814892601317954E-5 0.0012608049323750686 0.0 0.08755294883029818 1.9907446300658976E-4 66-67 3.9814892601317954E-5 0.0012674407478086216 0.0 0.0923771866504912 1.9907446300658976E-4 68-69 3.9814892601317954E-5 0.0013006198249763865 0.0 0.09746685708802635 1.9907446300658976E-4 70-71 3.9814892601317954E-5 0.0013072556404099395 0.0 0.10195930413654172 1.9907446300658976E-4 72-73 3.9814892601317954E-5 0.0013205272712770455 0.0 0.10539002071568862 2.2561772474080172E-4 74-75 3.9814892601317954E-5 0.0013337989021441515 0.0 0.10813061248974601 2.2561772474080172E-4 76-77 3.9814892601317954E-5 0.0013802496101790224 0.0 0.11091101915640471 2.2561772474080172E-4 78-79 3.9814892601317954E-5 0.0014067928719132343 0.0 0.1126628744308627 2.2561772474080172E-4 80-81 3.9814892601317954E-5 0.0014067928719132343 0.0 0.11330654852791734 2.2561772474080172E-4 82-83 3.9814892601317954E-5 0.0014134286873467873 0.0 0.11368479000762986 2.2561772474080172E-4 84-85 3.9814892601317954E-5 0.0014200645027803403 0.0 0.11389050028607 2.2561772474080172E-4 86-87 3.9814892601317954E-5 0.0014466077645145523 0.0 0.11397676588670619 2.2561772474080172E-4 88 3.9814892601317954E-5 0.0014864226571158702 0.0 0.11399003751757329 2.2561772474080172E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8580 0.0 46.68095 1 GTATCAA 15320 0.0 37.7193 1 TCAACGC 17205 0.0 33.25815 4 ATCAACG 17305 0.0 33.04097 3 CAACGCA 17735 0.0 32.264248 5 AACGCAG 18415 0.0 31.117962 6 TATCAAC 18935 0.0 30.495232 2 ACGCAGA 21135 0.0 27.113186 7 CGCAGAG 21410 0.0 26.764933 8 GCAGAGT 25605 0.0 22.329226 9 TACATGG 19395 0.0 21.810469 2 GTACATG 19655 0.0 21.720015 1 ACATGGG 19600 0.0 20.875072 3 GAGTACT 14830 0.0 20.39922 12-13 GTGGTAT 4805 0.0 20.163717 1 TGGTATC 4635 0.0 19.690132 2 CAGAGTA 25285 0.0 19.113998 10-11 AGAGTAC 22960 0.0 18.31828 10-11 GTACTTT 16730 0.0 18.160425 14-15 CATGGGG 14375 0.0 17.992283 4 >>END_MODULE