##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139781_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6656414 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.68346485059373 32.0 18.0 33.0 18.0 33.0 2 29.618677864688102 32.0 28.0 33.0 18.0 33.0 3 31.3749152321355 33.0 32.0 33.0 27.0 33.0 4 31.81640024193207 33.0 32.0 33.0 29.0 33.0 5 32.44112415483772 33.0 33.0 33.0 32.0 34.0 6 36.07088922053226 38.0 36.0 38.0 33.0 38.0 7 36.75955251581407 38.0 37.0 38.0 34.0 38.0 8 36.67009774331945 38.0 37.0 38.0 34.0 38.0 9 36.970410644530226 38.0 38.0 38.0 35.0 38.0 10-11 37.10556284509948 38.0 38.0 38.0 36.0 38.0 12-13 37.140361762354324 38.0 38.0 38.0 36.0 38.0 14-15 37.12780274784591 38.0 38.0 38.0 36.0 38.0 16-17 37.076255398176855 38.0 38.0 38.0 36.0 38.0 18-19 37.11342901748599 38.0 38.0 38.0 36.0 38.0 20-21 37.14625385050358 38.0 38.0 38.0 36.0 38.0 22-23 37.156916773622704 38.0 38.0 38.0 36.0 38.0 24-25 37.161530305956134 38.0 38.0 38.0 36.0 38.0 26-27 37.132512526892924 38.0 38.0 38.0 36.0 38.0 28-29 37.10838973508264 38.0 38.0 38.0 36.0 38.0 30-31 37.10963870148869 38.0 38.0 38.0 36.0 38.0 32-33 37.10293751495363 38.0 38.0 38.0 36.0 38.0 34-35 37.080515303793774 38.0 38.0 38.0 36.0 38.0 36-37 37.06630250386453 38.0 38.0 38.0 36.0 38.0 38-39 37.04862922407621 38.0 38.0 38.0 36.0 38.0 40-41 37.02800967586329 38.0 38.0 38.0 36.0 38.0 42-43 37.003105708979675 38.0 38.0 38.0 36.0 38.0 44-45 36.95386366499571 38.0 38.0 38.0 36.0 38.0 46-47 36.93129554754497 38.0 38.0 38.0 36.0 38.0 48-49 36.89717918148135 38.0 38.0 38.0 36.0 38.0 50-51 36.85489565515478 38.0 38.0 38.0 35.0 38.0 52-53 36.826779224968774 38.0 38.0 38.0 35.0 38.0 54-55 36.79390218632042 38.0 38.0 38.0 35.0 38.0 56-57 36.79244192567121 38.0 38.0 38.0 35.0 38.0 58-59 36.773366012271964 38.0 38.0 38.0 35.0 38.0 60-61 36.7804396732315 38.0 38.0 38.0 35.0 38.0 62-63 36.76438014524985 38.0 38.0 38.0 35.0 38.0 64-65 36.751016270030455 38.0 38.0 38.0 35.0 38.0 66-67 36.73770177685543 38.0 38.0 38.0 35.0 38.0 68-69 36.7394544462815 38.0 38.0 38.0 35.0 38.0 70-71 36.71402232601952 38.0 38.0 38.0 34.5 38.0 72-73 36.69454029384154 38.0 38.0 38.0 34.0 38.0 74-75 36.705132210081665 38.0 38.0 38.0 34.0 38.0 76-77 36.67740052534646 38.0 38.0 38.0 34.0 38.0 78-79 36.64518879593483 38.0 38.0 38.0 34.0 38.0 80-81 36.63478335094892 38.0 38.0 38.0 34.0 38.0 82-83 36.57166993479203 38.0 38.0 38.0 34.0 38.0 84-85 36.56567911800161 38.0 38.0 38.0 34.0 38.0 86-87 36.54639750371044 38.0 38.0 38.0 34.0 38.0 88-89 36.51726967377991 38.0 38.0 38.0 34.0 38.0 90-91 36.492020381107714 38.0 38.0 38.0 34.0 38.0 92-93 36.49138535209346 38.0 38.0 38.0 34.0 38.0 94-95 36.43037143883339 38.0 38.0 38.0 34.0 38.0 96-97 36.394348148766454 38.0 38.0 38.0 34.0 38.0 98-99 36.42547030490408 38.0 37.5 38.0 34.0 38.0 100 34.712776597214365 38.0 34.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 28.0 20 89.0 21 245.0 22 789.0 23 2305.0 24 5300.0 25 10184.0 26 17361.0 27 27628.0 28 41175.0 29 57692.0 30 78575.0 31 102773.0 32 134481.0 33 179651.0 34 259467.0 35 440851.0 36 1158151.0 37 4139668.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.84187732313525 18.104973638959358 14.26590954228508 22.787239495620316 2 14.496115867006662 19.560610037314177 43.356485240865524 22.586788854813637 3 18.28828555435404 25.64607610043486 29.95166766970925 26.113970675501854 4 12.420486466136271 18.029046871183194 38.421228006551274 31.12923865612926 5 13.803993893269226 37.0039971383338 35.457648752407884 13.734360215989094 6 30.49690906913923 37.39342038627734 18.617245424672674 13.49242511991075 7 27.33321575250578 32.543047953447605 22.303856100296645 17.819880193749967 8 24.604118674108914 36.961538149520145 20.580165236116624 17.854177940254317 9 25.477471803887198 17.460737868768376 21.120320941576047 35.94146938576837 10-11 24.491588113359537 26.909556707260094 28.324627945317104 20.274227234063265 12-13 25.222672447957716 24.21451700570307 28.69156726129114 21.871243285048074 14-15 22.2067467558358 25.75370161771789 26.445462977513117 25.594088648933194 16-17 21.81667185965296 28.97170308217007 27.11948956299894 22.092135495178034 18-19 21.770310560611165 28.01779606857386 29.00002914482182 21.211864225993153 20-21 22.59331924699352 27.08388653478069 29.01593453029413 21.306859687931663 22-23 22.337905137155243 26.990048489921055 28.86939256178388 21.80265381113983 24-25 22.049179139443563 27.07182992815888 28.96806112208453 21.910929810313025 26-27 22.009337586150885 27.235835883155605 28.924037860634627 21.830788670058883 28-29 21.925512460306976 27.291448821906055 28.90969627311296 21.87334244467401 30-31 22.238172503875564 27.10564589577466 28.80216217826192 21.854019422087852 32-33 21.964470060676806 27.257387151833967 28.856613420658384 21.921529366830843 34-35 22.160326063356216 27.26427578813132 28.79895279583589 21.776445352676575 36-37 22.063759425620255 27.2285843882664 28.81238795263724 21.895268233476102 38-39 21.921236557685578 27.337957543083103 28.902641760839664 21.838164138391654 40-41 22.242268718751433 27.19045272765579 28.718610416815636 21.848668136777142 42-43 22.097280381103328 27.261187612383853 28.606528500980875 22.03500350553194 44-45 22.17354497568161 27.356927504416635 28.46634988705728 22.003177632844476 46-47 22.213522326390425 27.38893375860164 28.27093354797716 22.126610367030768 48-49 22.095688434188183 27.482649360191335 28.264151399137695 22.15751080648279 50-51 22.12353287246136 27.627066083740694 28.14115474731298 22.10824629648497 52-53 22.332135070494058 27.507877616994826 28.031164445555135 22.12882286695598 54-55 22.266275396395883 27.399217238972977 28.108661472835884 22.225845891795252 56-57 22.168635588713002 27.61147399644469 28.08517102280781 22.134719392034498 58-59 22.193503805722614 27.604811981198857 28.084047484828634 22.117636728249895 60-61 22.273592723911495 27.507417579378295 28.143870575396768 22.07511912131344 62-63 22.238310229054985 27.566365246710568 28.104942796985956 22.090381727248495 64-65 22.22986419907197 27.526869154275445 28.06879187583714 22.174474770815447 66-67 22.269982440681837 27.53405894944142 27.93758095564106 22.258377654235684 68-69 22.218816788709542 27.55183650008811 28.014613600899807 22.21473311030254 70-71 22.2349018356256 27.39084603007554 28.027968652830783 22.346283481468085 72-73 22.294529314342036 27.44027544740122 27.957671812641223 22.30752342561552 74-75 22.137984839195237 27.569172155687315 27.923186655273174 22.369656349844274 76-77 22.31374294977579 27.471326493229043 27.892022106235654 22.322908450759517 78-79 22.25360133636574 27.50380541483762 27.832209088152197 22.41038416064445 80-81 22.25346975644441 27.53330287933975 27.847598873292075 22.36562849092377 82-83 22.309202796832544 27.54316866588716 27.881743771038554 22.265884766241744 84-85 22.38331729841853 27.48195374682408 27.860178957514993 22.274549997242403 86-87 22.2308420812804 27.569471352666895 27.893895697162602 22.3057908688901 88-89 22.33453159532555 27.51701160638528 27.842375696310455 22.306081101978716 90-91 22.369013569796923 27.564201599486342 27.796339574048645 22.270445256668086 92-93 22.321280413849028 27.54384154186741 27.84510275422259 22.289775290060977 94-95 22.26455585652999 27.61209777004548 27.82334974461994 22.29999662880459 96-97 22.392783376527497 27.719571526638525 27.8407109394899 22.04693415734408 98-99 23.44297840516368 29.615847867159534 28.081326058428868 18.859847669247923 100 22.305875062760123 30.489236108161567 22.037755774042996 25.16713305503532 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 680.0 1 667.0 2 989.5 3 1465.0 4 1983.5 5 3033.5 6 4040.0 7 5077.5 8 6432.5 9 7360.0 10 7418.0 11 7439.0 12 8376.5 13 10281.5 14 13909.0 15 18455.0 16 22295.5 17 25069.5 18 25966.5 19 24750.0 20 22435.5 21 20270.5 22 19752.0 23 21954.5 24 27001.5 25 34793.0 26 45222.0 27 57093.5 28 69904.5 29 84996.5 30 101043.0 31 117256.5 32 135133.5 33 152661.0 34 170008.5 35 186187.5 36 202665.5 37 219213.5 38 231523.0 39 241643.0 40 252354.5 41 261001.0 42 267330.0 43 273472.5 44 276867.5 45 280357.0 46 282219.0 47 280728.5 48 278504.5 49 273784.5 50 267946.5 51 259030.5 52 247079.5 53 235378.0 54 221841.0 55 206163.0 56 188968.5 57 170885.0 58 152911.5 59 133115.5 60 111704.0 61 91381.0 62 72643.0 63 56566.0 64 43303.5 65 32465.5 66 24402.5 67 18946.0 68 14719.5 69 10880.0 70 7869.0 71 5677.0 72 4095.0 73 2803.5 74 1811.0 75 1200.5 76 767.5 77 430.5 78 254.5 79 172.5 80 120.0 81 76.0 82 50.0 83 37.0 84 27.5 85 17.0 86 10.0 87 7.5 88 5.0 89 2.5 90 1.5 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003470337031320468 3 0.0 4 0.0 5 0.002283511812816931 6 7.511552015845169E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 1.506955163186291E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 1.5659810044938174E-5 48-49 4.578244607873744E-4 50-51 0.0016940611465405839 52-53 0.003924637351494526 54-55 0.005613997502577721 56-57 0.006330947646963929 58-59 0.0077155336790416616 60-61 0.007438078819364729 62-63 0.005598690056268915 64-65 0.003353265984662664 66-67 0.0010987659590473023 68-69 5.882508403887911E-4 70-71 3.0100732531426885E-4 72-73 5.898493689522549E-4 74-75 8.746280972002193E-6 76-77 2.911074609960109E-4 78-79 2.2252537100765009E-4 80-81 8.983470862786017E-5 82-83 4.5330693757256315E-5 84-85 9.146249722068337E-5 86-87 1.2919006044895205E-4 88-89 2.794743162637563E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 54.0 20-21 162.0 22-23 381.0 24-25 557.0 26-27 1301.0 28-29 3637.0 30-31 11213.0 32-33 14077.0 34-35 20107.0 36-37 32800.0 38-39 38757.0 40-41 38309.0 42-43 43962.0 44-45 51999.0 46-47 52388.0 48-49 48581.0 50-51 44961.0 52-53 43093.0 54-55 45973.0 56-57 47590.0 58-59 47820.0 60-61 47003.0 62-63 45763.0 64-65 47711.0 66-67 50562.0 68-69 51029.0 70-71 50455.0 72-73 47706.0 74-75 48040.0 76-77 50255.0 78-79 51487.0 80-81 51196.0 82-83 48831.0 84-85 47907.0 86-87 50530.0 88-89 52689.0 90-91 53386.0 92-93 53270.0 94-95 65223.0 96-97 209317.0 98-99 472950.0 100-101 4473382.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.15473177192861 #Duplication Level Percentage of deduplicated Percentage of total 1 90.68780666679905 79.0387146502939 2 6.805582307865794 11.862774011876523 3 1.484203479142413 3.880660683588607 4 0.5019472432868776 1.7498830940930719 5 0.21944752241214335 0.9562944976922323 6 0.10599810081335304 0.5542941626832978 7 0.06036747088836587 0.3682917513117665 8 0.03416429424878508 0.23820639211440853 9 0.02088159246123386 0.16379366309366075 >10 0.07750497572668828 1.0090562674009222 >50 0.0015952957031857052 0.09584511667452197 >100 5.010506520953386E-4 0.0821857091769531 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5023104031690336E-5 2 0.0 3.0046208063380672E-5 0.0 0.0 1.5023104031690336E-5 3 0.0 3.0046208063380672E-5 0.0 0.0 1.5023104031690336E-5 4 0.0 6.0092416126761345E-5 0.0 1.5023104031690336E-5 1.5023104031690336E-5 5 0.0 6.0092416126761345E-5 0.0 1.5023104031690336E-5 1.5023104031690336E-5 6 0.0 6.0092416126761345E-5 0.0 1.5023104031690336E-5 1.5023104031690336E-5 7 0.0 6.0092416126761345E-5 0.0 1.5023104031690336E-5 1.5023104031690336E-5 8 0.0 6.0092416126761345E-5 0.0 1.5023104031690336E-5 1.5023104031690336E-5 9 0.0 2.2534656047535506E-4 0.0 3.0046208063380672E-5 1.5023104031690336E-5 10-11 0.0 2.4036966450704538E-4 0.0 3.755776007922584E-5 1.5023104031690336E-5 12-13 0.0 2.4036966450704538E-4 0.0 4.506931209507101E-5 2.2534656047535505E-5 14-15 0.0 3.0046208063380674E-4 0.0 5.258086411091618E-5 6.760396814260651E-5 16-17 0.0 3.0046208063380674E-4 0.0 6.0092416126761345E-5 9.013862419014202E-5 18-19 1.5023104031690336E-5 3.079736326496519E-4 0.0 8.262707217429686E-5 1.201848322535227E-4 20-21 1.5023104031690336E-5 3.154851846654971E-4 0.0 1.5023104031690337E-4 1.5023104031690337E-4 22-23 1.5023104031690336E-5 3.605544967605681E-4 0.0 1.5023104031690337E-4 2.0281190442781954E-4 24-25 1.5023104031690336E-5 3.906007048239487E-4 0.0 1.7276569636443887E-4 2.854389766021164E-4 26-27 1.5023104031690336E-5 3.906007048239487E-4 0.0 1.9530035241197436E-4 3.0046208063380674E-4 28-29 3.0046208063380672E-5 3.981122568397939E-4 0.0 3.830891528081036E-4 3.079736326496519E-4 30-31 3.0046208063380672E-5 4.657162249824004E-4 0.0 0.0010816634902817042 3.154851846654971E-4 32-33 3.0046208063380672E-5 4.657162249824004E-4 0.0 0.0027867857978785575 3.305082886971874E-4 34-35 3.0046208063380672E-5 4.95762433045781E-4 0.0 0.0046496506978081584 3.605544967605681E-4 36-37 3.0046208063380672E-5 5.258086411091617E-4 0.0 0.008014826000906795 3.605544967605681E-4 38-39 3.0046208063380672E-5 5.408317451408521E-4 0.0 0.0136034207006956 3.7557760079225843E-4 40-41 3.0046208063380672E-5 5.708779532042328E-4 0.0 0.018853995559771373 3.830891528081036E-4 42-43 3.0046208063380672E-5 5.783895052200779E-4 0.0 0.023826642994260874 4.1313536087148425E-4 44-45 3.0046208063380672E-5 6.384819213468393E-4 0.0 0.029542934078319046 4.3567001691901977E-4 46-47 3.0046208063380672E-5 6.910627854577555E-4 0.0 0.03614558830024695 4.506931209507101E-4 48-49 3.0046208063380672E-5 6.985743374736007E-4 0.0 0.042845892698380836 4.957624330457812E-4 50-51 3.0046208063380672E-5 8.337822737588137E-4 0.0 0.049741497448926704 4.957624330457812E-4 52-53 3.0046208063380672E-5 8.412938257746588E-4 0.0 0.056299082358759536 5.107855370774714E-4 54-55 3.0046208063380672E-5 8.48805377790504E-4 0.0 0.06321722176535294 5.408317451408521E-4 56-57 3.0046208063380672E-5 8.713400338380395E-4 0.0 0.06904618612964879 5.558548491725424E-4 58-59 3.0046208063380672E-5 8.788515858538847E-4 0.0 0.07493524291007139 5.633664011883877E-4 60-61 4.506931209507101E-5 8.938746898855751E-4 0.0 0.08054637226590775 5.708779532042328E-4 62-63 4.506931209507101E-5 9.164093459331106E-4 0.0 0.08611243230964902 5.708779532042328E-4 64-65 4.506931209507101E-5 9.915248660915623E-4 0.0 0.09168600390540613 5.783895052200779E-4 66-67 4.506931209507101E-5 0.0010065479701232526 0.0 0.09726708705317909 5.859010572359231E-4 68-69 4.506931209507101E-5 0.0010140595221390977 0.0 0.10296835503320556 5.934126092517684E-4 70-71 5.258086411091618E-5 0.0010215710741549428 0.0 0.10777574832334648 6.459934733626844E-4 72-73 6.0092416126761345E-5 0.0010290826261707881 0.0 0.1115540589873166 7.211089935211362E-4 74-75 6.0092416126761345E-5 0.0010591288342341686 0.0 0.11434084478519516 7.211089935211362E-4 76-77 6.0092416126761345E-5 0.0010816634902817042 0.0 0.11725532696734307 7.286205455369814E-4 78-79 6.0092416126761345E-5 0.0010966865943133946 0.0 0.11944118860395403 7.361320975528265E-4 80-81 6.0092416126761345E-5 0.0011041981463292398 0.0 0.1200045550051424 7.661783056162072E-4 82-83 6.0092416126761345E-5 0.00111922125036093 0.0 0.12035759794988712 7.962245136795878E-4 84-85 6.0092416126761345E-5 0.0011417559064084656 0.0 0.12061299071842586 7.962245136795878E-4 86-87 6.0092416126761345E-5 0.0011567790104401558 0.0 0.12074068710269524 8.112476177112781E-4 88 6.0092416126761345E-5 0.0011868252185035365 0.0 0.12074068710269524 8.112476177112781E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8475 0.0 50.57401 1 GTATCAA 15875 0.0 38.709915 1 TCAACGC 17985 0.0 33.424957 4 ATCAACG 18085 0.0 33.121166 3 CAACGCA 18460 0.0 32.51827 5 AACGCAG 18980 0.0 31.62712 6 TATCAAC 19225 0.0 31.51694 2 ACGCAGA 21575 0.0 27.803125 7 CGCAGAG 21955 0.0 27.321903 8 TGGTATC 4310 0.0 23.16426 2 GTGGTAT 4535 0.0 22.869017 1 GCAGAGT 26280 0.0 22.858181 9 GTACATG 20105 0.0 22.239202 1 TACATGG 19875 0.0 21.998562 2 GAGTACT 14675 0.0 21.20029 12-13 ACATGGG 20175 0.0 21.073093 3 CAGAGTA 25760 0.0 19.861755 10-11 CATGGGG 14530 0.0 19.368547 4 AGAGTAC 23685 0.0 18.69492 10-11 GTACTTT 16580 0.0 18.531406 14-15 >>END_MODULE