##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139780_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6710279 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.24075839469566 32.0 25.0 33.0 18.0 33.0 2 28.413161956455163 31.0 25.0 33.0 18.0 33.0 3 31.192825663433666 33.0 31.0 33.0 27.0 33.0 4 31.489661607214842 33.0 31.0 33.0 29.0 34.0 5 32.55924321477542 33.0 33.0 33.0 32.0 34.0 6 36.50443431636747 38.0 37.0 38.0 34.0 38.0 7 36.74949342642832 38.0 37.0 38.0 34.0 38.0 8 36.99212566273325 38.0 38.0 38.0 35.0 38.0 9 37.07390035496289 38.0 38.0 38.0 36.0 38.0 10-11 37.14629779179077 38.0 38.0 38.0 36.0 38.0 12-13 37.175262757330955 38.0 38.0 38.0 36.0 38.0 14-15 37.180173357918505 38.0 38.0 38.0 36.0 38.0 16-17 37.15048278916569 38.0 38.0 38.0 36.0 38.0 18-19 37.17191632419457 38.0 38.0 38.0 36.0 38.0 20-21 37.19306306203715 38.0 38.0 38.0 36.0 38.0 22-23 37.2019203863096 38.0 38.0 38.0 36.0 38.0 24-25 37.206778418433686 38.0 38.0 38.0 36.0 38.0 26-27 37.177599154750226 38.0 38.0 38.0 36.0 38.0 28-29 37.15019908671 38.0 38.0 38.0 36.0 38.0 30-31 37.151185575073285 38.0 38.0 38.0 36.0 38.0 32-33 37.14530326750496 38.0 38.0 38.0 36.0 38.0 34-35 37.12825149378591 38.0 38.0 38.0 36.0 38.0 36-37 37.11276130051671 38.0 38.0 38.0 36.0 38.0 38-39 37.09925359726853 38.0 38.0 38.0 36.0 38.0 40-41 37.08165156205273 38.0 38.0 38.0 36.0 38.0 42-43 37.06498278409033 38.0 38.0 38.0 36.0 38.0 44-45 37.0217158209081 38.0 38.0 38.0 36.0 38.0 46-47 37.005058409753055 38.0 38.0 38.0 36.0 38.0 48-49 36.977872002736866 38.0 38.0 38.0 36.0 38.0 50-51 36.94205730896503 38.0 38.0 38.0 36.0 38.0 52-53 36.919632396885945 38.0 38.0 38.0 36.0 38.0 54-55 36.89652174506418 38.0 38.0 38.0 35.5 38.0 56-57 36.901600664428955 38.0 38.0 38.0 36.0 38.0 58-59 36.89050026120148 38.0 38.0 38.0 35.0 38.0 60-61 36.903446779515534 38.0 38.0 38.0 35.5 38.0 62-63 36.89385233369429 38.0 38.0 38.0 35.0 38.0 64-65 36.88703681185875 38.0 38.0 38.0 35.0 38.0 66-67 36.88028092460331 38.0 38.0 38.0 35.0 38.0 68-69 36.88683522820781 38.0 38.0 38.0 35.0 38.0 70-71 36.866503039198534 38.0 38.0 38.0 35.0 38.0 72-73 36.850873129818375 38.0 38.0 38.0 35.0 38.0 74-75 36.86578485633716 38.0 38.0 38.0 35.0 38.0 76-77 36.84719250372844 38.0 38.0 38.0 35.0 38.0 78-79 36.823730850705104 38.0 38.0 38.0 35.0 38.0 80-81 36.81451651432459 38.0 38.0 38.0 35.0 38.0 82-83 36.75977950290725 38.0 38.0 38.0 35.0 38.0 84-85 36.76138269090053 38.0 38.0 38.0 35.0 38.0 86-87 36.7524756335588 38.0 38.0 38.0 35.0 38.0 88-89 36.726953901487896 38.0 38.0 38.0 35.0 38.0 90-91 36.70797360348932 38.0 38.0 38.0 35.0 38.0 92-93 36.70605388490799 38.0 38.0 38.0 34.5 38.0 94-95 36.65454433054444 38.0 38.0 38.0 34.0 38.0 96-97 36.62376702554593 38.0 38.0 38.0 34.0 38.0 98-99 36.65339417121237 38.0 38.0 38.0 34.0 38.0 100 35.104490206378394 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 7.0 18 15.0 19 32.0 20 59.0 21 185.0 22 550.0 23 1663.0 24 4062.0 25 8343.0 26 14824.0 27 24016.0 28 36806.0 29 51924.0 30 71512.0 31 94650.0 32 123724.0 33 166801.0 34 242010.0 35 422728.0 36 1141625.0 37 4304743.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.67599871778803 20.88485441514429 14.314486774692975 24.124660092374697 2 15.466472885430818 19.84106640087321 41.400873207816666 23.29158750587931 3 18.59699127264306 25.185450560252416 29.66328225696726 26.55427591013727 4 13.070052675902149 17.45083922740023 37.9053240558254 31.573784040872223 5 13.935311977512052 36.89067631503217 35.226568732458304 13.947442974997479 6 31.220403584236227 37.02829035842362 18.06581014897757 13.685495908362583 7 27.637747998257602 32.22035924288692 21.9273893082538 18.214503450601683 8 24.96626444295386 36.806293747249555 20.133499665215112 18.093942144581472 9 25.517180433183178 17.120241945230593 20.790134061489844 36.57244356009638 10-11 24.889061989821883 26.603402034401253 27.97265210582153 20.534883869955333 12-13 25.546150912652067 23.865714078356504 28.377203093939908 22.21093191505152 14-15 22.542535116647162 25.400836537497174 26.021615494676155 26.035012851179513 16-17 22.22327864459883 28.606440954243485 26.681088819108712 22.489191582048974 18-19 22.2007833057314 27.644990618124822 28.53083306968309 21.623393006460685 20-21 23.018693113176905 26.66259425857521 28.55402861778232 21.76468401046556 22-23 22.766841867754476 26.596996067364493 28.376227495542476 22.259934569338558 24-25 22.45943708553752 26.719140190139022 28.499563205013303 22.321859519310152 26-27 22.42441171017071 26.869033856661723 28.427378125378215 22.27917630778935 28-29 22.353491133329097 26.93762842010067 28.41544914496924 22.29343130160099 30-31 22.64529609779253 26.754127575125473 28.340075202873415 22.260501124208577 32-33 22.386431094645886 26.899954027826016 28.34528271093546 22.368332166592637 34-35 22.518979405001417 26.90208957691999 28.3776106230745 22.201320395004092 36-37 22.51897598548093 26.819247534198325 28.316669222823016 22.345107257497723 38-39 22.373934884952014 26.97455507718562 28.3740666221701 22.27744341569226 40-41 22.66585441886534 26.841938153124463 28.21759802532004 22.274609402690157 42-43 22.5457756758781 26.868628892594725 28.111332068728856 22.47426336279831 44-45 22.599512655158193 26.970539664147335 28.0105457471074 22.419401933587064 46-47 22.626489665808908 27.039960020352883 27.747811402127713 22.5857389117105 48-49 22.527499250521586 27.137444410752014 27.775279081990984 22.559777256735416 50-51 22.56112062320565 27.245025647206454 27.669009044564262 22.52484468502363 52-53 22.760343376877756 27.07937447005273 27.565103444676105 22.595178708393412 54-55 22.63319736379115 27.054099315945262 27.646427534411423 22.666275785852164 56-57 22.62631401770992 27.18711222680789 27.618919392427937 22.567654363054253 58-59 22.651836065119067 27.196806576691117 27.599244806871255 22.552112551318558 60-61 22.733700646919235 27.124848343186343 27.67202653549842 22.469424474396 62-63 22.665273805565615 27.176765403688464 27.63903785542207 22.51892293532385 64-65 22.624579775830114 27.191451987280885 27.58400273171117 22.59996550517783 66-67 22.699766070251183 27.192660700839212 27.457583716107703 22.64998951280191 68-69 22.639000959059196 27.125771871437315 27.54196864464297 22.693258524860514 70-71 22.638816139337937 26.999056281056568 27.587712988637 22.77441459096849 72-73 22.70949904243766 27.031029961637447 27.50643079340659 22.753040202518303 74-75 22.552869430810556 27.172052539233384 27.480271406286423 22.794806623669643 76-77 22.735743629144004 27.100420716041484 27.378987991141734 22.784847663672775 78-79 22.676651694287518 27.115622163861055 27.34092939739796 22.866796744453467 80-81 22.70660781122929 27.1327082495906 27.362086759293568 22.798597179886542 82-83 22.734275319579865 27.142492494927406 27.415969482820827 22.7072627026719 84-85 22.84961217585193 27.09501535744407 27.36055920633792 22.694813260366082 86-87 22.677710240454505 27.136148899562144 27.425856306293 22.76028455369035 88-89 22.72974272553315 27.13883220874052 27.35971536788761 22.77170969783872 90-91 22.79576047066084 27.165203259372955 27.35329259442249 22.685743675543716 92-93 22.74903858780273 27.14487778340556 27.392978408088993 22.713105220702722 94-95 22.699370805746756 27.18455590845103 27.391276948291782 22.72479633751043 96-97 22.800625190489534 27.333871963327493 27.34995774595854 22.515545100224433 98-99 23.90402476135763 29.227227502258412 27.55061133244246 19.3181364039415 100 22.792662934398596 30.036947205461157 21.498110977404693 25.672278882735554 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 656.0 1 658.0 2 987.5 3 1456.0 4 1913.0 5 2798.0 6 3619.0 7 4602.0 8 5806.5 9 6537.5 10 6837.0 11 7185.5 12 8238.0 13 10310.0 14 14156.5 15 18875.5 16 22297.0 17 24059.0 18 24068.5 19 22500.5 20 20395.5 21 18193.5 22 17319.5 23 19011.5 24 23057.5 25 29775.5 26 38820.5 27 49871.0 28 61990.0 29 75732.0 30 89839.5 31 104977.0 32 122030.0 33 137492.0 34 153035.5 35 168634.0 36 185357.0 37 202428.5 38 216454.5 39 226894.0 40 238360.0 41 250699.5 42 259641.5 43 267614.5 44 273902.0 45 279726.5 46 284295.5 47 285639.0 48 285309.5 49 283552.0 50 280503.5 51 273962.5 52 265113.5 53 256108.5 54 245349.5 55 230608.5 56 213096.0 57 194128.0 58 173005.5 59 150144.5 60 126117.0 61 104009.5 62 83507.0 63 64450.0 64 49068.0 65 37081.0 66 27638.0 67 21087.0 68 16191.0 69 11904.5 70 8688.0 71 6315.0 72 4562.0 73 3153.0 74 2123.5 75 1393.0 76 870.5 77 531.5 78 331.5 79 212.5 80 152.5 81 104.0 82 62.5 83 41.0 84 29.5 85 20.0 86 14.0 87 9.0 88 5.0 89 3.5 90 4.0 91 2.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004575070574561802 3 0.0 4 0.0 5 0.0029208919629124214 6 1.0431757010401505E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.4903118552072614E-5 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 2.98908714175417E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 7.597727671607975E-6 42-43 0.0 44-45 0.0 46-47 2.3272841013448444E-5 48-49 3.987819167257346E-4 50-51 0.0015597228514285999 52-53 0.003942346865604206 54-55 0.0058229329945754865 56-57 0.006494068750541173 58-59 0.00806903787711804 60-61 0.007690028280671485 62-63 0.005549398705359863 64-65 0.0033846587521509795 66-67 0.0010788149594001789 68-69 4.723160786429887E-4 70-71 2.3820488120935258E-4 72-73 4.718724146217646E-4 74-75 4.324784387874342E-5 76-77 2.703767237388321E-4 78-79 2.199831457713036E-4 80-81 1.1543054171375641E-4 82-83 8.959407790312587E-6 84-85 1.1747714753195876E-4 86-87 1.1849705265926984E-4 88-89 2.7597738310150006E-5 90-91 9.288820069053088E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 48.0 20-21 152.0 22-23 328.0 24-25 469.0 26-27 1172.0 28-29 3368.0 30-31 10637.0 32-33 13737.0 34-35 19136.0 36-37 32299.0 38-39 38649.0 40-41 37916.0 42-43 43205.0 44-45 50791.0 46-47 51680.0 48-49 48073.0 50-51 44810.0 52-53 42804.0 54-55 45730.0 56-57 47814.0 58-59 47515.0 60-61 46027.0 62-63 45065.0 64-65 47469.0 66-67 50474.0 68-69 50917.0 70-71 50271.0 72-73 47414.0 74-75 47281.0 76-77 49965.0 78-79 51051.0 80-81 51021.0 82-83 48275.0 84-85 47191.0 86-87 49446.0 88-89 52005.0 90-91 52423.0 92-93 52725.0 94-95 64204.0 96-97 211368.0 98-99 478881.0 100-101 4536473.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.13016923417221 #Duplication Level Percentage of deduplicated Percentage of total 1 89.49631867562898 76.18836754691702 2 7.407169381135535 12.611471659244936 3 1.7932895062211307 4.579891174514099 4 0.6281759335411501 2.139068941247689 5 0.273416567008831 1.1637999310444085 6 0.13688350154382284 0.6991749391075027 7 0.07979454735347447 0.4755046324115815 8 0.04946297450197535 0.33686331121429647 9 0.030695760789042587 0.23518217796685767 >10 0.10196064279748228 1.3171933447676474 >50 0.002086492871648986 0.11502230024106204 >100 6.907329854206037E-4 0.09772698011375797 >500 2.7641811865184928E-5 0.015977902908531703 >1k 2.7641809606189176E-5 0.024755158300587617 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 1.4902510014859293E-5 0.0 0.0 1.4902510014859293E-5 2 0.0 2.9805020029718586E-5 0.0 0.0 1.4902510014859293E-5 3 0.0 2.9805020029718586E-5 0.0 0.0 1.4902510014859293E-5 4 1.4902510014859293E-5 4.470753004457788E-5 0.0 2.9805020029718586E-5 1.4902510014859293E-5 5 1.4902510014859293E-5 5.961004005943717E-5 0.0 4.470753004457788E-5 1.4902510014859293E-5 6 1.6392761016345223E-4 5.961004005943717E-5 0.0 4.470753004457788E-5 1.4902510014859293E-5 7 1.6392761016345223E-4 5.961004005943717E-5 0.0 4.470753004457788E-5 1.4902510014859293E-5 8 1.6392761016345223E-4 5.961004005943717E-5 0.0 5.961004005943717E-5 1.4902510014859293E-5 9 1.6392761016345223E-4 1.0431757010401505E-4 0.0 5.961004005943717E-5 1.4902510014859293E-5 10-11 1.7137886517088187E-4 1.0431757010401505E-4 0.0 7.451255007429646E-5 1.4902510014859293E-5 12-13 1.7883012017831152E-4 1.0431757010401505E-4 0.0 7.451255007429646E-5 1.4902510014859293E-5 14-15 1.7883012017831152E-4 1.4902510014859293E-4 0.0 8.941506008915576E-5 3.725627503714823E-5 16-17 3.2785522032690445E-4 1.4902510014859293E-4 0.0 8.941506008915576E-5 8.941506008915576E-5 18-19 3.2785522032690445E-4 1.5647635515602258E-4 0.0 8.941506008915576E-5 1.0431757010401505E-4 20-21 3.2785522032690445E-4 1.7883012017831152E-4 0.0 8.941506008915576E-5 1.0431757010401505E-4 22-23 3.2785522032690445E-4 2.0118388520060044E-4 0.0 9.686631509658541E-5 1.3412259013373363E-4 24-25 3.5020898534919337E-4 2.086351402080301E-4 0.0 1.0431757010401505E-4 1.7883012017831152E-4 26-27 3.7256275037148235E-4 2.086351402080301E-4 0.0 1.1922008011887434E-4 2.1608639521545974E-4 28-29 3.8001400537891197E-4 2.1608639521545974E-4 0.0 3.204039653194748E-4 2.235376502228894E-4 30-31 4.172702804160602E-4 2.5334267025260796E-4 0.0 9.91016915988143E-4 2.3098890523031904E-4 32-33 4.172702804160602E-4 2.5334267025260796E-4 0.0 0.0026228417626152356 2.5334267025260796E-4 34-35 4.321727904309195E-4 3.1295271031204515E-4 0.0 0.004694290654680678 2.5334267025260796E-4 36-37 4.470753004457788E-4 3.7256275037148235E-4 0.0 0.008263441803239478 2.5334267025260796E-4 38-39 4.470753004457788E-4 3.7256275037148235E-4 0.0 0.012786353592749274 2.7569643527489693E-4 40-41 4.619778104606381E-4 3.874652603863416E-4 0.0 0.017972427077920308 2.8314769028232656E-4 42-43 4.619778104606381E-4 4.023677704012009E-4 0.0 0.022815742832749578 2.8314769028232656E-4 44-45 4.6942906546806776E-4 4.6942906546806776E-4 0.0 0.028396732833314384 2.8314769028232656E-4 46-47 4.768803204754974E-4 5.215878505200753E-4 0.0 0.03462598201952556 2.905989452897562E-4 48-49 4.768803204754974E-4 5.215878505200753E-4 0.0 0.04119053768107109 3.1295271031204515E-4 50-51 4.917828304903567E-4 6.259054206240903E-4 0.0 0.047337823062200544 3.353064753343341E-4 52-53 4.917828304903567E-4 6.259054206240903E-4 0.0 0.05384276868368663 3.5020898534919337E-4 54-55 4.917828304903567E-4 6.3335667563152E-4 0.0 0.0603477143051727 3.5766024035662305E-4 56-57 5.066853405052159E-4 6.706129506686681E-4 0.0 0.06636832835117587 3.5766024035662305E-4 58-59 5.066853405052159E-4 6.706129506686681E-4 0.0 0.07218775851197842 3.651114953640527E-4 60-61 5.811978905795125E-4 6.929667156909572E-4 0.0 0.0778656148276398 3.949165153937712E-4 62-63 6.11002910609231E-4 7.227717357206757E-4 0.0 0.08302188329278112 4.023677704012009E-4 64-65 6.11002910609231E-4 8.64345580861839E-4 0.0 0.08797696787272183 4.023677704012009E-4 66-67 6.11002910609231E-4 8.64345580861839E-4 0.0 0.09311833382784829 4.023677704012009E-4 68-69 6.11002910609231E-4 8.866993458841279E-4 0.0 0.09835656609807134 4.0981902540863056E-4 70-71 6.3335667563152E-4 9.016018558989872E-4 0.0 0.10296889294767028 4.470753004457788E-4 72-73 6.855154606835275E-4 9.090531109064168E-4 0.0 0.1065678491162588 4.619778104606381E-4 74-75 6.855154606835275E-4 9.314068759287057E-4 0.0 0.10930245970398549 4.619778104606381E-4 76-77 6.855154606835275E-4 9.612118959584244E-4 0.0 0.11168686130636296 4.6942906546806776E-4 78-79 6.855154606835275E-4 9.68663150965854E-4 0.0 0.11366144388333183 4.768803204754974E-4 80-81 6.855154606835275E-4 9.68663150965854E-4 0.0 0.11430225181397077 5.141365955126456E-4 82-83 6.929667156909572E-4 9.68663150965854E-4 0.0 0.1147865833894537 5.961004005943717E-4 84-85 7.004179706983867E-4 9.68663150965854E-4 0.0 0.11498031601964687 5.961004005943717E-4 86-87 7.004179706983867E-4 9.68663150965854E-4 0.0 0.11504737731471373 5.961004005943717E-4 88 7.004179706983867E-4 0.0010133706810104318 0.0 0.1150622798247286 5.961004005943717E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8280 0.0 49.547318 1 GTATCAA 14875 0.0 35.517876 1 TCAACGC 17395 0.0 30.171091 4 ATCAACG 17620 0.0 29.78582 3 CAACGCA 17990 0.0 29.173216 5 TATCAAC 18475 0.0 28.713562 2 AACGCAG 18685 0.0 28.156443 6 TGGTATC 4050 0.0 24.366543 2 GTGGTAT 4135 0.0 24.28253 1 ACGCAGA 22010 0.0 23.82461 7 CGCAGAG 22480 0.0 23.326496 8 TACATGG 20765 0.0 20.358725 2 GTACATG 20890 0.0 20.278162 1 GCAGAGT 26450 0.0 19.792736 9 ACATGGG 21330 0.0 19.191147 3 GAGTACT 14395 0.0 19.126894 12-13 CAGAGTA 25685 0.0 18.134323 10-11 GTACTTT 15705 0.0 17.435438 14-15 CATGGGG 16315 0.0 17.4047 4 AGAGTAC 23905 0.0 17.348711 10-11 >>END_MODULE