##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139779_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6979736 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.161680900251813 27.0 18.0 32.0 18.0 33.0 2 31.200452280716636 32.0 31.0 33.0 27.0 33.0 3 31.25770129414637 33.0 31.0 33.0 27.0 33.0 4 31.956560248124 33.0 32.0 33.0 29.0 34.0 5 32.33866696390809 33.0 33.0 33.0 31.0 34.0 6 36.12949186043713 38.0 36.0 38.0 33.0 38.0 7 36.54154498107092 38.0 37.0 38.0 34.0 38.0 8 36.6083823227698 38.0 37.0 38.0 34.0 38.0 9 37.00034170346844 38.0 38.0 38.0 35.0 38.0 10-11 37.047444201327956 38.0 38.0 38.0 36.0 38.0 12-13 37.1034971809822 38.0 38.0 38.0 36.0 38.0 14-15 37.09684392074428 38.0 38.0 38.0 36.0 38.0 16-17 37.06277064060876 38.0 38.0 38.0 36.0 38.0 18-19 37.12002731908485 38.0 38.0 38.0 36.0 38.0 20-21 37.16309637670957 38.0 38.0 38.0 36.0 38.0 22-23 37.18234637810207 38.0 38.0 38.0 36.0 38.0 24-25 37.185754274315244 38.0 38.0 38.0 36.0 38.0 26-27 37.16469674572124 38.0 38.0 38.0 36.0 38.0 28-29 37.14123324693476 38.0 38.0 38.0 36.0 38.0 30-31 37.14019669021478 38.0 38.0 38.0 36.0 38.0 32-33 37.13230590220316 38.0 38.0 38.0 36.0 38.0 34-35 37.11092746051605 38.0 38.0 38.0 36.0 38.0 36-37 37.09458772976373 38.0 38.0 38.0 36.0 38.0 38-39 37.07745097914005 38.0 38.0 38.0 36.0 38.0 40-41 37.05325291212198 38.0 38.0 38.0 36.0 38.0 42-43 37.03546488168151 38.0 38.0 38.0 36.0 38.0 44-45 36.98672921319237 38.0 38.0 38.0 36.0 38.0 46-47 36.96020709861983 38.0 38.0 38.0 36.0 38.0 48-49 36.92829668325042 38.0 38.0 38.0 36.0 38.0 50-51 36.888647343581496 38.0 38.0 38.0 35.5 38.0 52-53 36.859965839116384 38.0 38.0 38.0 35.0 38.0 54-55 36.83041138310495 38.0 38.0 38.0 35.0 38.0 56-57 36.830584518766955 38.0 38.0 38.0 35.0 38.0 58-59 36.813220538774935 38.0 38.0 38.0 35.0 38.0 60-61 36.8219139105628 38.0 38.0 38.0 35.0 38.0 62-63 36.80573589649748 38.0 38.0 38.0 35.0 38.0 64-65 36.792775399171276 38.0 38.0 38.0 35.0 38.0 66-67 36.77902166124268 38.0 38.0 38.0 35.0 38.0 68-69 36.78370094321076 38.0 38.0 38.0 35.0 38.0 70-71 36.758706157337585 38.0 38.0 38.0 35.0 38.0 72-73 36.73917200289843 38.0 38.0 38.0 35.0 38.0 74-75 36.746606510246366 38.0 38.0 38.0 35.0 38.0 76-77 36.7194707324676 38.0 38.0 38.0 35.0 38.0 78-79 36.692219805759464 38.0 38.0 38.0 34.0 38.0 80-81 36.68080180715033 38.0 38.0 38.0 34.0 38.0 82-83 36.62014003082052 38.0 38.0 38.0 34.0 38.0 84-85 36.614061612810424 38.0 38.0 38.0 34.0 38.0 86-87 36.59485547647246 38.0 38.0 38.0 34.0 38.0 88-89 36.566725210612844 38.0 38.0 38.0 34.0 38.0 90-91 36.54007795578408 38.0 38.0 38.0 34.0 38.0 92-93 36.54211862791705 38.0 38.0 38.0 34.0 38.0 94-95 36.484509943497 38.0 38.0 38.0 34.0 38.0 96-97 36.44549604027304 38.0 38.0 38.0 34.0 38.0 98-99 36.4721909527777 38.0 38.0 38.0 34.0 38.0 100 34.78805484165021 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 8.0 18 20.0 19 42.0 20 81.0 21 259.0 22 820.0 23 2232.0 24 5226.0 25 10357.0 26 17275.0 27 27682.0 28 41458.0 29 59090.0 30 79938.0 31 106310.0 32 140185.0 33 187960.0 34 271348.0 35 458794.0 36 1189350.0 37 4381300.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.64847667590866 18.683844202703366 17.98676912708446 23.68090999430351 2 14.48463544554586 20.336109747595316 41.8463427067761 23.33291210008273 3 18.39758695744366 24.536830619381593 30.727494564264322 26.338087858910423 4 12.603427980657148 17.455903776303288 38.14771790795526 31.792950335084306 5 13.651070380294698 36.72228110911383 35.36107693952072 14.265571571070748 6 30.801367789494407 37.33915743720136 18.17486037065336 13.684614402650878 7 27.36182285404491 32.15507004849467 22.059774180570727 18.42333291688969 8 24.560986260798405 37.19368468950688 20.242642415128596 18.00268663456612 9 25.205251316095623 17.429083277648324 20.962827247334285 36.40283815892177 10-11 24.684092636168476 26.82274086011276 28.00586583790562 20.487300665813148 12-13 25.35949067414584 24.037721484021745 28.526838264369886 22.075949577462527 14-15 22.25888629598598 25.678721945930334 26.28489816806825 25.77749359001544 16-17 21.913307322798456 28.85758143287941 26.93281665667584 22.296294587646294 18-19 21.861571841685702 27.86972172013383 28.878979090326624 21.389727347853842 20-21 22.68146838836997 26.86197859674251 28.968463051488985 21.488089963398536 22-23 22.374125654196707 26.833008064778426 28.803668416062735 21.989197864962136 24-25 22.101347468047088 26.939216136087126 28.933723612221396 22.025712783644398 26-27 22.087235025848077 27.0693903579323 28.84157617749372 22.001798438725903 28-29 22.00857311851253 27.123354018508657 28.868157288365516 21.9999155746133 30-31 22.282980814999792 26.955892422052933 28.792518235048544 21.96860852789873 32-33 21.99875544868316 27.118245951239533 28.775605300096263 22.107393299981045 34-35 22.201159977438483 27.139881681610262 28.75045599540017 21.908502345551085 36-37 22.163354085260305 27.047757354826178 28.758112352150643 22.030776207762873 38-39 21.990790216922477 27.21055514384652 28.820354797788365 21.97829984144263 40-41 22.293109795062023 27.036994978650284 28.67151714472294 21.99837808156475 42-43 22.14728129059929 27.143359979849613 28.560007797118736 22.14935093243236 44-45 22.2236564818878 27.22708158756142 28.42098084297869 22.128281087572095 46-47 22.28239433342331 27.24841535039139 28.16917821607081 22.300012100114486 48-49 22.16330901134259 27.352822441463644 28.2147048494908 22.269163697702968 50-51 22.218191297268294 27.483891857035285 28.075069830106337 22.22284701559008 52-53 22.388553130338202 27.374911900948323 27.980540333748845 22.255994634964626 54-55 22.28029299348324 27.317243472725394 28.064418062983442 22.338045470807923 56-57 22.2888215018528 27.434579547762816 28.0259266336781 22.25067231670628 58-59 22.278101516521247 27.42306421499372 28.037669090374056 22.261165178110975 60-61 22.34479289221675 27.384685526198737 28.123837097847293 22.146684483737225 62-63 22.29710521043191 27.42061770445664 28.073195627446307 22.209081457665143 64-65 22.31332834151951 27.378340427137726 28.01271919458342 22.295612036759348 66-67 22.33851100771187 27.38785034645257 27.930211997797088 22.343426648038474 68-69 22.29239070290053 27.386463113855932 27.997024682782833 22.324121500460706 70-71 22.29882755822221 27.220071232950303 28.009771229979215 22.471329978848267 72-73 22.333882461422206 27.291291250874615 27.951623659110126 22.423202628593057 74-75 22.204720150502013 27.44727248186646 27.913460185768784 22.434547181862744 76-77 22.364133665516718 27.341815337407866 27.839731909931636 22.45431908714378 78-79 22.3498224376009 27.363310419334503 27.785460997529604 22.50140614553499 80-81 22.349309661598657 27.41245582652907 27.784880976064564 22.453353535807715 82-83 22.37459773418285 27.441439631071685 27.797545761293783 22.38641687345168 84-85 22.47633397018037 27.375732848708275 27.799564044548227 22.348369136563132 86-87 22.327042957878422 27.40329057917873 27.842536889806475 22.427129573136373 88-89 22.414211509383303 27.443598592341957 27.737285044783455 22.404904853491285 90-91 22.44927425375499 27.4616355563765 27.760508481051037 22.32858170881747 92-93 22.42185243265165 27.42777464177704 27.81437373309647 22.33599919247484 94-95 22.358388410030948 27.475504729123884 27.809011005698085 22.35709585514708 96-97 22.411811838589937 27.64678241669607 27.80876750603144 22.132638238682556 98-99 23.50968653923153 29.515342845918298 28.01737942966136 18.957591185188814 100 22.38742315178427 30.451180948425154 21.96456766244301 25.196828237347567 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1164.0 1 1112.0 2 1322.5 3 1761.5 4 2259.5 5 2996.5 6 3790.0 7 5385.0 8 7110.5 9 8008.0 10 8311.5 11 8530.5 12 9587.5 13 12000.5 14 16508.5 15 21822.5 16 25708.0 17 27420.5 18 26966.5 19 24833.0 20 22220.5 21 20135.5 22 19692.0 23 21880.0 24 26807.5 25 34556.0 26 44925.0 27 56691.5 28 69441.0 29 84385.5 30 100309.5 31 116959.0 32 134862.0 33 151826.0 34 168534.0 35 185099.0 36 202382.0 37 219120.0 38 232796.0 39 244604.0 40 257373.0 41 267981.5 42 275483.5 43 284270.5 44 290570.5 45 295581.5 46 298484.0 47 298372.5 48 298446.0 49 294719.0 50 287399.5 51 277148.5 52 265320.0 53 252853.5 54 238117.5 55 220463.5 56 201630.5 57 182543.5 58 161618.5 59 139443.5 60 116809.0 61 95954.0 62 76201.0 63 58600.0 64 44736.5 65 33482.0 66 24798.0 67 18836.0 68 14356.0 69 10609.5 70 7969.5 71 5926.0 72 4294.0 73 3062.0 74 2096.0 75 1421.5 76 936.0 77 592.0 78 357.5 79 207.5 80 142.0 81 95.0 82 61.5 83 44.0 84 32.0 85 26.5 86 19.5 87 12.0 88 6.5 89 3.5 90 2.5 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003295253574060681 3 0.0 4 0.0 5 0.0036391061209191866 6 1.002903261670642E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.4327957197233787E-5 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 7.183142256960537E-6 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 4.577235636315667E-4 50-51 0.0015493627735437767 52-53 0.00403243999063561 54-55 0.00582852435396437 56-57 0.006665055430658622 58-59 0.00826928587488617 60-61 0.007791228892914922 62-63 0.005679138159233569 64-65 0.003320703801721253 66-67 0.0011848634336813924 68-69 4.6009848367683587E-4 70-71 2.604786278506842E-4 72-73 5.005974753966598E-4 74-75 0.0 76-77 3.8351793329856104E-4 78-79 3.111210819344937E-4 80-81 1.1877140483411495E-4 82-83 3.423355603973215E-5 84-85 1.208109451954954E-4 86-87 1.4794104357960237E-4 88-89 1.755972501470627E-5 90-91 1.7726742093363382E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 61.0 20-21 210.0 22-23 426.0 24-25 556.0 26-27 1290.0 28-29 3121.0 30-31 10348.0 32-33 13316.0 34-35 19111.0 36-37 32243.0 38-39 38667.0 40-41 37525.0 42-43 43466.0 44-45 51293.0 46-47 52230.0 48-49 48831.0 50-51 44974.0 52-53 42508.0 54-55 46101.0 56-57 47968.0 58-59 48133.0 60-61 47069.0 62-63 44859.0 64-65 47433.0 66-67 50877.0 68-69 51770.0 70-71 50730.0 72-73 47208.0 74-75 47845.0 76-77 50278.0 78-79 52385.0 80-81 52395.0 82-83 48288.0 84-85 48459.0 86-87 49898.0 88-89 52943.0 90-91 54177.0 92-93 53784.0 94-95 66011.0 96-97 218944.0 98-99 499858.0 100-101 4762147.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.05851717553328 #Duplication Level Percentage of deduplicated Percentage of total 1 90.0453382618424 77.49168289383469 2 7.159612507319083 12.322912718625645 3 1.624538357508632 4.194160864259077 4 0.5773610934350084 1.9874735830344537 5 0.23156192959282773 0.9963938147531998 6 0.12728350758605267 0.6572297954253861 7 0.07440845191730408 0.44824367261311093 8 0.03920998066955214 0.26994822359223847 9 0.02600427103626616 0.20141001050505603 >10 0.09247765414360516 1.206492261513962 >50 0.0015487305463339378 0.09117919777238565 >100 5.790049049433093E-4 0.0871582908680692 >500 7.624949803237834E-5 0.04571467320260198 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.4327189452437743E-5 0.0 4 0.0 1.4327189452437743E-5 0.0 4.2981568357313227E-5 0.0 5 0.0 1.4327189452437743E-5 0.0 4.2981568357313227E-5 0.0 6 0.0 1.4327189452437743E-5 0.0 5.730875780975097E-5 0.0 7 0.0 1.4327189452437743E-5 0.0 5.730875780975097E-5 0.0 8 0.0 1.4327189452437743E-5 0.0 7.16359472621887E-5 0.0 9 0.0 1.1461751561950195E-4 0.0 7.16359472621887E-5 0.0 10-11 0.0 1.1461751561950195E-4 0.0 7.879954198840758E-5 0.0 12-13 0.0 1.289447050719397E-4 0.0 8.596313671462645E-5 0.0 14-15 0.0 1.5043548925059629E-4 0.0 8.596313671462645E-5 0.0 16-17 0.0 1.5759908397681516E-4 0.0 1.002903261670642E-4 0.0 18-19 0.0 1.719262734292529E-4 0.0 1.3610829979815854E-4 0.0 20-21 0.0 1.8625346288169065E-4 0.0 1.432718945243774E-4 0.0 22-23 0.0 1.8625346288169065E-4 0.0 1.5759908397681516E-4 7.163594726218872E-6 24-25 0.0 2.2207143651278502E-4 0.0 1.6476267870303403E-4 1.4327189452437743E-5 26-27 0.0 2.292350312390039E-4 0.0 2.3639862596522277E-4 1.4327189452437743E-5 28-29 0.0 2.292350312390039E-4 0.0 4.011613046682568E-4 1.4327189452437743E-5 30-31 0.0 2.578894101438794E-4 0.0 9.455945038608911E-4 1.4327189452437743E-5 32-33 0.0 2.578894101438794E-4 0.0 0.0023066775018424765 2.8654378904875487E-5 34-35 0.0 3.2236176267984925E-4 0.0 0.004133394157028288 2.8654378904875487E-5 36-37 0.0 3.939977099420379E-4 0.0 0.007328357404921906 2.8654378904875487E-5 38-39 0.0 4.011613046682568E-4 0.0 0.012013348355869046 2.8654378904875487E-5 40-41 0.0 4.7279725193044553E-4 0.0 0.017056519043127133 2.8654378904875487E-5 42-43 0.0 4.7279725193044553E-4 0.0 0.02183463672551512 2.8654378904875487E-5 44-45 0.0 5.157788202877588E-4 0.0 0.027021079307297583 2.8654378904875487E-5 46-47 0.0 5.58760388645072E-4 0.0 0.03329638828746531 2.8654378904875487E-5 48-49 0.0 5.58760388645072E-4 0.0 0.039285153478584287 2.8654378904875487E-5 50-51 0.0 6.375599306334796E-4 0.0 0.04505184723319048 2.8654378904875487E-5 52-53 0.0 6.518871200859172E-4 0.0 0.05082570458252289 2.8654378904875487E-5 54-55 0.0 7.020322831694494E-4 0.0 0.056449126442604705 2.8654378904875487E-5 56-57 0.0 7.306866620743249E-4 0.0 0.06249520039153344 2.8654378904875487E-5 58-59 0.0 7.450138515267626E-4 0.0 0.0684409840142951 2.8654378904875487E-5 60-61 0.0 7.665046357054192E-4 0.0 0.07412171463218667 2.8654378904875487E-5 62-63 4.2981568357313227E-5 7.879954198840759E-4 0.0 0.07948008348739838 2.8654378904875487E-5 64-65 4.2981568357313227E-5 8.739585565987023E-4 0.0 0.08451609057993024 2.8654378904875487E-5 66-67 4.2981568357313227E-5 8.811221513249212E-4 0.0 0.08950911610410481 2.8654378904875487E-5 68-69 4.2981568357313227E-5 8.882857460511401E-4 0.0 0.09453795960191044 2.8654378904875487E-5 70-71 5.01451630835321E-5 9.026129355035778E-4 0.0 0.09880746205873689 2.8654378904875487E-5 72-73 5.730875780975097E-5 9.169401249560156E-4 0.0 0.10254685850582314 2.8654378904875487E-5 74-75 5.730875780975097E-5 9.312673144084533E-4 0.0 0.10543378718048935 2.8654378904875487E-5 76-77 5.730875780975097E-5 9.670852880395476E-4 0.0 0.10796253611884461 4.2981568357313227E-5 78-79 5.730875780975097E-5 9.957396669444231E-4 0.0 0.10960299931114872 6.447235253596983E-5 80-81 5.730875780975097E-5 0.00101723045112308 0.0 0.11024772283650844 7.16359472621887E-5 82-83 5.730875780975097E-5 0.0010315576405755175 0.0 0.11084946479351082 7.16359472621887E-5 84-85 5.730875780975097E-5 0.0010315576405755175 0.0 0.11100706387748763 7.16359472621887E-5 86-87 5.730875780975097E-5 0.0010315576405755175 0.0 0.11108586341947604 7.16359472621887E-5 88 5.730875780975097E-5 0.0011031935878377062 0.0 0.1111073542036547 7.16359472621887E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8840 0.0 49.090443 1 GTATCAA 15945 0.0 36.387527 1 TCAACGC 19105 0.0 31.658686 4 ATCAACG 19290 0.0 31.26535 3 CAACGCA 19845 0.0 30.521767 5 TATCAAC 20425 0.0 29.846762 2 AACGCAG 20425 0.0 29.69678 6 ACGCAGA 23460 0.0 25.854933 7 CGCAGAG 23795 0.0 25.47275 8 GTGGTAT 4545 0.0 23.70357 1 TGGTATC 4535 0.0 22.80179 2 GCAGAGT 28140 0.0 21.585712 9 GAGTACT 16130 0.0 20.867414 12-13 TACATGG 20465 0.0 19.682772 2 CAGAGTA 27260 0.0 19.306772 10-11 GTACTTT 17660 0.0 18.92527 14-15 GTACATG 20980 0.0 18.910898 1 AGAGTAC 25170 0.0 18.898853 10-11 ACATGGG 20970 0.0 18.44471 3 AGTACTT 17875 0.0 17.341774 12-13 >>END_MODULE