##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139772_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9486639 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.47688090587193 34.0 31.0 34.0 31.0 34.0 2 32.67041109079833 34.0 31.0 34.0 31.0 34.0 3 32.76670177920758 34.0 31.0 34.0 31.0 34.0 4 36.18761017468884 37.0 37.0 37.0 35.0 37.0 5 36.027818703757994 37.0 35.0 37.0 35.0 37.0 6 36.051164590536224 37.0 35.0 37.0 35.0 37.0 7 36.07154051081737 37.0 35.0 37.0 35.0 37.0 8 36.065657183750744 37.0 35.0 37.0 35.0 37.0 9 37.942500394502204 39.0 38.0 39.0 35.0 39.0 10-11 37.8213279223548 39.0 38.0 39.0 35.0 39.0 12-13 37.85306139508418 39.0 38.0 39.0 35.0 39.0 14-15 39.173067616465644 40.0 39.0 41.0 36.0 41.0 16-17 39.13810670986848 40.0 39.0 41.0 36.0 41.0 18-19 39.168812526754735 40.0 39.0 41.0 36.0 41.0 20-21 39.211075032533 40.0 39.0 41.0 36.0 41.0 22-23 39.170117215042566 40.0 39.0 41.0 36.0 41.0 24-25 39.15928857857638 40.0 39.0 41.0 36.0 41.0 26-27 39.0562943037399 40.0 39.0 41.0 36.0 41.0 28-29 38.973768230567835 40.0 38.5 41.0 35.5 41.0 30-31 38.864795652843256 40.0 38.0 41.0 35.0 41.0 32-33 38.80522556614605 40.0 38.0 41.0 35.0 41.0 34-35 38.74130105091949 40.0 38.0 41.0 35.0 41.0 36-37 38.67798894364768 40.0 38.0 41.0 35.0 41.0 38-39 38.58111332122975 40.0 38.0 41.0 35.0 41.0 40-41 38.579761150930665 40.0 38.0 41.0 35.0 41.0 42-43 38.534414613967364 40.0 38.0 41.0 34.5 41.0 44-45 38.50625671710078 40.0 38.0 41.0 34.0 41.0 46-47 38.40677870786993 40.0 38.0 41.0 34.0 41.0 48-49 38.39935144501083 40.0 38.0 41.0 34.0 41.0 50-51 38.312937237509374 40.0 38.0 41.0 34.0 41.0 52-53 38.14892157923089 40.0 37.0 41.0 33.5 41.0 54-55 38.01152375725744 40.0 37.0 41.0 33.0 41.0 56-57 37.80927538852235 39.5 37.0 41.0 33.0 41.0 58-59 37.596835767740075 39.0 36.0 41.0 33.0 41.0 60-61 37.43610165709174 39.0 36.0 41.0 32.5 41.0 62-63 37.272112004963525 39.0 35.0 40.5 32.0 41.0 64-65 37.01378513541215 38.5 35.0 40.0 32.0 41.0 66-67 36.81938032923944 38.0 35.0 40.0 32.0 41.0 68-69 36.545861536492566 37.0 35.0 40.0 32.0 41.0 70-71 36.21278585537913 37.0 35.0 39.5 31.0 41.0 72-73 35.954755372653416 36.5 35.0 39.0 31.0 41.0 74-75 35.599696399639576 36.0 34.5 39.0 31.0 40.0 76-77 33.58849138937251 34.5 32.0 36.5 28.0 39.0 78-79 34.72825626946535 35.0 34.0 37.0 30.5 39.0 80-81 34.70204559444631 35.0 34.0 37.0 31.0 39.0 82-83 34.45763637751694 35.0 34.0 36.0 31.0 38.5 84-85 34.18748511077152 35.0 34.0 36.0 30.5 37.0 86-87 33.97678099860107 35.0 34.0 35.5 30.0 37.0 88-89 33.77267755808791 35.0 34.0 35.0 30.0 36.5 90-91 33.724630599473656 35.0 34.0 35.0 30.0 36.0 92-93 33.64779963316042 35.0 34.0 35.0 30.0 36.0 94-95 33.569595900175344 35.0 34.0 35.0 30.0 36.0 96-97 33.574786378195434 35.0 34.0 35.0 30.0 35.5 98-99 33.63781465766335 35.0 34.0 35.0 30.5 35.0 100-101 32.411604403967914 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 5.0 19 15.0 20 44.0 21 196.0 22 743.0 23 2458.0 24 6349.0 25 13511.0 26 25084.0 27 41535.0 28 62164.0 29 86495.0 30 116016.0 31 152725.0 32 202458.0 33 276221.0 34 410557.0 35 642288.0 36 1165956.0 37 2221433.0 38 2748008.0 39 1287062.0 40 25315.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.080625182427625 19.914766441518434 13.108119746097643 24.896488629956302 2 15.14578927040219 21.24344537545834 40.1264774785715 23.48428787556797 3 18.447694251681057 25.566969621806614 30.52754335845374 25.457792768058585 4 12.661338438088332 17.73550636794293 38.023175896898564 31.579979297070178 5 13.152366460815662 37.631372978932994 35.89835595023947 13.317904610011874 6 30.65411381056618 37.5567616068381 18.35422489349721 13.434899689098504 7 26.788064771938725 32.222571133991714 22.85179187275915 18.137572221310414 8 24.839835233497393 36.408139154054275 21.303914126786974 17.448111485661357 9 25.537257703021588 16.156132617348128 20.796708874262883 37.5099008053674 10-11 24.343792515666742 26.420379364463038 29.006733883398294 20.229094236471926 12-13 24.941081513354042 23.91300234482796 28.98286202672637 22.163054115091636 14-15 22.039112598021436 25.49389343630907 26.15481788513769 26.312176080531806 16-17 22.072849508327433 28.714835391991944 26.909462169684012 22.30285292999661 18-19 22.08517157657206 27.871794215000694 28.31989285140923 21.723141357018015 20-21 22.623979928659242 27.144295704401017 28.206590388895403 22.025133978044337 22-23 22.352257816386015 27.393781724630678 28.054357248149685 22.199603210833622 24-25 22.27869952146944 27.486184917571403 28.16070662692639 22.074408934032764 26-27 22.284501001538217 27.64541427061267 28.07304426524085 21.997040462608265 28-29 22.0745099478339 27.469375287277874 28.1507581495833 22.305356615304923 30-31 22.5141621590961 27.473559498582233 28.057485817734158 21.954792524587507 32-33 22.288021954580238 27.613955526341126 28.121053522892215 21.97696899618642 34-35 22.286643508513556 27.659708548773526 28.202004194080267 21.851643748632654 36-37 22.34355812132391 27.477160761456272 28.06789317119611 22.11138794602371 38-39 22.06569694350007 27.41051609831241 28.30224378087284 22.221543177314686 40-41 22.20782734363331 27.272854884051256 28.28279084131135 22.236526931004086 42-43 22.270008405968714 27.316532776793096 28.20900322149356 22.204455595744626 44-45 22.127570460742092 27.536062891615742 28.03277795300917 22.303588694632996 46-47 22.42250466109886 27.352596571941966 27.625510504352434 22.599388262606734 48-49 22.2071945625773 27.4881577842716 27.746382855466255 22.558264797684842 50-51 22.109511162703573 27.65140079541673 27.799912961102123 22.439175080777567 52-53 22.23853169538601 27.65072409583943 27.83792573952193 22.272818469252634 54-55 22.159742175019627 27.543871044407283 27.675405605304725 22.620981175268366 56-57 22.380952409838184 27.721275171779038 27.408571903280727 22.489200515102052 58-59 22.098829148145917 27.814128959790953 27.781686631964735 22.3053552600984 60-61 22.352813346510956 27.95193995877458 27.380378507961368 22.314868186753095 62-63 22.15756639402521 28.17023337834265 27.382803484449624 22.289396743182515 64-65 22.11044116304196 28.085904694326814 27.361890390115494 22.441763752515733 66-67 22.18551193027159 28.02420088279301 27.26447483429915 22.525812352636247 68-69 22.244600287655395 27.939987219741454 27.280720516616658 22.534691975986497 70-71 22.262440955679626 27.694781365948913 27.34095029955162 22.70182737881984 72-73 22.288237136995225 27.689304427530885 27.281679547511615 22.74077888796227 74-75 22.186987334523614 27.790123250323322 27.27598056179653 22.746908853356533 76-77 22.420031939343414 27.761520977445304 27.155307169734797 22.66313991347649 78-79 22.412606484113894 27.70932549126558 27.085557782506115 22.792510242114407 80-81 22.433345112884787 27.761351417509793 27.093524895748068 22.71177857385735 82-83 22.395571546896793 27.762702320356986 27.19945589717088 22.642270235575346 84-85 22.53593253133713 27.747225802993192 27.138069653910602 22.57877201175907 86-87 22.418274353865858 27.74048674471974 27.2061794546634 22.635059446751 88-89 22.421630133403493 27.782038993796704 27.19587647186767 22.600454400932136 90-91 22.43721803264491 27.829858679765245 27.21997693571282 22.512946351877027 92-93 22.479259747286818 27.7621725692699 27.255877458200317 22.50269022524297 94-95 22.46084632004912 27.82090046028161 27.286823853156434 22.43142936651283 96-97 22.43904786149102 27.785316144968185 27.382098595960148 22.393537397580644 98-99 22.70686356911018 28.30725146994894 27.496992125588633 21.488892835352242 100-101 26.843028870517404 35.238905217885616 28.127243918828142 9.79082199276884 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2378.0 1 2080.0 2 2449.0 3 3350.0 4 4384.0 5 6673.0 6 8749.0 7 10261.0 8 11382.5 9 11525.5 10 10791.0 11 9946.0 12 10706.5 13 13702.0 14 20476.5 15 29472.5 16 36686.5 17 41296.0 18 43220.0 19 42725.0 20 41357.5 21 40535.0 22 41569.0 23 46560.5 24 55738.0 25 68814.0 26 85465.0 27 103537.5 28 123542.0 29 145408.0 30 166484.0 31 187390.0 32 208818.5 33 229345.0 34 248520.0 35 266026.5 36 286337.0 37 305450.0 38 321004.0 39 337089.0 40 353928.0 41 369900.0 42 381644.0 43 391870.5 44 402043.5 45 411627.5 46 420130.5 47 427300.5 48 438688.5 49 441025.5 50 431409.5 51 422661.0 52 407406.0 53 385075.5 54 360007.5 55 333312.0 56 307225.0 57 281082.0 58 251480.0 59 219257.5 60 186928.5 61 154906.5 62 125119.5 63 99169.5 64 76346.0 65 57993.5 66 44360.5 67 34275.0 68 26243.5 69 19395.0 70 14306.5 71 10682.5 72 7808.5 73 5570.0 74 3947.0 75 2809.0 76 2062.0 77 1416.0 78 944.5 79 639.0 80 445.5 81 335.5 82 261.5 83 187.0 84 112.5 85 75.0 86 60.5 87 47.5 88 34.0 89 20.5 90 11.0 91 5.0 92 4.0 93 3.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002182016201944651 3 0.0020660636501504907 4 6.219273232595864E-4 5 4.2164564288785523E-5 6 3.4785765538248057E-4 7 0.0 8 2.1082282144392762E-5 9 3.9002221967126605E-4 10-11 6.588213170122737E-4 12-13 1.633876866190439E-4 14-15 2.635285268049095E-5 16-17 4.321867839600516E-4 18-19 0.0 20-21 3.6895833364079864E-5 22-23 5.27140431317898E-6 24-25 0.0 26-27 8.44044032300088E-5 28-29 2.745715535316581E-4 30-31 6.349457975874282E-4 32-33 3.0269342986386123E-4 34-35 9.551312934681452E-4 36-37 1.450927145132642E-4 38-39 1.0312305457000671E-4 40-41 3.5092990942718367E-4 42-43 0.00131913105844194 44-45 3.8718474604328054E-4 46-47 1.6502962964733397E-4 48-49 4.6159833616879725E-4 50-51 0.0 52-53 4.2599434031019367E-4 54-55 6.225882562254785E-4 56-57 6.490597974545209E-4 58-59 6.827974593291078E-4 60-61 7.801164420524201E-4 62-63 5.698715015746816E-5 64-65 9.060699748202512E-4 66-67 0.0026058715314478407 68-69 0.001500257167976493 70-71 2.89903047656353E-4 72-73 0.0 74-75 1.0409000148918096E-4 76-77 1.4082600932465339E-5 78-79 0.0011792121619225533 80-81 2.2504022594038687E-4 82-83 1.253623617502031E-4 84-85 8.684614770702961E-4 86-87 2.432706584492879E-4 88-89 4.635953628410236E-5 90-91 3.929446319794531E-5 92-93 1.1199259952902313E-4 94-95 6.274490886179758E-4 96-97 3.32982979741482E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 330.0 20-21 821.0 22-23 1863.0 24-25 4089.0 26-27 7119.0 28-29 15417.0 30-31 32107.0 32-33 41656.0 34-35 58104.0 36-37 87680.0 38-39 95159.0 40-41 96269.0 42-43 105626.0 44-45 122562.0 46-47 123078.0 48-49 115515.0 50-51 105063.0 52-53 95720.0 54-55 107389.0 56-57 113859.0 58-59 115991.0 60-61 117816.0 62-63 113681.0 64-65 120194.0 66-67 127485.0 68-69 117691.0 70-71 110719.0 72-73 102707.0 74-75 104727.0 76-77 103062.0 78-79 108223.0 80-81 108782.0 82-83 102587.0 84-85 100849.0 86-87 104676.0 88-89 108203.0 90-91 111574.0 92-93 113064.0 94-95 122235.0 96-97 181493.0 98-99 726925.0 100-101 5134529.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.84216718333893 #Duplication Level Percentage of deduplicated Percentage of total 1 90.86793916890682 78.91168764911677 2 6.576375030034579 11.42213319637197 3 1.4372755642058368 3.7444837450587314 4 0.5189217223451983 1.8025714786787157 5 0.23328774441406702 1.0129606651115224 6 0.12264787042205344 0.6390604120723473 7 0.07197360362190594 0.4375240602964646 8 0.044397257994517686 0.30844432809933886 9 0.03150179688221544 0.24621158802788443 >10 0.09317108159812118 1.2791954826866858 >50 0.002138546272416166 0.1266301160830079 >100 3.5181316375588816E-4 0.05766876498172186 >500 1.880013853296035E-5 0.011428513414844925 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.1082282144392762E-5 0.0 1.0541141072196381E-5 0.0 3 0.0 2.1082282144392762E-5 0.0 1.0541141072196381E-5 0.0 4 0.0 5.27057053609819E-5 0.0 1.0541141072196381E-5 1.0541141072196381E-5 5 0.0 6.324684643317828E-5 0.0 2.1082282144392762E-5 1.0541141072196381E-5 6 8.432912857757105E-5 6.324684643317828E-5 0.0 2.1082282144392762E-5 2.1082282144392762E-5 7 8.432912857757105E-5 6.324684643317828E-5 0.0 2.1082282144392762E-5 2.1082282144392762E-5 8 9.487026964976743E-5 7.378798750537466E-5 0.0 2.1082282144392762E-5 3.162342321658914E-5 9 9.487026964976743E-5 2.0028168037173122E-4 0.0 5.27057053609819E-5 4.2164564288785523E-5 10-11 1.3703483393855294E-4 2.0028168037173122E-4 0.0 7.378798750537466E-5 4.2164564288785523E-5 12-13 1.7392882769124029E-4 2.0028168037173122E-4 0.0 8.432912857757105E-5 4.2164564288785523E-5 14-15 2.0028168037173125E-4 2.4244624466051676E-4 0.0 8.432912857757105E-5 4.7435134824883716E-5 16-17 2.635285268049095E-4 2.4244624466051676E-4 0.0 1.2122312233025836E-4 5.27057053609819E-5 18-19 2.740696678771059E-4 2.687990973410077E-4 0.0 1.581171160829457E-4 5.27057053609819E-5 20-21 2.740696678771059E-4 3.0569309109369503E-4 0.0 2.5825795626881133E-4 7.378798750537466E-5 22-23 3.0042252055759687E-4 3.425870848463824E-4 0.0 4.005633607434625E-4 1.10681981258062E-4 24-25 3.5839879645467696E-4 3.6893993752687334E-4 0.0 5.692216178986046E-4 1.3176426340245475E-4 26-27 3.8475164913516794E-4 3.794810785990697E-4 0.0 9.434321259615761E-4 1.3703483393855294E-4 28-29 3.900222196712661E-4 3.794810785990697E-4 0.0 0.003072742622545245 1.3703483393855294E-4 30-31 3.900222196712661E-4 4.058339312795606E-4 0.0 0.009813802338214831 1.4230540447465113E-4 32-33 4.216456428878552E-4 4.111045018156588E-4 0.0 0.022083690546251415 1.4757597501074933E-4 34-35 4.585396366405426E-4 4.954336303932299E-4 0.0 0.03745794480004984 1.4757597501074933E-4 36-37 4.848924893210335E-4 5.955744705790955E-4 0.0 0.05973137588560079 1.4757597501074933E-4 38-39 4.848924893210335E-4 6.324684643317828E-4 0.0 0.09650414651595787 1.4757597501074933E-4 40-41 5.165159125376227E-4 7.062564518371575E-4 0.0 0.17346501748406362 1.4757597501074933E-4 42-43 5.165159125376227E-4 7.273387339815502E-4 0.0 0.2056049566131904 1.5284654554684752E-4 44-45 5.217864830737208E-4 8.063972920230231E-4 0.0 0.2474901806635627 1.7392882769124029E-4 46-47 5.323276241459172E-4 8.538324268479069E-4 0.0 0.294097835914279 1.8974053929953486E-4 48-49 5.375981946820154E-4 8.538324268479069E-4 0.0 0.330918041679461 2.21363962516124E-4 50-51 5.428687652181137E-4 9.434321259615761E-4 0.0 0.36537176127393484 2.21363962516124E-4 52-53 5.586804768264082E-4 9.487026964976743E-4 0.0 0.41538420509097057 2.3190510358832037E-4 54-55 5.586804768264082E-4 9.539732670337724E-4 0.0 0.5188771281377946 2.4244624466051676E-4 56-57 5.586804768264082E-4 9.69784978642067E-4 0.0 0.6272611406421178 2.4244624466051676E-4 58-59 5.586804768264082E-4 9.855966902503617E-4 0.0 0.7235228409134151 2.4771681519661495E-4 60-61 5.903039000429973E-4 0.0010119495429308525 0.0 0.7824530900775291 2.529873857327131E-4 62-63 6.219273232595865E-4 0.0010435729661474416 0.0 0.8171966910514883 2.740696678771059E-4 64-65 6.219273232595865E-4 0.001138443235797209 0.0 0.8401131317424433 2.8461080894930227E-4 66-67 6.219273232595865E-4 0.0011542549474055038 0.0 0.8508229310717947 3.0569309109369503E-4 68-69 6.324684643317828E-4 0.001185878370622093 0.0 0.8615854361065073 3.0569309109369503E-4 70-71 6.482801759400774E-4 0.001191148941158191 0.0 0.8711989567643503 3.162342321658914E-4 72-73 6.746330286205684E-4 0.001191148941158191 0.0 0.8777555465112565 3.6893993752687334E-4 74-75 6.746330286205684E-4 0.0012069606527664856 0.0 0.8828679999312719 3.6893993752687334E-4 76-77 6.799035991566665E-4 0.001238584075983075 0.0 0.887279467469986 3.6893993752687334E-4 78-79 7.062564518371575E-4 0.001243854646519173 0.0 0.8916224175917309 3.6893993752687334E-4 80-81 7.062564518371575E-4 0.0012543957875913695 0.0 0.8933353530159628 3.847516491351679E-4 82-83 7.22068163445452E-4 0.001270207499199664 0.0 0.893888762922253 4.1637507235175704E-4 84-85 7.273387339815502E-4 0.0012754780697357621 0.0 0.8944421728285434 4.216456428878552E-4 86-87 7.273387339815502E-4 0.0012860192108079583 0.0 0.8946055605151624 4.216456428878552E-4 88-89 7.273387339815502E-4 0.0012965603518801548 0.0 0.8946688073615956 4.321867839600516E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9025 0.0 43.468754 1 GTATCAA 15470 0.0 32.893345 1 TCAACGC 17780 0.0 27.545692 4 ATCAACG 18110 0.0 27.111029 3 CAACGCA 18570 0.0 26.417868 5 TATCAAC 19180 0.0 25.959072 2 AACGCAG 19100 0.0 25.727333 6 GTACATG 23295 0.0 21.861609 1 ACGCAGA 22545 0.0 21.814066 7 TACATGG 23105 0.0 21.707424 2 CGCAGAG 22860 0.0 21.531242 8 ACATGGG 23730 0.0 20.348024 3 CTTATAC 16155 0.0 19.909739 1 CATGGGG 18350 0.0 18.235987 4 TATACAC 19595 0.0 18.009956 3 GCAGAGT 28380 0.0 17.271801 9 GAGTACT 16140 0.0 17.05915 12-13 TTATACA 19650 0.0 17.05056 2 AGAGTAC 24495 0.0 16.33049 10-11 CAGAGTA 27345 0.0 15.994779 10-11 >>END_MODULE