##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139771_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10467697 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.511520155770654 34.0 31.0 34.0 31.0 34.0 2 32.698989567619314 34.0 31.0 34.0 31.0 34.0 3 32.793296749036585 34.0 31.0 34.0 31.0 34.0 4 36.20706789659655 37.0 37.0 37.0 35.0 37.0 5 36.05422596775585 37.0 35.0 37.0 35.0 37.0 6 36.078593600865595 37.0 35.0 37.0 35.0 37.0 7 36.09730717272386 37.0 35.0 37.0 35.0 37.0 8 36.09290878404295 37.0 35.0 37.0 35.0 37.0 9 37.967203578781465 39.0 38.0 39.0 35.0 39.0 10-11 37.84775161145761 39.0 38.0 39.0 35.0 39.0 12-13 37.87820878842787 39.0 38.0 39.0 35.0 39.0 14-15 39.21224300818031 40.0 39.0 41.0 36.0 41.0 16-17 39.182231296912775 40.0 39.0 41.0 36.0 41.0 18-19 39.20946918887698 40.0 39.0 41.0 36.0 41.0 20-21 39.24945877550287 40.0 39.0 41.0 36.0 41.0 22-23 39.21307859846359 40.0 39.0 41.0 36.0 41.0 24-25 39.20533115847468 40.0 39.0 41.0 36.0 41.0 26-27 39.10881950166389 40.0 39.0 41.0 36.0 41.0 28-29 39.03464823963557 40.0 39.0 41.0 36.0 41.0 30-31 38.92713526821431 40.0 38.0 41.0 35.0 41.0 32-33 38.86965911283836 40.0 38.0 41.0 35.0 41.0 34-35 38.812188666432306 40.0 38.0 41.0 35.0 41.0 36-37 38.750850635578 40.0 38.0 41.0 35.0 41.0 38-39 38.669912026611186 40.0 38.0 41.0 35.0 41.0 40-41 38.65339064015435 40.0 38.0 41.0 35.0 41.0 42-43 38.600844532841236 40.0 38.0 41.0 35.0 41.0 44-45 38.575446468730185 40.0 38.0 41.0 35.0 41.0 46-47 38.47479041894379 40.0 38.0 41.0 34.0 41.0 48-49 38.464437513153094 40.0 38.0 41.0 34.0 41.0 50-51 38.39866480059342 40.0 38.0 41.0 34.0 41.0 52-53 38.23379939665603 40.0 37.5 41.0 34.0 41.0 54-55 38.09454937717352 40.0 37.0 41.0 33.5 41.0 56-57 37.90641615095467 40.0 37.0 41.0 33.0 41.0 58-59 37.69216207985126 39.0 36.5 41.0 33.0 41.0 60-61 37.53179661067812 39.0 36.0 41.0 33.0 41.0 62-63 37.363923555482344 39.0 35.5 40.5 33.0 41.0 64-65 37.09849696307549 39.0 35.0 40.0 32.0 41.0 66-67 36.89785242697799 38.0 35.0 40.0 32.0 41.0 68-69 36.61688250492832 37.5 35.0 40.0 32.0 41.0 70-71 36.28151947458626 37.0 35.0 39.5 31.5 41.0 72-73 36.02175782136218 36.5 35.0 39.0 31.0 41.0 74-75 35.66943230519228 36.0 34.5 39.0 31.0 40.5 76-77 33.659395100984966 34.5 32.0 36.5 28.5 39.0 78-79 34.80047881452984 35.0 34.0 37.0 30.5 39.0 80-81 34.77038470448973 35.0 34.0 37.0 31.0 39.0 82-83 34.52897648842292 35.0 34.0 36.0 31.0 38.5 84-85 34.25434879505736 35.0 34.0 36.0 31.0 37.0 86-87 34.03544293053141 35.0 34.0 36.0 30.5 37.0 88-89 33.82872438362051 35.0 34.0 35.0 30.0 36.5 90-91 33.77721742260716 35.0 34.0 35.0 30.0 36.0 92-93 33.69741007779183 35.0 34.0 35.0 30.0 36.0 94-95 33.61675621473945 35.0 34.0 35.0 30.0 36.0 96-97 33.618543958114984 35.0 34.0 35.0 30.5 35.5 98-99 33.676558227452794 35.0 34.0 35.0 31.0 35.0 100-101 32.447067894572605 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 6.0 19 20.0 20 55.0 21 217.0 22 734.0 23 2545.0 24 6402.0 25 14200.0 26 26554.0 27 43717.0 28 64864.0 29 91182.0 30 122245.0 31 162158.0 32 216128.0 33 297117.0 34 440067.0 35 696834.0 36 1280260.0 37 2479211.0 38 3077246.0 39 1417351.0 40 28583.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.27869797912568 20.018109045380278 13.067697698930338 24.6354952765637 2 15.186468774716472 21.508803040431097 39.95952983067626 23.345198354176176 3 18.444643028080733 25.89376488780184 30.414029685514983 25.24756239860245 4 12.689277509060549 17.667021761271148 38.500298969213006 31.1434017604553 5 13.111394034428011 37.83222804404828 35.8750640183796 13.18131390314412 6 30.476546857325026 37.772208666713354 18.543611327040747 13.20763314892088 7 26.678810057264744 32.33286175555139 23.29526733530785 17.693060851876012 8 24.7978184308962 36.36432853651162 21.45380621044079 17.38404682215139 9 25.7107297268147 16.190308872367524 21.086963395915628 37.011998004902146 10-11 24.244848449993626 26.55145488474228 29.21109183001477 19.992604835249324 12-13 24.858645904863007 24.11017566063324 29.22988026768863 21.801298166815123 14-15 21.965247457307814 25.608896018125098 26.488440219572706 25.937416304994382 16-17 21.893956321997425 28.772946055031078 27.218719313190576 22.11437830978093 18-19 21.922950196208394 28.067950381062808 28.64055961879676 21.36853980393204 20-21 22.54049041727428 27.33774312211288 28.515110295354006 21.606656165258837 22-23 22.20478814732602 27.325786487298892 28.401698857281428 22.06772650809366 24-25 22.030820430401484 27.40585257214983 28.552046074052388 22.011280923396292 26-27 22.025682291337002 27.578368918352215 28.451279601621675 21.944669188689105 28-29 21.901598719845175 27.600434105844734 28.437861065077026 22.060106109233065 30-31 22.123794115884714 27.476306549224038 28.403226077056743 21.9966732578345 32-33 21.90957531682514 27.662903227512874 28.359493895387956 22.068027560274032 34-35 22.073814862712567 27.69572772180986 28.39752074797773 21.832936667499848 36-37 22.110169372889448 27.603720285082773 28.25672712439396 22.029383217633818 38-39 21.941485011823318 27.69679753537886 28.374956763248075 21.986760689549747 40-41 22.159713473876785 27.55619537796293 28.28594042236298 21.998150725797306 42-43 22.1173135100424 27.64047077050033 28.139174011104114 22.103041708353157 44-45 22.1172810180295 27.7398691264685 28.0257255625533 22.117124292948702 46-47 22.270937880408816 27.64584781138022 27.765345790812475 22.317868517398495 48-49 22.12240903828642 27.7896251476945 27.79058981023843 22.29737600378065 50-51 22.06327921239269 27.906886064103563 27.785783851337953 22.244050872165793 52-53 22.264780364894037 27.813412882418408 27.70498653995862 22.21682021272893 54-55 22.19054609088986 27.69638374478064 27.720108659357805 22.39296150497169 56-57 22.237831044519904 27.85267527518036 27.612841399033478 22.29665228126626 58-59 22.157538270264602 27.87051026909562 27.736493864436966 22.235457596202806 60-61 22.267156577702245 27.8850874017328 27.62238307011336 22.225372950451597 62-63 22.18642833118401 28.010537601332295 27.59922522939734 22.203808838086353 64-65 22.157356399796253 27.966951061235623 27.576512510126488 22.299180028841636 66-67 22.178175724321385 27.993716848618234 27.435668167207332 22.39243925985305 68-69 22.178119923971973 27.953139041832426 27.472855218879705 22.395885815315896 70-71 22.194049304990617 27.735141089024562 27.52217405502495 22.548635550959872 72-73 22.206956483583884 27.789909335375214 27.47482770442455 22.528306476616358 74-75 22.08940624907258 27.856460068761074 27.469005795387748 22.585127886778594 76-77 22.27745176181688 27.76425767781101 27.37952074560312 22.578769814768993 78-79 22.250642290760286 27.791616569890632 27.323198903515898 22.63454223583318 80-81 22.24007739097496 27.832763083262453 27.33243078659119 22.594728739171398 82-83 22.27032257472901 27.82100323030648 27.354571307940255 22.554102887024257 84-85 22.361268355704997 27.81785513891632 27.33188639201064 22.48899011336804 86-87 22.276752875630585 27.8331797790346 27.394206469050292 22.495860876284528 88-89 22.26287727193361 27.80263847480933 27.401862442492053 22.532621810765004 90-91 22.223872854986354 27.825908797819338 27.451138262801898 22.499080084392407 92-93 22.234068332532317 27.745907390296015 27.51534950724532 22.50467476992635 94-95 22.182491397339742 27.76443280863971 27.561311191902533 22.49176460211801 96-97 22.166801255733724 27.802466709736134 27.578757757261137 22.45197427726901 98-99 22.432252926832284 28.416005639265073 27.61728829445123 21.534453139451408 100-101 26.553228630685776 35.41262721015424 28.26746378717258 9.766680371987395 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2680.0 1 2335.0 2 2748.5 3 3712.0 4 4772.0 5 7277.5 6 9655.0 7 11468.5 8 12749.0 9 12880.5 10 11998.5 11 10968.5 12 11689.5 13 14962.5 14 22347.0 15 31972.0 16 39872.0 17 44972.0 18 47012.0 19 46509.0 20 45228.5 21 44656.5 22 46326.0 23 52712.0 24 63789.0 25 78945.5 26 98950.5 27 120910.5 28 144547.0 29 170686.0 30 194566.0 31 217558.5 32 240936.5 33 263038.5 34 283537.5 35 302542.0 36 324247.0 37 343478.5 38 359306.5 39 374668.0 40 389513.5 41 405165.0 42 416562.0 43 426327.0 44 437348.0 45 446059.5 46 453160.5 47 458846.0 48 458059.0 49 453071.0 50 447424.0 51 435033.5 52 415821.5 53 395199.5 54 373732.0 55 349567.5 56 324455.0 57 297947.5 58 268464.5 59 235279.5 60 199794.0 61 165400.0 62 133695.0 63 105669.0 64 80907.0 65 61356.0 66 46790.0 67 36192.0 68 27972.0 69 20486.5 70 14900.0 71 10993.5 72 7997.5 73 5725.0 74 3947.0 75 2759.0 76 1990.5 77 1390.0 78 924.5 79 593.5 80 410.5 81 309.0 82 241.5 83 175.5 84 120.5 85 82.5 86 59.0 87 42.0 88 25.0 89 16.0 90 11.5 91 7.0 92 5.0 93 5.0 94 4.0 95 2.0 96 1.0 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002235448733374686 3 0.0022450019330899624 4 6.114047817776918E-4 5 0.0 6 3.6302158918050456E-4 7 0.0 8 1.910639943055287E-5 9 3.8212798861105745E-4 10-11 4.442237867603543E-4 12-13 1.2419159629859365E-4 14-15 2.388299928819109E-5 16-17 4.585535863332689E-4 18-19 0.0 20-21 6.209889784487686E-5 22-23 0.0 24-25 0.0 26-27 9.561315376928087E-5 28-29 2.9186556786776365E-4 30-31 6.75889733335615E-4 32-33 4.087646252977309E-4 34-35 8.887167697811568E-4 36-37 1.361016407052787E-4 38-39 1.1770093007765368E-4 40-41 2.7720720669435604E-4 42-43 0.0012896943424408416 44-45 4.6006183028774085E-4 46-47 1.3827209151441073E-4 48-49 4.512110894616227E-4 50-51 0.0 52-53 4.510006138383649E-4 54-55 7.670442598484192E-4 56-57 6.459654814502869E-4 58-59 7.308833208524474E-4 60-61 7.400694229634194E-4 62-63 5.633872645182081E-5 64-65 7.530098574124494E-4 66-67 0.0025792618441756883 68-69 0.0013959157148437454 70-71 2.4383208889761136E-4 72-73 0.0 74-75 1.5266102517007813E-4 76-77 6.189262063568054E-6 78-79 0.001129400001229791 80-81 2.4187803783698144E-4 82-83 8.395095946582909E-5 84-85 9.10278557681307E-4 86-87 1.99291359782884E-4 88-89 3.372058502787141E-5 90-91 4.1113529804842295E-5 92-93 1.2541285214187037E-4 94-95 6.735461488651846E-4 96-97 2.1705964350413563E-5 98-99 2.263189130717353E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 371.0 20-21 906.0 22-23 1834.0 24-25 4384.0 26-27 7121.0 28-29 15272.0 30-31 31336.0 32-33 41568.0 34-35 57973.0 36-37 86568.0 38-39 95711.0 40-41 96822.0 42-43 107447.0 44-45 125202.0 46-47 124925.0 48-49 115855.0 50-51 106418.0 52-53 99779.0 54-55 108840.0 56-57 112888.0 58-59 111836.0 60-61 113638.0 62-63 108217.0 64-65 115678.0 66-67 122507.0 68-69 118385.0 70-71 113769.0 72-73 107361.0 74-75 109985.0 76-77 107970.0 78-79 113315.0 80-81 113978.0 82-83 108226.0 84-85 107573.0 86-87 111559.0 88-89 115834.0 90-91 120410.0 92-93 121958.0 94-95 134030.0 96-97 199758.0 98-99 825433.0 100-101 5925057.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.83655576706649 #Duplication Level Percentage of deduplicated Percentage of total 1 90.82330958385889 78.86783387628307 2 6.571008761082335 11.412075374552174 3 1.5060145125893998 3.9233133962544255 4 0.5238692100622941 1.8196399149689388 5 0.21806766779063516 0.9468122597547809 6 0.12165083628914633 0.6338243777719638 7 0.06877435674030921 0.418048978509679 8 0.04493836091982361 0.31218339872758594 9 0.02727621594448222 0.21317153822798204 >10 0.09259192162108093 1.2522260181870217 >50 0.002028196865743715 0.11870171615626422 >100 4.3630750542970377E-4 0.059389641683431416 >500 3.4068730491721217E-5 0.022779508922740853 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.553199715276436E-6 2 0.0 0.0 0.0 0.0 9.553199715276436E-6 3 0.0 0.0 9.553199715276436E-6 0.0 9.553199715276436E-6 4 0.0 1.9106399430552872E-5 9.553199715276436E-6 9.553199715276436E-6 9.553199715276436E-6 5 0.0 1.9106399430552872E-5 9.553199715276436E-6 9.553199715276436E-6 9.553199715276436E-6 6 0.0 1.9106399430552872E-5 9.553199715276436E-6 9.553199715276436E-6 2.865959914582931E-5 7 0.0 1.9106399430552872E-5 1.9106399430552872E-5 9.553199715276436E-6 2.865959914582931E-5 8 0.0 2.865959914582931E-5 1.9106399430552872E-5 9.553199715276436E-6 2.865959914582931E-5 9 0.0 4.776599857638218E-5 1.9106399430552872E-5 9.553199715276436E-6 5.731919829165862E-5 10-11 0.0 4.776599857638218E-5 2.388299928819109E-5 3.8212798861105745E-5 5.731919829165862E-5 12-13 0.0 4.776599857638218E-5 2.865959914582931E-5 4.776599857638218E-5 6.687239800693505E-5 14-15 0.0 7.642559772221149E-5 2.865959914582931E-5 4.776599857638218E-5 9.075539729512614E-5 16-17 0.0 7.642559772221149E-5 2.865959914582931E-5 7.642559772221149E-5 1.0508519686804079E-4 18-19 0.0 9.553199715276436E-5 2.865959914582931E-5 1.0986179672567901E-4 1.0508519686804079E-4 20-21 0.0 1.1941499644095546E-4 3.8212798861105745E-5 1.8151079459025228E-4 1.0986179672567901E-4 22-23 0.0 1.4329799572914654E-4 3.8212798861105745E-5 2.722661918853784E-4 1.337447960138701E-4 24-25 0.0 1.5285119544442298E-4 3.8212798861105745E-5 3.439151897499517E-4 1.624043951596994E-4 26-27 0.0 1.6718099501733763E-4 4.2989398718743966E-5 4.7288338590618353E-4 1.624043951596994E-4 28-29 0.0 1.7195759487497584E-4 4.776599857638218E-5 0.0015858311527358884 1.624043951596994E-4 30-31 0.0 2.1972359345135803E-4 6.687239800693505E-5 0.0046619614610549 1.624043951596994E-4 32-33 0.0 2.1972359345135803E-4 7.642559772221149E-5 0.010006976701752067 1.7195759487497584E-4 34-35 0.0 2.5315979245482554E-4 7.642559772221149E-5 0.017472802279240602 1.7195759487497584E-4 36-37 0.0 2.961491911735695E-4 7.642559772221149E-5 0.028487641550954332 1.7673419473261405E-4 38-39 0.0 3.29585390177037E-4 8.597879743748792E-5 0.048597126951611225 1.8628739444789052E-4 40-41 0.0 3.8212798861105745E-4 9.553199715276436E-5 0.0926755904378967 2.0539379387844335E-4 42-43 0.0 4.0123438804161033E-4 9.553199715276436E-5 0.11030602051243937 2.1017039373608158E-4 44-45 0.0 4.967663851943747E-4 9.553199715276436E-5 0.1332432530288181 2.1494699359371982E-4 46-47 0.0 5.731919829165861E-4 9.553199715276436E-5 0.15933304145123803 2.2450019330899623E-4 48-49 0.0 5.731919829165861E-4 9.553199715276436E-5 0.18223683776861327 2.674895920277402E-4 50-51 0.0 6.639473802117123E-4 9.553199715276436E-5 0.2043477185096206 2.674895920277402E-4 52-53 0.0 6.687239800693505E-4 9.553199715276436E-5 0.23457881900861288 2.9137259131593125E-4 54-55 0.0 6.78277179784627E-4 9.553199715276436E-5 0.2953514989973439 3.2003219046176055E-4 56-57 0.0 6.878303794999034E-4 9.553199715276436E-5 0.3634180469686885 3.29585390177037E-4 58-59 0.0 6.878303794999034E-4 9.553199715276436E-5 0.43062003036580065 3.391385898923135E-4 60-61 0.0 6.926069793575416E-4 1.0030859701040258E-4 0.4741396316687424 3.439151897499517E-4 62-63 0.0 6.973835792151798E-4 1.0508519686804079E-4 0.49437808526555554 3.5346838946522815E-4 64-65 0.0 7.738091769373913E-4 1.2419159629859368E-4 0.5135131442952543 3.582449893228663E-4 66-67 0.0 7.738091769373913E-4 1.337447960138701E-4 0.5230950036096764 3.7257478889578103E-4 68-69 0.0 7.88138976510306E-4 1.337447960138701E-4 0.5308760847777692 3.8212798861105745E-4 70-71 0.0 7.929155763679442E-4 1.337447960138701E-4 0.5387622511427299 3.8212798861105745E-4 72-73 0.0 7.929155763679442E-4 1.337447960138701E-4 0.5450387033556665 4.4900038661799247E-4 74-75 0.0 8.024687760832207E-4 1.337447960138701E-4 0.5499729310086068 4.4900038661799247E-4 76-77 0.0 8.263517753714117E-4 1.3852139587150833E-4 0.5539757216893075 4.537769864756307E-4 78-79 0.0 8.311283752290499E-4 1.4329799572914654E-4 0.5575581715825363 4.5855358633326894E-4 80-81 0.0 8.311283752290499E-4 1.4329799572914654E-4 0.5592538645319978 4.728833859061836E-4 82-83 0.0 8.311283752290499E-4 1.4329799572914654E-4 0.5598891523130637 5.158727846249275E-4 84-85 0.0 8.311283752290499E-4 1.4329799572914654E-4 0.5604957804949837 5.206493844825658E-4 86-87 0.0 8.406815749443263E-4 1.4329799572914654E-4 0.5607919296861573 5.25425984340204E-4 88-89 0.0 8.884475735207086E-4 1.4329799572914654E-4 0.5609065680827406 5.445323837707568E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10210 0.0 44.17559 1 GTATCAA 17565 0.0 33.44702 1 TCAACGC 19795 0.0 28.782242 4 ATCAACG 20175 0.0 28.240526 3 CAACGCA 20515 0.0 27.792055 5 AACGCAG 21285 0.0 26.806026 6 TATCAAC 21680 0.0 26.58512 2 ACGCAGA 25600 0.0 22.336164 7 CGCAGAG 26040 0.0 21.958748 8 GTACATG 27135 0.0 21.93957 1 TACATGG 26750 0.0 21.654257 2 ACATGGG 27050 0.0 20.956259 3 CATGGGG 20445 0.0 19.095673 4 GCAGAGT 31650 0.0 18.053509 9 GTGGTAT 5740 0.0 17.381779 1 GAGTACT 18010 0.0 17.30526 12-13 AGAGTAC 27920 0.0 16.508152 10-11 CAGAGTA 30700 0.0 16.42329 10-11 TATCGCG 395 1.6007107E-10 15.655475 7 TGGTATC 5390 0.0 15.603866 2 >>END_MODULE