##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139783_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7201562 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.969577294481393 31.0 25.0 33.0 18.0 33.0 2 30.661605079564684 32.0 29.0 33.0 27.0 33.0 3 32.04640465499013 33.0 32.0 33.0 30.0 34.0 4 31.666427366729607 33.0 31.0 33.0 29.0 34.0 5 32.610675017447605 33.0 33.0 34.0 32.0 34.0 6 36.105316318876376 38.0 36.0 38.0 33.0 38.0 7 36.81944167112635 38.0 37.0 38.0 35.0 38.0 8 37.03110297460468 38.0 38.0 38.0 36.0 38.0 9 37.12591212850768 38.0 38.0 38.0 36.0 38.0 10-11 37.184468869392504 38.0 38.0 38.0 36.0 38.0 12-13 37.20588651462002 38.0 38.0 38.0 36.0 38.0 14-15 37.21491032084428 38.0 38.0 38.0 36.0 38.0 16-17 37.180085375922616 38.0 38.0 38.0 36.0 38.0 18-19 37.20470371566613 38.0 38.0 38.0 36.0 38.0 20-21 37.22678735706087 38.0 38.0 38.0 36.0 38.0 22-23 37.23288544443976 38.0 38.0 38.0 36.0 38.0 24-25 37.238630082126335 38.0 38.0 38.0 36.0 38.0 26-27 37.20904837041718 38.0 38.0 38.0 36.0 38.0 28-29 37.18129737804681 38.0 38.0 38.0 36.0 38.0 30-31 37.18399961493713 38.0 38.0 38.0 36.0 38.0 32-33 37.17611221349535 38.0 38.0 38.0 36.0 38.0 34-35 37.15763895540066 38.0 38.0 38.0 36.0 38.0 36-37 37.144141091012656 38.0 38.0 38.0 36.0 38.0 38-39 37.130137584765976 38.0 38.0 38.0 36.0 38.0 40-41 37.11348815853378 38.0 38.0 38.0 36.0 38.0 42-43 37.0956221486596 38.0 38.0 38.0 36.0 38.0 44-45 37.056491473405075 38.0 38.0 38.0 36.0 38.0 46-47 37.04131659062291 38.0 38.0 38.0 36.0 38.0 48-49 37.0183768338117 38.0 38.0 38.0 36.0 38.0 50-51 36.98520179907021 38.0 38.0 38.0 36.0 38.0 52-53 36.96173987746954 38.0 38.0 38.0 36.0 38.0 54-55 36.93717466855793 38.0 38.0 38.0 36.0 38.0 56-57 36.936254796897714 38.0 38.0 38.0 36.0 38.0 58-59 36.91790001395349 38.0 38.0 38.0 36.0 38.0 60-61 36.92761130329082 38.0 38.0 38.0 36.0 38.0 62-63 36.91487283073787 38.0 38.0 38.0 35.5 38.0 64-65 36.90569544918611 38.0 38.0 38.0 35.0 38.0 66-67 36.89245175550552 38.0 38.0 38.0 35.0 38.0 68-69 36.89644394900859 38.0 38.0 38.0 35.0 38.0 70-71 36.87375959438673 38.0 38.0 38.0 35.0 38.0 72-73 36.858935386774604 38.0 38.0 38.0 35.0 38.0 74-75 36.8700244022119 38.0 38.0 38.0 35.0 38.0 76-77 36.849431875607166 38.0 38.0 38.0 35.0 38.0 78-79 36.8242424117654 38.0 38.0 38.0 35.0 38.0 80-81 36.81420997158599 38.0 38.0 38.0 35.0 38.0 82-83 36.75974135006285 38.0 38.0 38.0 35.0 38.0 84-85 36.75897892741378 38.0 38.0 38.0 35.0 38.0 86-87 36.74737594194559 38.0 38.0 38.0 35.0 38.0 88-89 36.72190550111219 38.0 38.0 38.0 35.0 38.0 90-91 36.69950206856592 38.0 38.0 38.0 34.0 38.0 92-93 36.69841465219907 38.0 38.0 38.0 34.0 38.0 94-95 36.64092590994851 38.0 38.0 38.0 34.0 38.0 96-97 36.60515064291927 38.0 38.0 38.0 34.0 38.0 98-99 36.62761719048423 38.0 38.0 38.0 34.0 38.0 100 35.00539700740812 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 16.0 19 41.0 20 79.0 21 224.0 22 577.0 23 1715.0 24 4275.0 25 8513.0 26 15249.0 27 24463.0 28 37222.0 29 52970.0 30 72911.0 31 96599.0 32 128476.0 33 172667.0 34 251171.0 35 432194.0 36 1155814.0 37 4746384.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.92382485910696 21.432267055397148 13.991978406906725 24.651929678589173 2 14.049588268784802 21.590990515601348 40.9105578159499 23.44886339966395 3 18.767720114053034 25.219362132826184 30.17374564018195 25.83917211293883 4 12.831855089215368 17.60525008324583 38.79716650360019 30.765728323938614 5 13.4349196068877 37.788338523830625 35.325019742960336 13.451722126321341 6 30.58640807436727 37.923295732657735 18.338636586126192 13.151659606848797 7 26.980785557355475 32.575752315955896 22.549538558440517 17.89392356824811 8 24.42806157886303 37.168200454290336 20.78510189872697 17.618636068119667 9 25.10617835408485 17.16081872238273 21.247334953167105 36.48566797036531 10-11 24.28750873768774 26.99735140793067 28.69748257391938 20.017657280462213 12-13 24.89023214685925 24.235804676818724 29.032729288451588 21.841233887870438 14-15 21.888133435496353 25.90235979361144 26.566042200289324 25.643464570602877 16-17 21.690690158607257 29.105345479216872 27.27758922300468 21.9263751391712 18-19 21.640937063375972 28.28899480418276 28.975949939749185 21.094118192692086 20-21 22.363557818924697 27.374141093948072 28.939025811026852 21.32327527610038 22-23 22.053049036840207 27.34760717619747 28.78961640595084 21.80972738101148 24-25 21.854026656315867 27.3891788092392 28.913627884385374 21.84316665005956 26-27 21.826716201349626 27.573025995708655 28.777992945349308 21.822264857592415 28-29 21.778862558504247 27.659310497365297 28.78790341672585 21.773923527404605 30-31 22.04844004912539 27.45436772198734 28.758365633699317 21.738826595187955 32-33 21.825887231825554 27.6018900021007 28.720116858789474 21.85210590728427 34-35 21.96269787618524 27.60682556396114 28.734632585837367 21.695843974016256 36-37 21.927002288538155 27.5259360293586 28.73027476274239 21.816786919360855 38-39 21.792241161964967 27.664140026942263 28.808836881333317 21.734781929759457 40-41 22.094198580249383 27.536478864745067 28.622208539004852 21.747114016000697 42-43 21.914523699407003 27.592866960399803 28.53024893751242 21.962360402680773 44-45 22.039013596739377 27.647796520993325 28.428356751341475 21.884833130925827 46-47 22.01141275259017 27.654849416423243 28.26060701115208 22.073130819834503 48-49 21.946950856620116 27.734786262685297 28.31955057241256 21.998712308282023 50-51 21.95225200540024 27.894611701338928 28.201379790801617 21.95175650245921 52-53 22.124944315052222 27.84212358633647 28.062932990762988 21.969999107848317 54-55 22.05164724011554 27.748307564154494 28.145595760255887 22.05444943547408 56-57 22.04438149161582 27.860872295561812 28.118307405070613 21.976438807751755 58-59 22.051419284585972 27.89603811685003 28.119890683266274 21.932651915297726 60-61 22.09190064462524 27.838557811329608 28.20076765227362 21.868773891771536 62-63 22.072569634552337 27.8391744978695 28.15686139686874 21.93139447070942 64-65 22.04787811508494 27.824849893570025 28.12561184686132 22.001660144483715 66-67 22.064769396350595 27.844799274427995 27.987065656334988 22.103365672886426 68-69 22.080931479041492 27.815376496778164 28.060412979765893 22.04327904441445 70-71 22.057954641632687 27.642633725080263 28.09494421598076 22.20446741730629 72-73 22.10438561491529 27.683724319838714 28.06453433581731 22.14735572942869 74-75 21.99558082281575 27.79359355733079 28.022080435402202 22.188745184451257 76-77 22.07830939001573 27.755560979097993 27.966611809986723 22.19951782089955 78-79 22.075913787937793 27.769322208735016 27.948282749611415 22.206481253715776 80-81 22.05579813373163 27.78685988362567 27.92632728892765 22.231014693715053 82-83 22.115950698774256 27.785695949445582 27.9690757332349 22.12927761854526 84-85 22.24225939696409 27.71912583907707 27.953973341830768 22.084641422128072 86-87 22.075644311668764 27.77154483937539 27.972800043646544 22.180010805309298 88-89 22.161938839447828 27.782957280316207 27.921782428254886 22.133321451981082 90-91 22.180721506003056 27.791284647836523 27.935143643590006 22.092850202570414 92-93 22.17422122953122 27.715252720817713 28.008717197813738 22.10180885183733 94-95 22.08955859424474 27.850235981243788 27.9557524249584 22.104452999553075 96-97 22.185320138442442 27.942904972712178 28.019738346815 21.85203654203038 98-99 23.23262021981441 29.85474470053491 28.217773379898954 18.69486169975173 100 22.104137360381582 30.778755464340513 22.125024364648198 24.99208281062971 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 655.0 1 689.0 2 952.5 3 1381.5 4 1974.0 5 2817.0 6 3544.0 7 4494.0 8 5593.5 9 6196.5 10 6342.5 11 6494.5 12 7350.5 13 9437.0 14 13394.0 15 17892.0 16 20968.5 17 22495.0 18 22411.0 19 21115.0 20 19712.5 21 18915.0 22 19788.5 23 23050.0 24 28858.0 25 37656.0 26 49753.5 27 63910.5 28 79089.0 29 96619.0 30 113966.5 31 131682.5 32 151633.5 33 171308.0 34 190675.5 35 209949.0 36 230489.5 37 249391.5 38 262997.5 39 274269.0 40 286261.5 41 297548.0 42 305142.5 43 311262.5 44 316679.5 45 320940.0 46 322316.5 47 320383.0 48 316955.0 49 309750.0 50 299887.5 51 286863.5 52 271116.5 53 254589.5 54 237571.0 55 217762.5 56 196657.0 57 175118.0 58 153098.5 59 131824.5 60 109393.0 61 88454.0 62 69733.5 63 53778.5 64 40821.0 65 30082.0 66 21907.0 67 16564.5 68 12733.5 69 9318.5 70 6635.5 71 4743.0 72 3399.5 73 2316.0 74 1514.0 75 954.5 76 598.5 77 364.5 78 223.5 79 151.5 80 115.5 81 86.5 82 58.5 83 39.0 84 27.0 85 20.5 86 15.0 87 10.0 88 6.0 89 4.5 90 4.0 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00363809962338726 3 0.0 4 0.0 5 0.0036242137469621174 6 9.720113497599549E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 6.943318083955269E-6 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 6.967492328442571E-6 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 7.271213802625229E-6 48-49 3.0805927060366416E-4 50-51 0.0015974167995443812 52-53 0.004181087443456568 54-55 0.005957127462620527 56-57 0.007121843915092771 58-59 0.008682457019162702 60-61 0.008250991140671765 62-63 0.006058886465334303 64-65 0.003639571936139318 66-67 0.0012031508303917483 68-69 4.5547092497355074E-4 70-71 3.0659553972877106E-4 72-73 5.375307644738099E-4 74-75 0.0 76-77 2.073919983355548E-4 78-79 2.0107885508380968E-4 80-81 5.9243355709548786E-5 82-83 0.0 84-85 1.1220191511407266E-4 86-87 1.743069924383012E-4 88-89 2.641604299122943E-5 90-91 8.901063169688178E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 67.0 20-21 237.0 22-23 433.0 24-25 518.0 26-27 1588.0 28-29 4966.0 30-31 13701.0 32-33 17317.0 34-35 24272.0 36-37 40420.0 38-39 47948.0 40-41 46521.0 42-43 51762.0 44-45 59800.0 46-47 60753.0 48-49 56916.0 50-51 52827.0 52-53 52008.0 54-55 55741.0 56-57 57415.0 58-59 57738.0 60-61 56510.0 62-63 53937.0 64-65 56667.0 66-67 59376.0 68-69 60113.0 70-71 58810.0 72-73 55532.0 74-75 56064.0 76-77 58770.0 78-79 59782.0 80-81 59759.0 82-83 56282.0 84-85 55851.0 86-87 57991.0 88-89 60594.0 90-91 60748.0 92-93 59996.0 94-95 71345.0 96-97 220081.0 98-99 490192.0 100-101 4730214.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.32404809548846 #Duplication Level Percentage of deduplicated Percentage of total 1 89.40163043093101 76.28109014703841 2 7.4906906142599965 12.78272092479088 3 1.831895262939796 4.689141585629178 4 0.6280909801406149 2.1436505999144124 5 0.267884548681698 1.142849705787771 6 0.13499933019941168 0.6911213605675998 7 0.07601128732084272 0.45399135146145025 8 0.04935173775471298 0.3368712036623251 9 0.027583008779629062 0.21181445709582153 >10 0.09033323133921731 1.1287504242512902 >50 0.0011368209556060814 0.06259261386740347 >100 3.678874374085295E-4 0.05769450191852321 >500 2.4859260006262194E-5 0.01771112401487794 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3885876425142212E-5 0.0 0.0 0.0 3 0.0 1.3885876425142212E-5 0.0 0.0 0.0 4 0.0 6.942938212571107E-5 0.0 2.7771752850284425E-5 0.0 5 1.3885876425142212E-5 6.942938212571107E-5 0.0 2.7771752850284425E-5 0.0 6 1.3885876425142212E-5 6.942938212571107E-5 0.0 2.7771752850284425E-5 2.7771752850284425E-5 7 1.3885876425142212E-5 6.942938212571107E-5 0.0 2.7771752850284425E-5 2.7771752850284425E-5 8 1.3885876425142212E-5 6.942938212571107E-5 0.0 2.7771752850284425E-5 2.7771752850284425E-5 9 2.7771752850284425E-5 1.8051639352684875E-4 0.0 2.7771752850284425E-5 2.7771752850284425E-5 10-11 6.942938212571107E-5 1.9440226995199098E-4 0.0 2.7771752850284425E-5 2.7771752850284425E-5 12-13 1.110870114011377E-4 2.0828814637713317E-4 0.0 5.554350570056885E-5 2.7771752850284425E-5 14-15 1.1802994961370881E-4 2.9160340492798647E-4 0.0 5.554350570056885E-5 2.7771752850284425E-5 16-17 1.31915826038851E-4 2.9160340492798647E-4 0.0 5.554350570056885E-5 2.7771752850284425E-5 18-19 1.3885876425142213E-4 3.193751577782709E-4 0.0 5.554350570056885E-5 2.7771752850284425E-5 20-21 1.8051639352684875E-4 3.5408984884112643E-4 0.0 5.554350570056885E-5 2.7771752850284425E-5 22-23 1.8051639352684875E-4 3.95747478116553E-4 0.0 6.942938212571107E-5 2.7771752850284425E-5 24-25 1.8051639352684875E-4 4.58233922029693E-4 0.0 9.025819676342439E-5 2.7771752850284425E-5 26-27 1.8051639352684875E-4 4.8600567487997744E-4 0.0 2.0134520816456208E-4 2.7771752850284425E-5 28-29 1.9440226995199098E-4 4.8600567487997744E-4 0.0 4.58233922029693E-4 2.7771752850284425E-5 30-31 2.430028374399887E-4 5.554350570056885E-4 0.0 0.0014441311482147902 2.7771752850284425E-5 32-33 2.63831652077702E-4 5.623779952182596E-4 0.0 0.003332610342034131 2.7771752850284425E-5 34-35 2.8466046671541534E-4 7.081796976822529E-4 0.0 0.005845953974984872 2.7771752850284425E-5 36-37 3.0548928135312866E-4 8.331525855085327E-4 0.0 0.009949230458614395 2.7771752850284425E-5 38-39 3.0548928135312866E-4 8.609243383588172E-4 0.0 0.01589238556857526 2.7771752850284425E-5 40-41 3.0548928135312866E-4 9.025819676342438E-4 0.0 0.02209242939240126 4.165762927542664E-5 42-43 3.0548928135312866E-4 9.372966586970994E-4 0.0 0.028091128008062696 4.8600567487997744E-5 44-45 3.193751577782709E-4 0.0010969842375862346 0.0 0.03501323740599609 6.248644391313996E-5 46-47 3.6103278705369756E-4 0.0012080712489873724 0.0 0.042830985833351154 6.942938212571107E-5 48-49 3.8880453990398195E-4 0.0012150141871999434 0.0 0.05068344895176907 6.942938212571107E-5 50-51 3.8880453990398195E-4 0.0013885876425142212 0.0 0.058799743722264694 6.942938212571107E-5 52-53 4.0269041632912415E-4 0.0014024735189393635 0.0 0.06647863338536834 9.720113497599549E-5 54-55 4.1657629275426635E-4 0.0014094164571519345 0.0 0.07440052588591198 1.249728878262799E-4 56-57 4.304621691794086E-4 0.0014580170246399323 0.0 0.08217661668399162 1.249728878262799E-4 58-59 4.443480456045508E-4 0.0014857887774902168 0.0 0.08901541082337415 1.249728878262799E-4 60-61 4.443480456045508E-4 0.0015343893449782145 0.0 0.0960902648619841 1.249728878262799E-4 62-63 4.58233922029693E-4 0.0015552181596159278 0.0 0.1025333115232501 1.3885876425142213E-4 64-65 4.8600567487997744E-4 0.001763506305993061 0.0 0.10862921127388753 1.3885876425142213E-4 66-67 4.8600567487997744E-4 0.0018051639352684877 0.0 0.11503754324409066 1.3885876425142213E-4 68-69 4.998915513051196E-4 0.0018190498116936297 0.0 0.12148058990535665 1.3885876425142213E-4 70-71 5.137774277302619E-4 0.0018259927499062007 0.0 0.1270696551664764 1.4580170246399323E-4 72-73 5.137774277302619E-4 0.0018537645027564852 0.0 0.13142982036397105 1.5274464067656433E-4 74-75 5.137774277302619E-4 0.0019231938848821963 0.0 0.13503320529629545 1.5274464067656433E-4 76-77 5.137774277302619E-4 0.0019856803287953365 0.0 0.138213070997653 1.5968757888913546E-4 78-79 5.27663304155404E-4 0.0019995662052204786 0.0 0.14031678127606206 1.6663051710170656E-4 80-81 5.415491805805463E-4 0.0020134520816456206 0.0 0.14088610220949288 1.7357345531427765E-4 82-83 5.415491805805463E-4 0.0020134520816456206 0.0 0.14126796381118428 1.8051639352684875E-4 84-85 5.484921187931174E-4 0.0020412238344959055 0.0 0.1415595672161123 1.8051639352684875E-4 86-87 5.554350570056885E-4 0.002075938525558761 0.0 0.14167759716572598 1.8051639352684875E-4 88 5.554350570056885E-4 0.002110653216621616 0.0 0.14169148304215112 1.9440226995199098E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8095 0.0 43.28723 1 GTATCAA 13765 0.0 33.29179 1 TCAACGC 15730 0.0 28.941446 4 ATCAACG 16010 0.0 28.461914 3 CAACGCA 16445 0.0 27.605364 5 AACGCAG 16960 0.0 26.841951 6 TATCAAC 17365 0.0 26.34085 2 ACGCAGA 19880 0.0 22.813608 7 CGCAGAG 20195 0.0 22.436655 8 GTGGTAT 4625 0.0 20.185394 1 TACATGG 17910 0.0 18.827202 2 GTACATG 18325 0.0 18.726507 1 TGGTATC 4540 0.0 18.685387 2 GCAGAGT 24765 0.0 18.382374 9 ACATGGG 18565 0.0 17.725565 3 GAGTACT 14065 0.0 17.41081 12-13 AGAGTAC 21420 0.0 17.362595 10-11 CAGAGTA 23590 0.0 16.930912 10-11 TCGCGCG 375 8.039933E-10 15.913489 9 CATGGGG 13390 0.0 15.185025 4 >>END_MODULE