##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139776_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9295249 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.499066458574696 34.0 31.0 34.0 31.0 34.0 2 32.68496884806421 34.0 31.0 34.0 31.0 34.0 3 32.779218932166316 34.0 31.0 34.0 31.0 34.0 4 36.198939910055124 37.0 37.0 37.0 35.0 37.0 5 36.043208094801976 37.0 35.0 37.0 35.0 37.0 6 36.072512312472746 37.0 35.0 37.0 35.0 37.0 7 36.08924968013229 37.0 35.0 37.0 35.0 37.0 8 36.086205974686635 37.0 35.0 37.0 35.0 37.0 9 37.96123449732223 39.0 38.0 39.0 35.0 39.0 10-11 37.844210520880075 39.0 38.0 39.0 35.0 39.0 12-13 37.86915692091734 39.0 38.0 39.0 35.0 39.0 14-15 39.18414143612506 40.0 39.0 41.0 36.0 41.0 16-17 39.15415972181057 40.0 39.0 41.0 36.0 41.0 18-19 39.18809442329086 40.0 39.0 41.0 36.0 41.0 20-21 39.22761271495892 40.0 39.0 41.0 36.0 41.0 22-23 39.189554467445404 40.0 39.0 41.0 36.0 41.0 24-25 39.17288459986714 40.0 39.0 41.0 36.0 41.0 26-27 39.06778586846056 40.0 39.0 41.0 36.0 41.0 28-29 38.98924758344083 40.0 39.0 41.0 35.0 41.0 30-31 38.867697318491444 40.0 38.0 41.0 35.0 41.0 32-33 38.806281422277266 40.0 38.0 41.0 35.0 41.0 34-35 38.7504953566127 40.0 38.0 41.0 35.0 41.0 36-37 38.67765240558019 40.0 38.0 41.0 35.0 41.0 38-39 38.59075419276783 40.0 38.0 41.0 35.0 41.0 40-41 38.57817172543877 40.0 38.0 41.0 35.0 41.0 42-43 38.52476915259051 40.0 38.0 41.0 34.5 41.0 44-45 38.492057038118034 40.0 38.0 41.0 34.0 41.0 46-47 38.385731398315684 40.0 38.0 41.0 34.0 41.0 48-49 38.36849422983683 40.0 38.0 41.0 34.0 41.0 50-51 38.28029334896664 40.0 38.0 41.0 34.0 41.0 52-53 38.10489790853014 40.0 37.0 41.0 33.5 41.0 54-55 37.95282611023429 40.0 37.0 41.0 33.0 41.0 56-57 37.74807852087481 39.0 36.5 41.0 33.0 41.0 58-59 37.51555944973891 39.0 36.0 41.0 33.0 41.0 60-61 37.340247557007054 39.0 35.5 41.0 32.5 41.0 62-63 37.16028305827966 39.0 35.0 40.0 32.0 41.0 64-65 36.88475749748418 38.0 35.0 40.0 32.0 41.0 66-67 36.67457457851178 37.5 35.0 40.0 32.0 41.0 68-69 36.38794210168476 37.0 35.0 40.0 32.0 41.0 70-71 36.044722178320086 36.5 35.0 39.0 31.0 41.0 72-73 35.788113467805616 36.0 35.0 39.0 31.0 40.5 74-75 35.44005810984435 35.5 34.0 38.5 31.0 40.0 76-77 33.45539138147031 34.5 32.0 36.0 28.0 39.0 78-79 34.6009337605776 35.0 34.0 37.0 30.5 39.0 80-81 34.58877868485179 35.0 34.0 36.5 31.0 39.0 82-83 34.364870046487354 35.0 34.0 36.0 31.0 37.5 84-85 34.11355540507207 35.0 34.0 36.0 30.5 37.0 86-87 33.924675076762455 35.0 34.0 35.0 30.0 37.0 88-89 33.73725116410898 35.0 34.0 35.0 30.0 36.0 90-91 33.70347778624191 35.0 34.0 35.0 30.0 36.0 92-93 33.63392913423134 35.0 34.0 35.0 30.0 36.0 94-95 33.56362320056677 35.0 34.0 35.0 30.0 36.0 96-97 33.57628172407077 35.0 34.0 35.0 30.0 35.0 98-99 33.64319897661045 35.0 34.0 35.0 31.0 35.0 100-101 32.39070157172897 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 4.0 19 26.0 20 54.0 21 188.0 22 741.0 23 2414.0 24 6162.0 25 13115.0 26 24290.0 27 40134.0 28 59250.0 29 83280.0 30 110827.0 31 146368.0 32 195487.0 33 272163.0 34 408040.0 35 644559.0 36 1186603.0 37 2238176.0 38 2610939.0 39 1226991.0 40 25436.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.734960623432464 19.665809920745534 12.998662004643446 24.600567451178552 2 15.44261382206798 21.24683622880841 39.74628292522128 23.564267023902328 3 18.614016009419228 25.876081277000996 30.359908544654196 25.14999416892558 4 12.951961441517156 17.475134152876453 37.60314890116694 31.96975550443945 5 13.288995978267174 37.82684849579576 35.37686518712198 13.507290338815094 6 30.876674020632777 36.94889766353878 18.340734814949332 13.833693500879107 7 26.92591666990309 32.346976396221336 22.708977457193456 18.01812947668212 8 25.448573485537334 35.65171608190167 21.176130502867917 17.723579929693077 9 26.15452143925665 15.856749951453516 20.572100806705386 37.41662780258444 10-11 24.822202559740923 26.14223892044909 28.5775284949536 20.45803002485638 12-13 25.4657291899705 23.738215131827484 28.633368137902476 22.162687540299544 14-15 22.572250128372115 25.04942581920666 26.024429915387902 26.35389413703332 16-17 22.414461041166476 28.247831759350433 26.690018481564 22.64768871791909 18-19 22.54301095107834 27.35848173620739 28.22669946765278 21.871807845061493 20-21 23.1212089555338 26.61447027128275 28.080962115564596 22.18335865761885 22-23 22.860999780177522 26.74465397219649 27.945102052827764 22.449244194798222 24-25 22.758781062814453 26.86429626885387 28.057171201522706 22.31975146680897 26-27 22.669032749684686 27.030804165259525 28.02674405381376 22.27341903124203 28-29 22.581286657967873 27.00039858998926 27.96970285057035 22.44861190147252 30-31 22.709571627998262 27.00245424974495 28.0305502934922 22.257423828764583 32-33 22.611791392096286 27.132914608704713 27.90818969053027 22.34710430866873 34-35 22.82768421173127 26.98461134250515 27.98650664774087 22.20119779802271 36-37 22.547447898948757 27.181023004677378 27.870514598214776 22.401014498159093 38-39 22.409850180911885 26.975016083679005 28.03668605963609 22.578447675773024 40-41 22.591756813425672 26.85538200780892 28.0071059202934 22.54575525847201 42-43 22.647955548592 26.88659368234938 27.828696386069794 22.636754382988823 44-45 22.478475392183856 27.088947646102095 27.745788045207565 22.68678891650648 46-47 22.84032836206589 26.884220274562697 27.315398651449428 22.96005271192198 48-49 22.577306437258972 27.065387125482054 27.34736873331356 23.009937703945415 50-51 22.54596122199381 27.221092056732193 27.41250088442502 22.820445836848975 52-53 22.743679252606988 27.091784061275582 27.37205887855217 22.792477807565263 54-55 22.59704776227374 27.04441793181725 27.24496740084051 23.1135669050685 56-57 22.80388451566347 27.212347139923498 27.03187589471881 22.95189244969422 58-59 22.571210767810676 27.36254599361464 27.304571662052844 22.761671576521834 60-61 22.837733383619376 27.42434978484432 27.004648454586178 22.733268376950125 62-63 22.673701116499075 27.588212520923495 26.994926619626607 22.74315974295082 64-65 22.59943413570397 27.534119653902223 26.973680545330826 22.892765665062985 66-67 22.735834627198614 27.48621496730413 26.793779928463906 22.98417047703335 68-69 22.76822730367483 27.30625181879977 26.94264264564757 22.98287823187783 70-71 22.7327239488117 27.125320797423175 26.995163227996866 23.14679202576826 72-73 22.776996903523425 27.086366798224553 26.896324075206145 23.240312223045876 74-75 22.668196453836988 27.18422376840316 26.911439790177656 23.2361399875822 76-77 22.96705887392664 27.094786149104422 26.796030028895007 23.14212494807393 78-79 22.9195950131494 27.072995572033086 26.716847973530594 23.29056144128692 80-81 22.94312789865115 27.094597145108253 26.692916038354568 23.26935891788603 82-83 22.966831655055877 27.077294924140272 26.795621597788006 23.160251823015845 84-85 23.032972493482948 27.076591606542866 26.73718863247714 23.153247267497047 86-87 22.888055476306494 27.065149881715516 26.88405438056549 23.162740261412495 88-89 22.957661635931608 27.054207898384586 26.8319289991583 23.156201466525506 90-91 23.06535912680191 26.97729154199653 26.88580504036126 23.071544290840304 92-93 23.10701882297847 26.8936140165291 26.961302863332314 23.038064297160116 94-95 23.07560617881794 26.91626728545585 26.98148347806893 23.02664305765728 96-97 23.001017705717164 26.90891907285429 27.054661687974104 23.035401533454447 98-99 23.259004781646837 27.53092320332596 27.057158752416953 22.15291326261025 100-101 27.660023909421582 34.469728265926825 27.632475324516758 10.237772500134838 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1907.0 1 1756.0 2 2508.5 3 3703.0 4 4958.5 5 7743.5 6 10209.5 7 12070.5 8 13603.5 9 13767.0 10 12779.0 11 11693.5 12 12367.5 13 15674.5 14 23364.5 15 33459.5 16 41476.0 17 46408.0 18 48082.0 19 46672.5 20 43876.0 21 41529.0 22 41303.0 23 44931.5 24 52637.0 25 64394.5 26 80195.5 27 97558.5 28 115666.5 29 135430.0 30 154296.0 31 172512.5 32 191449.5 33 210099.5 34 227787.5 35 244448.5 36 264102.5 37 282121.5 38 296880.0 39 311515.5 40 325927.0 41 339263.5 42 348607.0 43 358230.5 44 371774.0 45 387253.0 46 404667.5 47 420101.5 48 425095.5 49 424436.0 50 424033.5 51 419239.5 52 407877.5 53 393054.5 54 377658.5 55 358475.0 56 336548.0 57 311281.0 58 281527.0 59 249238.0 60 214627.0 61 180395.0 62 146962.5 63 116481.5 64 90416.0 65 69894.0 66 54358.5 67 42456.5 68 32812.0 69 23900.0 70 16896.5 71 12196.5 72 8656.5 73 6045.0 74 4214.0 75 2934.0 76 2005.0 77 1350.5 78 931.5 79 637.0 80 433.0 81 289.0 82 202.5 83 144.0 84 93.5 85 63.0 86 47.0 87 38.0 88 32.5 89 25.0 90 18.0 91 12.0 92 7.0 93 3.0 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001839649481148918 3 0.0023775586861632214 4 7.53072887020025E-4 5 2.1516368200572142E-5 6 4.0881099581087073E-4 7 0.0 8 5.3790920501430354E-5 9 3.657782594097264E-4 10-11 5.432882970644466E-4 12-13 1.4523548535386196E-4 14-15 6.454910460171643E-5 16-17 4.3032736401144283E-4 18-19 0.0 20-21 5.9173045924469906E-5 22-23 1.6139680108312318E-5 24-25 0.0 26-27 7.53826287624143E-5 28-29 2.3167518019075918E-4 30-31 5.993182026544289E-4 32-33 3.469871888534703E-4 34-35 0.0010247734623792036 36-37 1.2633970902097382E-4 38-39 1.221719484654287E-4 40-41 3.1453955733724744E-4 42-43 0.0014093606895547223 44-45 4.4921019345467347E-4 46-47 1.227760650516703E-4 48-49 4.093723971109225E-4 50-51 0.0 52-53 5.789005849150573E-4 54-55 7.588100624383467E-4 56-57 8.19236933952618E-4 58-59 7.739154954058283E-4 60-61 7.081886697023496E-4 62-63 1.1759347309186951E-4 64-65 7.494395949365208E-4 66-67 0.002662596332061219 68-69 0.00146666959086772 70-71 2.716106490596108E-4 72-73 0.0 74-75 9.32912871894055E-5 76-77 2.185593456741168E-5 78-79 0.0011245315900528965 80-81 1.7294688177148137E-4 82-83 9.935826787661598E-5 84-85 8.462874843242713E-4 86-87 2.68253845773921E-4 88-89 8.025377527803317E-6 90-91 4.085311434320979E-5 92-93 1.41556005259555E-4 94-95 7.391566986713022E-4 96-97 2.6054927086589296E-5 98-99 9.072644208545614E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 347.0 20-21 744.0 22-23 1653.0 24-25 5191.0 26-27 5478.0 28-29 13179.0 30-31 36033.0 32-33 45937.0 34-35 62206.0 36-37 93331.0 38-39 103804.0 40-41 102765.0 42-43 111462.0 44-45 128332.0 46-47 126943.0 48-49 119625.0 50-51 109104.0 52-53 98058.0 54-55 107584.0 56-57 112371.0 58-59 115312.0 60-61 115425.0 62-63 112858.0 64-65 117238.0 66-67 124932.0 68-69 117591.0 70-71 110993.0 72-73 103487.0 74-75 104956.0 76-77 103031.0 78-79 108277.0 80-81 108915.0 82-83 102686.0 84-85 102078.0 86-87 105995.0 88-89 109545.0 90-91 114464.0 92-93 116997.0 94-95 124072.0 96-97 174477.0 98-99 702679.0 100-101 4915094.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.27450429196708 #Duplication Level Percentage of deduplicated Percentage of total 1 90.21262359397556 76.9283675785408 2 6.802586417618659 11.601743693313985 3 1.6334911463409496 4.178854433086245 4 0.6033730787943808 2.0580936078923524 5 0.28661627217930324 1.22205302660508 6 0.14931845956755269 0.7639834572757909 7 0.08633248797332856 0.5153372081352462 8 0.05670303164818244 0.3868258332520383 9 0.0393237409489769 0.30179812646967585 >10 0.12530489712202073 1.715294270542363 >50 0.0033490213703379497 0.18618024984272416 >100 9.353937294257206E-4 0.11873097203612208 >500 4.245873124288301E-5 0.022737543007609946 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0758184100286071E-5 2 0.0 4.3032736401144284E-5 0.0 0.0 1.0758184100286071E-5 3 0.0 4.3032736401144284E-5 0.0 0.0 1.0758184100286071E-5 4 0.0 1.0758184100286071E-4 0.0 1.0758184100286071E-5 2.1516368200572142E-5 5 0.0 1.1834002510314678E-4 0.0 1.0758184100286071E-5 2.1516368200572142E-5 6 5.3790920501430354E-5 1.1834002510314678E-4 0.0 1.0758184100286071E-5 4.3032736401144284E-5 7 5.3790920501430354E-5 1.1834002510314678E-4 0.0 1.0758184100286071E-5 4.3032736401144284E-5 8 5.3790920501430354E-5 1.5061457740400498E-4 0.0 1.0758184100286071E-5 4.3032736401144284E-5 9 5.3790920501430354E-5 3.550200753094403E-4 0.0 2.1516368200572142E-5 4.3032736401144284E-5 10-11 5.3790920501430354E-5 3.550200753094403E-4 0.0 4.3032736401144284E-5 4.3032736401144284E-5 12-13 5.3790920501430354E-5 3.550200753094403E-4 0.0 7.530728870200249E-5 4.3032736401144284E-5 14-15 5.3790920501430354E-5 4.7873919246273016E-4 0.0 1.0758184100286071E-4 5.3790920501430354E-5 16-17 1.2909820920343286E-4 4.841182845128732E-4 0.0 1.8826822175500624E-4 6.454910460171643E-5 18-19 1.2909820920343286E-4 5.002555606633023E-4 0.0 3.3350370710886817E-4 7.530728870200249E-5 20-21 1.2909820920343286E-4 5.325301129641605E-4 0.0 0.001237191171532898 8.068638075214553E-5 22-23 1.2909820920343286E-4 5.540464811647326E-4 0.0 0.0026626505648208025 9.14445648524316E-5 24-25 1.2909820920343286E-4 5.863210334655909E-4 0.0 0.005518948443446754 1.0220274895271767E-4 26-27 1.2909820920343286E-4 6.13216493716306E-4 0.0 0.012732310882688565 1.0758184100286071E-4 28-29 1.2909820920343286E-4 6.13216493716306E-4 0.0 0.05678169568130988 1.0758184100286071E-4 30-31 1.2909820920343286E-4 6.777655983180225E-4 0.0 0.08268202390274859 1.0758184100286071E-4 32-33 1.2909820920343286E-4 6.885237824183085E-4 0.0 0.09285926606161922 1.0758184100286071E-4 34-35 1.2909820920343286E-4 7.853474393208831E-4 0.0 0.10631237527902695 1.1834002510314678E-4 36-37 1.2909820920343286E-4 9.19824740574459E-4 0.0 0.12610205493150317 1.1834002510314678E-4 38-39 1.2909820920343286E-4 9.897529372263185E-4 0.0 0.15962993568004472 1.2909820920343286E-4 40-41 1.2909820920343286E-4 0.0011134720543796084 0.0 0.23027893066662336 1.5061457740400498E-4 42-43 1.2909820920343286E-4 0.0011780211589813246 0.0 0.2589548703859359 1.5061457740400498E-4 44-45 1.2909820920343286E-4 0.0013178775522850435 0.0 0.29604908916372225 1.5061457740400498E-4 46-47 1.2909820920343286E-4 0.0014308384853380473 0.0 0.336091050384987 1.6137276150429106E-4 48-49 1.2909820920343286E-4 0.0014415966694383336 0.0 0.36919936195361736 1.828891297048632E-4 50-51 1.7213094560457714E-4 0.0015653157865916233 0.0 0.40037120038419627 1.828891297048632E-4 52-53 1.828891297048632E-4 0.0015706948786417664 0.0 0.4440117741870067 2.0440549790543537E-4 54-55 1.828891297048632E-4 0.0015814530627420525 0.0 0.5301686915541477 2.259218661060075E-4 56-57 1.828891297048632E-4 0.0015922112468423385 0.0 0.6230925067203686 2.3130095815615054E-4 58-59 1.828891297048632E-4 0.0016083485229927675 0.0 0.7105726807318449 2.3668005020629357E-4 60-61 2.0440549790543534E-4 0.0016513812593939117 0.0 0.7623840953588226 2.3668005020629357E-4 62-63 2.259218661060075E-4 0.0016728976275944842 0.0 0.8057395772829754 2.474382343065796E-4 64-65 2.259218661060075E-4 0.001839649481148918 0.0 0.8238187056635062 2.474382343065796E-4 66-67 2.3130095815615054E-4 0.0018611658493494902 0.0 0.8334257640650616 2.474382343065796E-4 68-69 2.474382343065796E-4 0.0018826822175500625 0.0 0.8427692469561601 2.474382343065796E-4 70-71 2.474382343065796E-4 0.0019095776778007777 0.0 0.8505743095209176 2.474382343065796E-4 72-73 2.6895460250715177E-4 0.0019310940460013498 0.0 0.8570238408890392 2.6895460250715177E-4 74-75 2.6895460250715177E-4 0.001957989506252065 0.0 0.8623706583868813 2.6895460250715177E-4 76-77 2.743336945572948E-4 0.0020064013347033524 0.0 0.8668137884202994 2.743336945572948E-4 78-79 2.797127866074378E-4 0.0020117804267534953 0.0 0.8707190092487033 2.8509187865758084E-4 80-81 2.904709707077239E-4 0.002017159518803638 0.0 0.8727038942152061 2.9585006275786695E-4 82-83 2.904709707077239E-4 0.002022538610853781 0.0 0.873338627077123 3.0122915480800997E-4 84-85 2.904709707077239E-4 0.0020386758870042107 0.0 0.8739034317423879 3.0122915480800997E-4 86-87 2.904709707077239E-4 0.0020548131631546395 0.0 0.8742369354494968 3.0122915480800997E-4 88-89 3.0122915480800997E-4 0.0020978458995557837 0.0 0.8743391381984496 3.119873389082961E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10500 0.0 48.975307 1 GTATCAA 18790 0.0 34.66014 1 TCAACGC 22660 0.0 28.028988 4 ATCAACG 23065 0.0 27.53638 3 CAACGCA 23380 0.0 27.113962 5 TATCAAC 24015 0.0 26.632387 2 AACGCAG 24140 0.0 26.343805 6 GTACATG 31125 0.0 22.594452 1 TACATGG 30770 0.0 22.593182 2 ACGCAGA 28605 0.0 22.259817 7 CGCAGAG 29085 0.0 21.864744 8 ACATGGG 31300 0.0 21.540497 3 CATGGGG 23620 0.0 19.280115 4 GTGGTAT 5135 0.0 19.149841 1 ACCGAAC 1580 0.0 18.61968 8 GCAGAGT 34390 0.0 18.421675 9 CTTATAC 15145 0.0 18.174698 1 GAGTACT 18020 0.0 17.74554 12-13 TATACAC 17025 0.0 17.516554 3 GGACCGA 2105 0.0 17.230553 6 >>END_MODULE