##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139782_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8095361 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.268934887523855 25.0 18.0 32.0 18.0 33.0 2 28.25808879925182 30.0 25.0 32.0 18.0 33.0 3 29.181808445602364 32.0 27.0 33.0 18.0 33.0 4 31.133863085290454 33.0 31.0 33.0 28.0 33.0 5 31.809035940460223 33.0 32.0 33.0 30.0 33.0 6 36.34424480884793 38.0 37.0 38.0 34.0 38.0 7 36.47542747012764 38.0 37.0 38.0 34.0 38.0 8 36.986215315166305 38.0 38.0 38.0 35.0 38.0 9 37.1025556488463 38.0 38.0 38.0 36.0 38.0 10-11 37.13787192442685 38.0 38.0 38.0 36.0 38.0 12-13 37.1754727182642 38.0 38.0 38.0 36.0 38.0 14-15 37.18760756932273 38.0 38.0 38.0 36.0 38.0 16-17 37.15360185913883 38.0 38.0 38.0 36.0 38.0 18-19 37.17729765232211 38.0 38.0 38.0 36.0 38.0 20-21 37.19684952314421 38.0 38.0 38.0 36.0 38.0 22-23 37.20290323830231 38.0 38.0 38.0 36.0 38.0 24-25 37.20422542711557 38.0 38.0 38.0 36.0 38.0 26-27 37.1757146848541 38.0 38.0 38.0 36.0 38.0 28-29 37.14985131225812 38.0 38.0 38.0 36.0 38.0 30-31 37.15086740539773 38.0 38.0 38.0 36.0 38.0 32-33 37.144462421224475 38.0 38.0 38.0 36.0 38.0 34-35 37.127649888994014 38.0 38.0 38.0 36.0 38.0 36-37 37.11630994059303 38.0 38.0 38.0 36.0 38.0 38-39 37.099122272344765 38.0 38.0 38.0 36.0 38.0 40-41 37.07761919400292 38.0 38.0 38.0 36.0 38.0 42-43 37.05134809668737 38.0 38.0 38.0 36.0 38.0 44-45 37.009922873181196 38.0 38.0 38.0 36.0 38.0 46-47 36.99372055196086 38.0 38.0 38.0 36.0 38.0 48-49 36.96796772315308 38.0 38.0 38.0 36.0 38.0 50-51 36.93131280707724 38.0 38.0 38.0 36.0 38.0 52-53 36.90342745547498 38.0 38.0 38.0 35.5 38.0 54-55 36.87202545404677 38.0 38.0 38.0 35.0 38.0 56-57 36.87212779392239 38.0 38.0 38.0 35.0 38.0 58-59 36.853549129569046 38.0 38.0 38.0 35.0 38.0 60-61 36.85909140166922 38.0 38.0 38.0 35.0 38.0 62-63 36.84167583770417 38.0 38.0 38.0 35.0 38.0 64-65 36.82984472327065 38.0 38.0 38.0 35.0 38.0 66-67 36.81417860782278 38.0 38.0 38.0 35.0 38.0 68-69 36.81595603239589 38.0 38.0 38.0 35.0 38.0 70-71 36.79201558999179 38.0 38.0 38.0 35.0 38.0 72-73 36.77123580142516 38.0 38.0 38.0 35.0 38.0 74-75 36.77988038533654 38.0 38.0 38.0 35.0 38.0 76-77 36.75314329767171 38.0 38.0 38.0 35.0 38.0 78-79 36.72407307516079 38.0 38.0 38.0 35.0 38.0 80-81 36.714003664945096 38.0 38.0 38.0 34.5 38.0 82-83 36.65443561874087 38.0 38.0 38.0 34.0 38.0 84-85 36.646195539424035 38.0 38.0 38.0 34.0 38.0 86-87 36.62911991481644 38.0 38.0 38.0 34.0 38.0 88-89 36.59910453431493 38.0 38.0 38.0 34.0 38.0 90-91 36.57639433059641 38.0 38.0 38.0 34.0 38.0 92-93 36.57362871145568 38.0 38.0 38.0 34.0 38.0 94-95 36.51187403254373 38.0 38.0 38.0 34.0 38.0 96-97 36.47353546123086 38.0 38.0 38.0 34.0 38.0 98-99 36.496845500348485 38.0 38.0 38.0 34.0 38.0 100 34.81203455189656 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 13.0 18 32.0 19 61.0 20 103.0 21 275.0 22 850.0 23 2313.0 24 5508.0 25 10734.0 26 19015.0 27 30875.0 28 45208.0 29 64899.0 30 88558.0 31 118024.0 32 155491.0 33 213760.0 34 318094.0 35 568651.0 36 1635615.0 37 4817282.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.32225159569783 23.768254436090004 14.002006828355155 24.90748713985701 2 14.317601414490374 19.6490555796237 40.306996689714026 25.726346316171906 3 17.56489920585382 24.352206158564147 31.254430778318593 26.82846385726344 4 13.073166224458674 17.410810957040702 37.99917014201096 31.51685267648966 5 13.789981052553038 36.47570074547049 35.388822908696234 14.34549529328024 6 31.13230050185594 37.50114108702637 17.917370105385178 13.449188305732513 7 27.34034961504496 32.23701821327054 22.264998435523754 18.157633736160747 8 24.658010927492917 37.235300562877924 20.277675078356605 17.829013431272553 9 25.173046637450756 16.96843414394985 20.970491618594895 36.8880276000045 10-11 24.52957934797472 26.78475981491128 28.319638864777 20.366021972337 12-13 25.04454711778758 23.963637940296916 28.78119950425929 22.21061543765621 14-15 22.123139412806914 25.633291708671173 26.138154926012565 26.105413952509345 16-17 21.98241066704746 28.86358619461195 26.92653236835269 22.227470769987896 18-19 21.950713501226197 28.039910758766656 28.587434210778245 21.4219415292289 20-21 22.64722184580116 27.104811723518324 28.582036204198292 21.665930226482224 22-23 22.393263679907438 26.99600931861072 28.46595672492723 22.14477027655461 24-25 22.188611181889076 27.118179642198083 28.5295221329133 22.163687042999545 26-27 22.147300507911485 27.28392140777101 28.47011278822525 22.098665296092257 28-29 22.104072143754617 27.31922815545199 28.48837820031877 22.08832150047462 30-31 22.34746457521145 27.178245465130452 28.430074598910952 22.044215360747145 32-33 22.072202781541943 27.30460856665557 28.44475356248074 22.178435089321745 34-35 22.257761420433216 27.327671745546816 28.404057234617962 22.010509599402006 36-37 22.24119975264759 27.259768317396134 28.377327690541577 22.1217042394147 38-39 22.076488397355117 27.398491498943734 28.459825357434976 22.065194746266172 40-41 22.36639488102674 27.25733936521133 28.32319151078232 22.053074242979612 42-43 22.216451362041294 27.30932207686076 28.23275687256217 22.241469688535776 44-45 22.248374401264357 27.380474415357696 28.155837752680846 22.215313430697105 46-47 22.287802009537053 27.407759698079516 27.97812339221541 22.32631490016803 48-49 22.208160447036164 27.461513098410766 28.03806099890523 22.292265455647843 50-51 22.23961976971408 27.54793848852013 27.922946246930003 22.289495494835787 52-53 22.423740039978078 27.47938999917205 27.80891345573827 22.287956505111595 54-55 22.32357331204418 27.437376929519836 27.88828937052822 22.350760387907766 56-57 22.27905983091141 27.54912864417507 27.88254652069247 22.289265004221047 58-59 22.27370160745414 27.55574447401744 27.87776193331655 22.292791985211878 60-61 22.34937920290293 27.53217338926926 27.940069774814198 22.178377633013614 62-63 22.355858858197543 27.546741128476153 27.885204725532336 22.21219528779397 64-65 22.30261239036312 27.511535254713472 27.85533754812583 22.33051480679758 66-67 22.326127100952075 27.580197141552752 27.77548540192897 22.31819035556619 68-69 22.31324154175876 27.50611503073997 27.824975193479684 22.355668234021582 70-71 22.295782059343146 27.36023527252337 27.898337916599374 22.445644751534108 72-73 22.339144650388217 27.42596857197659 27.81099498639778 22.423891791237413 74-75 22.212413813640254 27.558869003318787 27.766472894921808 22.462244288119155 76-77 22.34965816127593 27.465271527163544 27.736525127336893 22.448545184223637 78-79 22.2865265767938 27.470889201705578 27.72505417761608 22.51753004388454 80-81 22.36649596852936 27.500385345498056 27.647786427051564 22.485332258921023 82-83 22.403597033889447 27.502824404814408 27.723825464901996 22.369753096394145 84-85 22.414417646816986 27.4933865548417 27.72824888530092 22.36394691304039 86-87 22.319374303670678 27.523360251407585 27.754139375784348 22.40312606913739 88-89 22.373097447900854 27.498978440627564 27.7128459179583 22.41507819351328 90-91 22.402481641691974 27.574345329286672 27.67994890105155 22.34322412796981 92-93 22.40973107264927 27.504994626540284 27.725206434999127 22.360067865811317 94-95 22.33490862224881 27.577829360353 27.737609298839878 22.349652718558314 96-97 22.418932235867732 27.702746548047415 27.762882157743928 22.115439058340925 98-99 23.486299968537296 29.555541992397373 27.995662272776507 18.96249576628883 100 22.33355449313904 30.47334569279902 21.947607879113868 25.24549193494807 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 914.0 1 928.0 2 1251.0 3 1682.5 4 2060.0 5 2657.0 6 3330.5 7 4350.5 8 5606.5 9 6574.5 10 7008.0 11 7442.5 12 8614.0 13 10653.0 14 14386.0 15 18741.5 16 21928.5 17 23565.0 18 23376.5 19 21912.0 20 20244.0 21 19239.5 22 19966.0 23 23396.0 24 29620.5 25 38756.5 26 50925.5 27 65458.0 28 81021.0 29 98431.0 30 117053.5 31 136717.0 32 157329.5 33 177517.5 34 198438.5 35 218329.5 36 239436.0 37 259785.5 38 277026.5 39 292333.5 40 306648.5 41 318650.5 42 327230.5 43 335178.0 44 340986.5 45 346769.0 46 350774.0 47 350532.0 48 347895.0 49 341827.5 50 334458.5 51 324301.0 52 310281.5 53 294196.0 54 276614.0 55 258138.0 56 237469.5 57 214883.5 58 190441.5 59 164486.0 60 137835.5 61 112038.0 62 88862.5 63 69392.0 64 53039.5 65 39598.0 66 29481.0 67 22672.0 68 17501.0 69 12905.5 70 9420.5 71 6787.5 72 4649.5 73 3148.0 74 2122.0 75 1377.5 76 888.0 77 548.0 78 355.5 79 224.5 80 149.0 81 104.5 82 74.5 83 47.0 84 28.5 85 19.0 86 13.5 87 12.0 88 8.5 89 4.0 90 4.5 91 2.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0035822985534554913 3 0.0 4 0.0 5 0.004187583481453144 6 1.2352753632605143E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 3.097512096868867E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 1.9288589249941988E-5 48-49 4.340968427294351E-4 50-51 0.0014814998521763363 52-53 0.003916173903353033 54-55 0.0057956919351557345 56-57 0.00654528037628297 58-59 0.00821450179953338 60-61 0.00785864457672298 62-63 0.00563983252084283 64-65 0.0031055160216800744 66-67 0.001087308444127409 68-69 5.866372416875597E-4 70-71 2.817357145729841E-4 72-73 6.320133958434822E-4 74-75 2.8633036640193753E-5 76-77 2.742844208181298E-4 78-79 2.7668497326094576E-4 80-81 1.028566525037954E-4 82-83 1.4824324344357196E-5 84-85 1.345485760724194E-4 86-87 1.3570345959384257E-4 88-89 3.803980576570858E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 70.0 20-21 228.0 22-23 416.0 24-25 512.0 26-27 1474.0 28-29 4821.0 30-31 13080.0 32-33 16703.0 34-35 23791.0 36-37 40058.0 38-39 46750.0 40-41 45313.0 42-43 50563.0 44-45 59587.0 46-47 60349.0 48-49 57126.0 50-51 52656.0 52-53 51087.0 54-55 54983.0 56-57 57337.0 58-59 57460.0 60-61 55763.0 62-63 54040.0 64-65 56779.0 66-67 59760.0 68-69 60914.0 70-71 58677.0 72-73 56031.0 74-75 57277.0 76-77 59284.0 78-79 61478.0 80-81 60840.0 82-83 57047.0 84-85 56433.0 86-87 59320.0 88-89 61734.0 90-91 62807.0 92-93 62902.0 94-95 76957.0 96-97 252296.0 98-99 576893.0 100-101 5493765.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.98467466654283 #Duplication Level Percentage of deduplicated Percentage of total 1 90.2622361193623 77.61169007398038 2 6.896107507165272 11.859191209382193 3 1.5910773717574698 4.104248105395921 4 0.5805872621257679 1.996864273976919 5 0.2576502050581161 1.107698452984508 6 0.13939922627768866 0.7191718272152907 7 0.0788476947321195 0.4745785365823724 8 0.05297230100061127 0.36438448543005925 9 0.035616870760909906 0.2756254540515426 >10 0.10347122371174461 1.3238449739818172 >50 0.001557718366766291 0.08867287490586748 >100 4.541769064428616E-4 0.06139997135008866 >500 2.2322774805848326E-5 0.012629760763026717 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.4705507265210287E-5 2 0.0 0.0 0.0 0.0 2.4705507265210287E-5 3 0.0 1.2352753632605143E-5 0.0 0.0 2.4705507265210287E-5 4 0.0 3.7058260897815426E-5 0.0 0.0 3.7058260897815426E-5 5 0.0 3.7058260897815426E-5 0.0 0.0 3.7058260897815426E-5 6 0.0 3.7058260897815426E-5 0.0 0.0 3.7058260897815426E-5 7 0.0 3.7058260897815426E-5 0.0 1.2352753632605143E-5 3.7058260897815426E-5 8 0.0 3.7058260897815426E-5 0.0 3.7058260897815426E-5 3.7058260897815426E-5 9 0.0 7.411652179563085E-5 0.0 6.176376816302571E-5 3.7058260897815426E-5 10-11 0.0 7.411652179563085E-5 0.0 8.029289861193342E-5 3.7058260897815426E-5 12-13 0.0 8.029289861193342E-5 0.0 8.646927542823599E-5 3.7058260897815426E-5 14-15 0.0 1.1735115950974886E-4 0.0 9.264565224453858E-5 3.7058260897815426E-5 16-17 1.2352753632605143E-5 1.2352753632605143E-4 0.0 1.1735115950974886E-4 4.941101453042057E-5 18-19 1.2352753632605143E-5 1.482330435912617E-4 0.0 1.2352753632605143E-4 4.941101453042057E-5 20-21 1.2352753632605143E-5 1.8529130448907715E-4 0.0 1.2352753632605143E-4 4.941101453042057E-5 22-23 1.2352753632605143E-5 2.1617318857059E-4 0.0 1.2352753632605143E-4 6.176376816302571E-5 24-25 1.2352753632605143E-5 2.2234956538689257E-4 0.0 1.3588028995865657E-4 7.411652179563085E-5 26-27 1.2352753632605143E-5 2.2234956538689257E-4 0.0 1.8529130448907715E-4 7.411652179563085E-5 28-29 1.2352753632605143E-5 2.347023190194977E-4 0.0 4.261700003248774E-4 7.411652179563085E-5 30-31 1.2352753632605143E-5 3.211715944477337E-4 0.0 0.0013340973923213553 7.411652179563085E-5 32-33 1.2352753632605143E-5 3.5205347852924657E-4 0.0 0.0031499521763143114 8.646927542823599E-5 34-35 1.2352753632605143E-5 3.829353626107594E-4 0.0 0.005114040003898529 9.882202906084115E-5 36-37 1.2352753632605143E-5 4.138172466922723E-4 0.0 0.00838134333972259 9.882202906084115E-5 38-39 1.2352753632605143E-5 4.261700003248774E-4 0.0 0.01359420537268196 9.882202906084115E-5 40-41 1.2352753632605143E-5 4.694046380389954E-4 0.0 0.019128239000089066 9.882202906084115E-5 42-43 1.2352753632605143E-5 4.694046380389954E-4 0.0 0.024161986105375656 9.882202906084115E-5 44-45 1.2352753632605143E-5 5.249920293857186E-4 0.0 0.030344539298494535 9.882202906084115E-5 46-47 1.2352753632605143E-5 5.62050290283534E-4 0.0 0.037157082926876264 9.882202906084115E-5 48-49 1.2352753632605143E-5 5.682266670998365E-4 0.0 0.04409933046840036 9.882202906084115E-5 50-51 2.4705507265210287E-5 5.805794207324417E-4 0.0 0.05023247264698881 9.882202906084115E-5 52-53 2.4705507265210287E-5 5.805794207324417E-4 0.0 0.05679796120271845 9.882202906084115E-5 54-55 2.4705507265210287E-5 5.929321743650469E-4 0.0 0.06361668120791648 9.882202906084115E-5 56-57 2.4705507265210287E-5 6.05284927997652E-4 0.0 0.07009570048821788 9.882202906084115E-5 58-59 2.4705507265210287E-5 6.176376816302571E-4 0.0 0.0761423733913781 9.882202906084115E-5 60-61 2.4705507265210287E-5 6.485195657117699E-4 0.0 0.08227551556996655 9.882202906084115E-5 62-63 2.4705507265210287E-5 6.546959425280726E-4 0.0 0.08754396499427264 9.882202906084115E-5 64-65 2.4705507265210287E-5 6.794014497932829E-4 0.0 0.09357210876698396 9.882202906084115E-5 66-67 2.4705507265210287E-5 6.91754203425888E-4 0.0 0.09900732036533022 9.882202906084115E-5 68-69 2.4705507265210287E-5 7.473415947726112E-4 0.0 0.10434988631143194 9.882202906084115E-5 70-71 2.4705507265210287E-5 7.535179715889137E-4 0.0 0.10919834211222945 1.1117478269344629E-4 72-73 2.4705507265210287E-5 7.535179715889137E-4 0.0 0.11321298704282613 1.1117478269344629E-4 74-75 2.4705507265210287E-5 7.658707252215188E-4 0.0 0.11581941805930582 1.1117478269344629E-4 76-77 2.4705507265210287E-5 7.967526093030317E-4 0.0 0.11846290733668331 1.1117478269344629E-4 78-79 2.4705507265210287E-5 8.029289861193343E-4 0.0 0.12024170385977846 1.1117478269344629E-4 80-81 2.4705507265210287E-5 8.029289861193343E-4 0.0 0.12087787067185762 1.1735115950974886E-4 82-83 2.4705507265210287E-5 8.029289861193343E-4 0.0 0.12126080603446839 1.2352753632605143E-4 84-85 2.4705507265210287E-5 8.091053629356369E-4 0.0 0.12148315559985527 1.2352753632605143E-4 86-87 2.4705507265210287E-5 8.276344933845445E-4 0.0 0.12158815400573242 1.29703913142354E-4 88 2.4705507265210287E-5 9.264565224453857E-4 0.0 0.12160050675936503 1.3588028995865657E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8665 0.0 46.63919 1 GTATCAA 15185 0.0 33.515614 1 TCAACGC 17530 0.0 29.94143 4 ATCAACG 17915 0.0 29.273903 3 CAACGCA 18160 0.0 28.950212 5 AACGCAG 18865 0.0 27.913006 6 TATCAAC 19125 0.0 27.69344 2 ACGCAGA 22795 0.0 23.157389 7 CGCAGAG 23400 0.0 22.540234 8 TGGTATC 4745 0.0 19.542595 2 GAGTACT 14960 0.0 19.329248 12-13 GCAGAGT 28085 0.0 18.841604 9 GTGGTAT 5090 0.0 18.726406 1 TACATGG 21935 0.0 18.207626 2 GTACATG 21610 0.0 18.102247 1 CAGAGTA 27255 0.0 17.532398 10-11 ACATGGG 22150 0.0 17.368208 3 GTACTTT 16935 0.0 17.138903 14-15 AGAGTAC 24850 0.0 16.495804 10-11 CATGGGG 16510 0.0 15.072754 4 >>END_MODULE