##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139773_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8392702 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.49304753105734 34.0 31.0 34.0 31.0 34.0 2 32.691159414453175 34.0 31.0 34.0 31.0 34.0 3 32.78495685894721 34.0 31.0 34.0 31.0 34.0 4 36.20549389219348 37.0 37.0 37.0 35.0 37.0 5 36.0410774742151 37.0 35.0 37.0 35.0 37.0 6 36.06469692358909 37.0 35.0 37.0 35.0 37.0 7 36.086401137559754 37.0 35.0 37.0 35.0 37.0 8 36.08758395091354 37.0 35.0 37.0 35.0 37.0 9 37.97259106781106 39.0 38.0 39.0 35.0 39.0 10-11 37.853946381034376 39.0 38.0 39.0 35.0 39.0 12-13 37.88314079303662 39.0 38.0 39.0 35.0 39.0 14-15 39.19686180922425 40.0 39.0 41.0 36.0 41.0 16-17 39.16437834918957 40.0 39.0 41.0 36.0 41.0 18-19 39.2025590209208 40.0 39.0 41.0 36.0 41.0 20-21 39.24683248068377 40.0 39.0 41.0 36.0 41.0 22-23 39.2101212679789 40.0 39.0 41.0 36.0 41.0 24-25 39.1971560034223 40.0 39.0 41.0 36.0 41.0 26-27 39.09218241432505 40.0 39.0 41.0 36.0 41.0 28-29 39.016028416848854 40.0 39.0 41.0 35.5 41.0 30-31 38.9010165370069 40.0 38.0 41.0 35.0 41.0 32-33 38.825170807640276 40.0 38.0 41.0 35.0 41.0 34-35 38.76404418981075 40.0 38.0 41.0 35.0 41.0 36-37 38.693875704784226 40.0 38.0 41.0 35.0 41.0 38-39 38.59800695786283 40.0 38.0 41.0 35.0 41.0 40-41 38.58738530200584 40.0 38.0 41.0 35.0 41.0 42-43 38.5277976429971 40.0 38.0 41.0 34.5 41.0 44-45 38.49164014962662 40.0 38.0 41.0 34.0 41.0 46-47 38.37994310299666 40.0 38.0 41.0 34.0 41.0 48-49 38.35477772372256 40.0 38.0 41.0 34.0 41.0 50-51 38.25446930275666 40.0 37.5 41.0 34.0 41.0 52-53 38.077725532256935 40.0 37.0 41.0 33.0 41.0 54-55 37.93971111521208 40.0 37.0 41.0 33.0 41.0 56-57 37.7368189125566 39.0 36.0 41.0 33.0 41.0 58-59 37.519641391082956 39.0 36.0 41.0 33.0 41.0 60-61 37.35258724346295 39.0 35.5 41.0 32.5 41.0 62-63 37.17233919952525 39.0 35.0 40.0 32.0 41.0 64-65 36.910448662804896 38.0 35.0 40.0 32.0 41.0 66-67 36.69498579037263 37.5 35.0 40.0 32.0 41.0 68-69 36.405263742516965 37.0 35.0 40.0 32.0 41.0 70-71 36.05885598329016 36.5 35.0 39.0 31.0 41.0 72-73 35.81063058622583 36.0 35.0 39.0 31.0 41.0 74-75 35.46111563982095 35.5 34.0 38.5 31.0 40.0 76-77 33.47006329610926 34.5 32.0 36.5 28.0 39.0 78-79 34.572658474598065 35.0 34.0 37.0 30.5 39.0 80-81 34.528480020585775 35.0 34.0 36.5 31.0 39.0 82-83 34.28499890791272 35.0 34.0 36.0 30.5 37.5 84-85 34.04423388396044 35.0 34.0 36.0 30.0 37.0 86-87 33.85049587135335 35.0 34.0 35.0 30.0 37.0 88-89 33.66200052254662 35.0 33.5 35.0 30.0 36.0 90-91 33.64907353669244 35.0 34.0 35.0 30.0 36.0 92-93 33.598607039268394 35.0 34.0 35.0 30.0 36.0 94-95 33.52353188656062 35.0 33.0 35.0 30.0 36.0 96-97 33.50988511778412 35.0 33.0 35.0 30.0 35.0 98-99 33.58702204258702 35.0 33.0 35.0 30.0 35.0 100-101 32.25528565253667 34.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 7.0 19 10.0 20 55.0 21 165.0 22 636.0 23 2226.0 24 5602.0 25 12127.0 26 22434.0 27 37486.0 28 55440.0 29 78353.0 30 104437.0 31 137345.0 32 182460.0 33 252816.0 34 378955.0 35 599904.0 36 1108544.0 37 2099500.0 38 2363662.0 39 931450.0 40 19087.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.78106145076996 19.507769964905226 13.048157792329572 24.663010791995234 2 15.424209122689453 21.03224444259889 39.8467592734363 23.696787161275356 3 18.561140809599433 25.749014357588017 30.403791672942116 25.286053159870438 4 12.956504280821408 17.4391209466838 37.35465433208641 32.24972044040838 5 13.273188214378184 37.809174900904964 35.412616272163156 13.505020612553695 6 31.013767620599086 36.84668382371603 18.17146714934223 13.968081406342659 7 27.08002738569772 32.30330351298068 22.512618701343143 18.10405039997846 8 25.50791759505284 35.667520583364116 21.027821797514505 17.796740024068537 9 26.216815806854154 15.811608305969155 20.402213218855564 37.569362668321126 10-11 24.873556208983512 26.076297365484276 28.50385253212866 20.546293893403547 12-13 25.531508511720162 23.661137352524232 28.581471321628904 22.22588281412669 14-15 22.592677123731168 24.971828194253828 25.942058332959494 26.49343634905551 16-17 22.42251079022125 28.24535485942284 26.58760440734672 22.744529943009187 18-19 22.56085703984247 27.301177856666424 28.218659497263214 21.919305606227887 20-21 23.10687913303313 26.44177223078365 28.147569442582615 22.303779193600604 22-23 22.75161146934782 26.643275683109273 28.028471973124898 22.576640874418004 24-25 22.708100491979092 26.776856568255553 28.087934564593347 22.42710837517201 26-27 22.602983085844105 26.90074040431099 28.116119603002648 22.38015690684226 28-29 22.49545459156365 26.79791415428551 28.15968092933389 22.546950324816944 30-31 22.59906517986296 26.550062449677377 28.273909091539533 22.576963278920132 32-33 22.2243280537557 27.00440364770818 28.084221262299014 22.6870470362371 34-35 22.63734287261963 26.859392026609513 28.11655572840278 22.386709372368074 36-37 22.49767046504047 26.915740617356498 28.19721543204348 22.389373485559553 38-39 22.374538154947196 26.862430273455146 28.16936794025911 22.59366363133855 40-41 22.48629389546213 26.58332283647405 28.26337289601651 22.66701037204731 42-43 22.751306379332426 26.632238723043972 28.060114710972815 22.55634018665079 44-45 22.33793921346708 26.89520347308429 27.93139738989629 22.83545992355234 46-47 22.699872854495396 26.667708609281664 27.54070037816901 23.09171815805393 48-49 22.500999978212853 27.046406035957066 27.49034011672091 22.962253869109173 50-51 22.356790310259957 27.176084134956458 27.649139074303957 22.81798648047963 52-53 22.50985479291941 26.998655427620445 27.412217598688436 23.07927218077171 54-55 22.319978523288132 26.760230471004753 27.441402741086446 23.47838826462067 56-57 22.633687895119873 26.487158888120803 27.572200062064507 23.30695315469482 58-59 22.150181206549536 26.4012933076872 28.08404664997421 23.364478835789058 60-61 22.452475814883893 26.291895373434127 28.03829834478229 23.217330466899693 62-63 22.010001004138648 27.05980885590665 28.066413811635787 22.86377632831892 64-65 21.461917316097146 27.27263108455463 27.852515224526552 23.412936374821676 66-67 21.633893355787517 27.908708205371525 27.217088483510565 23.240309955330392 68-69 21.832683636853893 28.155781571694288 26.723888390235945 23.287646401215873 70-71 21.79834388265531 27.723542003045893 26.686417518651762 23.791696595647036 72-73 21.689676822906215 27.154609266122886 26.594535970853812 24.56117794011709 74-75 22.261650154179865 26.69916752026868 26.70161833492833 24.337563990623124 76-77 22.80213558427476 26.469460315616576 26.618621309350623 24.109782790758036 78-79 23.075981958455387 26.24853026136074 25.691820739397315 24.983667040786557 80-81 22.915216287119765 26.83132964634592 25.61063065108825 24.642823415446063 82-83 22.847394737366745 27.032553615915255 25.69471911135747 24.42533253536053 84-85 22.851438375595514 27.010842491807 25.64901365596096 24.488705476636525 86-87 23.325810205167222 27.401048569692122 25.581879394444123 23.691261830696536 88-89 23.48581085980641 27.00588699978671 26.05330338180183 23.45499875860505 90-91 23.22734361001659 26.97513836489905 26.36363681694745 23.43388120813691 92-93 22.900160053617917 26.251212370420046 26.228654477961566 24.619973098000468 94-95 22.820330620502 26.20376360968457 27.13190385471146 23.844001915101973 96-97 22.216016633713526 26.530676325103258 27.48707087622519 23.76623616495803 98-99 22.52085128705743 26.502155182119115 27.959661365154233 23.017332165669224 100-101 27.18051134390378 33.80698340581427 28.762344111471695 10.250161138810256 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2189.0 1 1920.5 2 2514.0 3 3655.5 4 4871.5 5 7428.0 6 9771.5 7 11931.5 8 13823.0 9 14179.0 10 13086.5 11 11787.0 12 12421.0 13 15570.0 14 22717.0 15 32166.0 16 39852.5 17 44407.0 18 45226.5 19 42872.5 20 39357.0 21 36156.5 22 34600.0 23 36575.0 24 42388.5 25 51401.0 26 63038.0 27 76198.0 28 91671.0 29 108773.5 30 124608.0 31 140525.0 32 157006.5 33 172806.5 34 187609.0 35 200746.0 36 215639.5 37 230973.5 38 245740.0 39 259045.0 40 271888.0 41 286248.0 42 296826.5 43 307028.5 44 319570.0 45 332353.5 46 344191.5 47 354855.5 48 373419.0 49 382858.0 50 378161.0 51 375500.5 52 368744.5 53 358184.5 54 344347.0 55 325666.5 56 303640.0 57 277187.0 58 248442.5 59 217547.5 60 185396.0 61 154792.0 62 124767.5 63 97534.0 64 74079.0 65 56639.5 66 44248.5 67 34312.0 68 26719.5 69 19765.5 70 14039.5 71 10202.0 72 7294.0 73 5189.5 74 3679.5 75 2578.5 76 1796.0 77 1219.0 78 833.0 79 580.0 80 411.5 81 291.5 82 207.5 83 152.5 84 115.0 85 84.5 86 64.0 87 47.0 88 28.0 89 16.0 90 9.5 91 4.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0018468426497211506 3 0.002454513457048755 4 4.408592131592424E-4 5 1.1915113869168713E-5 6 4.6468944089757985E-4 7 0.0 8 2.3830227738337425E-5 9 4.6468944089757985E-4 10-11 4.7660455476674854E-4 12-13 1.1319358175710278E-4 14-15 2.9787784672921784E-5 16-17 3.991563146171519E-4 18-19 0.0 20-21 8.936762929306452E-5 22-23 1.7875419409475985E-5 24-25 0.0 26-27 1.1330637238020014E-4 28-29 2.1481372129805251E-4 30-31 6.994601901037144E-4 32-33 2.8797613253813526E-4 34-35 9.764376552694091E-4 36-37 1.7597393838108709E-4 38-39 1.5311872213239256E-4 40-41 3.266135371204604E-4 42-43 0.001357242635822477 44-45 4.219782124461277E-4 46-47 2.1698227057012666E-4 48-49 3.167853706705622E-4 50-51 0.0 52-53 4.953211305579324E-4 54-55 6.749475674922754E-4 56-57 7.162768407336558E-4 58-59 7.579163867971763E-4 60-61 7.753561341063991E-4 62-63 4.065337012372989E-5 64-65 7.763699373895434E-4 66-67 0.0025456291825907977 68-69 0.001607339209963747 70-71 3.089279087987338E-4 72-73 0.0 74-75 1.5502116887880645E-4 76-77 0.0 78-79 9.638781721742944E-4 80-81 1.540564527546603E-4 82-83 1.2509028978025625E-4 84-85 8.565486435164304E-4 86-87 3.2194731766775245E-4 88-89 2.452541282401136E-5 90-91 3.324280210227481E-5 92-93 1.691627618967307E-4 94-95 7.238453976530864E-4 96-97 1.7590641497273188E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 273.0 20-21 722.0 22-23 1482.0 24-25 4705.0 26-27 4768.0 28-29 10801.0 30-31 27890.0 32-33 35730.0 34-35 48839.0 36-37 72113.0 38-39 52148.0 40-41 81557.0 42-43 87886.0 44-45 102525.0 46-47 102912.0 48-49 96182.0 50-51 87909.0 52-53 13888.0 54-55 16863.0 56-57 18156.0 58-59 19098.0 60-61 102488.0 62-63 101084.0 64-65 104221.0 66-67 111207.0 68-69 102856.0 70-71 97958.0 72-73 90346.0 74-75 93060.0 76-77 91073.0 78-79 96344.0 80-81 96911.0 82-83 91784.0 84-85 91418.0 86-87 94892.0 88-89 98711.0 90-91 104704.0 92-93 106080.0 94-95 113770.0 96-97 161918.0 98-99 766845.0 100-101 4788585.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.07740081985112 #Duplication Level Percentage of deduplicated Percentage of total 1 89.11716585919194 74.92739673872433 2 7.533263430199398 12.66754417804803 3 1.8668492898317517 4.708795080343158 4 0.694945474648515 2.3371683687985954 5 0.31252408850322777 1.3138106527472257 6 0.1564971447474769 0.7894723899657525 7 0.08578696416423913 0.5048921479808457 8 0.05874973969169808 0.3951620329696653 9 0.04097023703769582 0.3100203936992395 >10 0.12889321897047967 1.7213033881118267 >50 0.00364971060973795 0.21184925724448736 >100 6.577179740120618E-4 0.08815902872750685 >500 4.7124429790363866E-5 0.024426342639354465 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.766045547667485E-5 0.0 0.0 0.0 3 0.0 4.766045547667485E-5 0.0 0.0 0.0 4 0.0 5.957556934584357E-5 0.0 0.0 0.0 5 0.0 5.957556934584357E-5 0.0 1.1915113869168713E-5 0.0 6 0.0 5.957556934584357E-5 0.0 1.1915113869168713E-5 0.0 7 0.0 5.957556934584357E-5 0.0 1.1915113869168713E-5 0.0 8 0.0 5.957556934584357E-5 0.0 1.1915113869168713E-5 1.1915113869168713E-5 9 0.0 1.5489648029919328E-4 0.0 4.766045547667485E-5 1.1915113869168713E-5 10-11 0.0 1.5489648029919328E-4 0.0 6.553312628042793E-5 1.1915113869168713E-5 12-13 0.0 1.5489648029919328E-4 0.0 8.936335401876536E-5 1.1915113869168713E-5 14-15 0.0 1.906418219066994E-4 0.0 1.4298136643002457E-4 1.7872670803753067E-5 16-17 0.0 1.906418219066994E-4 0.0 2.2638716351420555E-4 2.3830227738337425E-5 18-19 0.0 2.0255693577586812E-4 0.0 5.123498963742547E-4 2.3830227738337425E-5 20-21 0.0 2.1447204964503684E-4 0.0 0.001471516562842336 2.3830227738337425E-5 22-23 0.0 2.1447204964503684E-4 0.0 0.0032468685293484748 3.5745341607506135E-5 24-25 0.0 2.1447204964503684E-4 0.0 0.005802660454285164 4.766045547667485E-5 26-27 0.0 2.1447204964503684E-4 0.0 0.011277655277168187 4.766045547667485E-5 28-29 0.0 2.1447204964503684E-4 0.0 0.0504605072359295 4.766045547667485E-5 30-31 0.0 2.8596273286004913E-4 0.0 0.07567884574002509 4.766045547667485E-5 32-33 0.0 2.8596273286004913E-4 0.0 0.0901795393188034 4.766045547667485E-5 34-35 0.0 3.872412007479832E-4 0.0 0.10908882502917416 4.766045547667485E-5 36-37 0.0 4.885196686359172E-4 0.0 0.13429524841940055 4.766045547667485E-5 38-39 0.0 5.004347825050859E-4 0.0 0.1950265838105535 4.766045547667485E-5 40-41 0.0 5.361801241125921E-4 0.0 0.6398356572174253 4.766045547667485E-5 42-43 0.0 5.480952379817608E-4 0.0 0.6930306830863291 4.766045547667485E-5 44-45 0.0 6.612888197388636E-4 0.0 0.7772943683690903 4.766045547667485E-5 46-47 0.0 7.625672876267976E-4 0.0 0.8756298031313396 4.766045547667485E-5 48-49 0.0 7.68524844561382E-4 0.0 0.9548355225766386 4.766045547667485E-5 50-51 0.0 8.817184263184847E-4 0.0 1.0301271271159158 4.766045547667485E-5 52-53 0.0 8.936335401876535E-4 0.0 1.305509238860143 4.766045547667485E-5 54-55 0.0 8.936335401876535E-4 0.0 2.2317663608215805 4.766045547667485E-5 56-57 0.0 8.936335401876535E-4 0.0 3.2366036587501856 4.766045547667485E-5 58-59 0.0 8.936335401876535E-4 0.0 4.261077064335181 4.766045547667485E-5 60-61 0.0 8.995910971222379E-4 0.0 5.037156091089615 4.766045547667485E-5 62-63 0.0 9.174637679259909E-4 0.0 5.058174351954829 4.766045547667485E-5 64-65 0.0 9.770393372718345E-4 0.0 5.069553285699886 4.766045547667485E-5 66-67 0.0 0.0010008695650101718 0.0 5.078048761888603 4.766045547667485E-5 68-69 0.0 0.0010187422358139248 0.0 5.0859723126116005 4.766045547667485E-5 70-71 0.0 0.0010425724635522624 0.0 5.0930022297944095 4.766045547667485E-5 72-73 0.0 0.0010485300204868468 0.0 5.098697654223872 4.766045547667485E-5 74-75 0.0 0.0010664026912906 0.0 5.103153906810942 4.766045547667485E-5 76-77 0.0 0.0010723602482251842 0.0 5.107735268093636 4.766045547667485E-5 78-79 0.0 0.0010723602482251842 0.0 5.111476613848556 4.766045547667485E-5 80-81 0.0 0.0010723602482251842 0.0 5.113079196663959 4.766045547667485E-5 82-83 0.0 0.0010723602482251842 0.0 5.113788145939175 4.766045547667485E-5 84-85 0.0 0.0010723602482251842 0.0 5.114425604531174 5.361801241125921E-5 86-87 0.0 0.001084275362094353 0.0 5.1147949730611195 5.957556934584357E-5 88-89 0.0 0.0010961904759635216 0.0 5.1148843364151375 5.957556934584357E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10260 0.0 49.959435 1 GTATCAA 18275 0.0 35.9284 1 TCAACGC 22305 0.0 28.744205 4 ATCAACG 22920 0.0 27.973095 3 CAACGCA 23195 0.0 27.712936 5 TATCAAC 23825 0.0 27.313648 2 AACGCAG 23900 0.0 26.895462 6 TATCTCG 22725 0.0 26.645681 94-95 GTACATG 27925 0.0 23.467833 1 TACATGG 27925 0.0 23.138985 2 ACGCAGA 28420 0.0 22.661583 7 ACATGGG 28245 0.0 22.43335 3 CGCAGAG 28755 0.0 22.368544 8 CTATCTC 25255 0.0 21.575865 94-95 CATGGGG 21560 0.0 20.289618 4 GTGGTAT 5035 0.0 19.564964 1 GGACCGA 1680 0.0 19.379454 6 ACCGAAC 1450 0.0 19.28658 8 GCAGAGT 33510 0.0 19.119757 9 GAGTACT 18615 0.0 19.103916 12-13 >>END_MODULE