##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139769_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12130240 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50630135924763 34.0 31.0 34.0 31.0 34.0 2 32.702512810958396 34.0 31.0 34.0 31.0 34.0 3 32.79970008837418 34.0 31.0 34.0 31.0 34.0 4 36.21370327380167 37.0 37.0 37.0 35.0 37.0 5 36.05611851043343 37.0 35.0 37.0 35.0 37.0 6 36.07826992705833 37.0 35.0 37.0 35.0 37.0 7 36.10019628630596 37.0 35.0 37.0 35.0 37.0 8 36.09743030640779 37.0 35.0 37.0 35.0 37.0 9 37.97706739520405 39.0 38.0 39.0 35.0 39.0 10-11 37.85967161408183 39.0 38.0 39.0 35.0 39.0 12-13 37.89138788680191 39.0 38.0 39.0 35.0 39.0 14-15 39.231953160036404 40.0 39.0 41.0 36.0 41.0 16-17 39.20428466378242 40.0 39.0 41.0 36.0 41.0 18-19 39.23009355132298 40.0 39.0 41.0 36.0 41.0 20-21 39.27050415746977 40.0 39.0 41.0 36.0 41.0 22-23 39.23598113997102 40.0 39.0 41.0 36.0 41.0 24-25 39.229918871826655 40.0 39.0 41.0 36.0 41.0 26-27 39.136080506824044 40.0 39.0 41.0 36.0 41.0 28-29 39.06500110955472 40.0 39.0 41.0 36.0 41.0 30-31 38.959486409956384 40.0 38.5 41.0 35.5 41.0 32-33 38.908367244043916 40.0 38.0 41.0 35.0 41.0 34-35 38.85862639257321 40.0 38.0 41.0 35.0 41.0 36-37 38.800365455803984 40.0 38.0 41.0 35.0 41.0 38-39 38.72723378549799 40.0 38.0 41.0 35.0 41.0 40-41 38.71173842203024 40.0 38.0 41.0 35.0 41.0 42-43 38.665470480525 40.0 38.0 41.0 35.0 41.0 44-45 38.64989302399957 40.0 38.0 41.0 35.0 41.0 46-47 38.556084749801634 40.0 38.0 41.0 34.5 41.0 48-49 38.55329624231519 40.0 38.0 41.0 34.0 41.0 50-51 38.498427923301136 40.0 38.0 41.0 34.0 41.0 52-53 38.34017792989564 40.0 38.0 41.0 34.0 41.0 54-55 38.21052928553826 40.0 37.5 41.0 34.0 41.0 56-57 38.039531498181745 40.0 37.0 41.0 34.0 41.0 58-59 37.83623145475465 39.5 36.5 41.0 33.0 41.0 60-61 37.69211195104635 39.0 36.0 41.0 33.0 41.0 62-63 37.533903824293304 39.0 36.0 41.0 33.0 41.0 64-65 37.272221131952605 39.0 35.0 40.0 33.0 41.0 66-67 37.07220408784876 38.5 35.0 40.0 32.0 41.0 68-69 36.794242922800194 38.0 35.0 40.0 32.0 41.0 70-71 36.46076198168278 37.0 35.0 39.5 32.0 41.0 72-73 36.196536156815654 37.0 35.0 39.0 32.0 41.0 74-75 35.83360389178954 36.0 35.0 39.0 31.5 40.5 76-77 33.811853584609885 34.5 32.0 36.5 29.0 39.0 78-79 34.93833515753142 35.0 34.0 37.0 31.0 39.0 80-81 34.89474748591719 35.0 34.0 37.0 31.0 39.0 82-83 34.63930468288743 35.0 34.0 36.5 31.0 39.0 84-85 34.35770230866129 35.0 34.0 36.0 31.0 37.0 86-87 34.13312886490698 35.0 34.0 36.0 31.0 37.0 88-89 33.920894666083434 35.0 34.0 35.0 30.5 37.0 90-91 33.859323051574634 35.0 34.0 35.0 31.0 36.0 92-93 33.76968876025596 35.0 34.0 35.0 31.0 36.0 94-95 33.679395886910164 35.0 34.0 35.0 31.0 36.0 96-97 33.677065212850344 35.0 34.0 35.0 31.0 36.0 98-99 33.72789178692837 35.0 34.0 35.0 31.0 35.0 100-101 32.50066304040203 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 5.0 19 20.0 20 69.0 21 200.0 22 789.0 23 2651.0 24 6737.0 25 14955.0 26 27889.0 27 45756.0 28 69999.0 29 99158.0 30 133977.0 31 178389.0 32 239878.0 33 329598.0 34 489183.0 35 771067.0 36 1416222.0 37 2803662.0 38 3697752.0 39 1766308.0 40 35974.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.06521058115915 20.206986836204393 13.057128300841534 24.67067428179492 2 15.08614506639899 21.778657286510374 40.04182521291831 23.09337243417232 3 18.22801636345859 26.143240114513212 30.57657926814891 25.052164253879283 4 12.564373619711459 17.85682517209373 39.04217115631505 30.536630051879765 5 13.012398189351421 37.990125338832975 36.06768176620428 12.929794705611325 6 30.065130911028977 38.14590626606272 18.84899529561998 12.939967527288331 7 26.356988814730787 32.50967829160841 23.771096037671143 17.36223685598966 8 24.5078826166284 36.46585276659086 21.76917250414584 17.257092112634904 9 25.695914548404808 16.18560930913772 21.41890781751216 36.69956832494531 10-11 23.980301843242845 26.662881614071292 29.601133801045915 19.755682741639944 12-13 24.65453652718424 24.297247223588414 29.4949409846115 21.553275264615845 14-15 21.822692560255735 25.794635231937583 26.768078822542236 25.61459338526445 16-17 21.688997371147284 28.82146632991477 27.5519279510435 21.937608347894447 18-19 21.722467980847863 28.310433264304745 28.81773567546891 21.149363079378478 20-21 22.370942175357335 27.60131994231312 28.66126237579888 21.366475506530666 22-23 22.1071386624378 27.512709750197175 28.52831895885895 21.851832628506077 24-25 21.904998283154164 27.58335196840591 28.59306432219516 21.91858542624476 26-27 21.856692387746108 27.796591388708507 28.50152528241146 21.84519094113392 28-29 21.843282466639636 27.87600242125352 28.487286354518755 21.793428757588096 30-31 22.06740992842187 27.742544642977208 28.394354763465714 21.795690665135208 32-33 21.817975758390734 27.89382274313174 28.38422730166361 21.903974196813913 34-35 21.99102152250953 27.91791022816419 28.347688420827684 21.7433798284986 36-37 22.03430400361654 27.826110830764456 28.30502009624435 21.834565069374655 38-39 21.824330328810778 27.979768536163103 28.385920265939923 21.8099808690862 40-41 22.058748122539395 27.824621065814426 28.294648647854743 21.821982163791436 42-43 21.95136765552619 27.919027367003597 28.100414421597193 22.029190555873022 44-45 22.011978482555545 27.968083465652825 28.035345263747676 21.984592788043958 46-47 22.105785893046995 27.927206951985102 27.82885050270108 22.13815665226683 48-49 21.997241455897072 28.005711155726342 27.87135602283486 22.12569136554173 50-51 22.01375363159116 28.108019736048607 27.81330560307741 22.06492102928282 52-53 22.198524628921238 27.99318199236994 27.67792657047326 22.13036680823556 54-55 22.12378795225563 27.929036066000425 27.748784226055722 22.198391755688224 56-57 22.110166471734576 28.060942522860728 27.704307441679415 22.124583563725285 58-59 22.10843029683198 28.044418587833096 27.698581854708625 22.148569260626296 60-61 22.166150063136808 28.043502288281395 27.673547975660785 22.116799672921008 62-63 22.17757184887079 28.056872751753893 27.67740430881415 22.088151090561162 64-65 22.1365572157023 28.01539169400837 27.63591468214402 22.212136408145305 66-67 22.148148811609715 28.06483309487733 27.546055155346867 22.240962938166085 68-69 22.128937953541246 28.042990091477936 27.609590672417582 22.218481282563236 70-71 22.13066649078914 27.89165783655659 27.661525793778747 22.316149878875528 72-73 22.195048519792635 27.90174562025044 27.586226315266316 22.316979544690607 74-75 22.06838200643589 28.021354229780133 27.5841122376163 22.326151526167685 76-77 22.176576592717506 27.953560609458005 27.535637994567935 22.334224803256554 78-79 22.16876249204145 27.94087262950489 27.471639629765598 22.41872524868806 80-81 22.17103158896787 27.93100179277864 27.49825940407059 22.399707214182897 82-83 22.221120594878766 27.928318707897738 27.579255773310983 22.271304923912517 84-85 22.2548153547823 27.908542084901367 27.532567620384228 22.304074939932107 86-87 22.126737640485512 27.938284580095356 27.577824958794366 22.357152820624766 88-89 22.22380450928317 27.880488052992654 27.529526959951404 22.366180477772772 90-91 22.225352742124933 27.923141175544767 27.56526202937356 22.28624405295674 92-93 22.267129053775633 27.878550311035283 27.580372271326265 22.273948363862818 94-95 22.175063984896624 27.90165879131229 27.617829158502726 22.30544806528836 96-97 22.164214340285938 27.904222525758637 27.658838019659765 22.272725114295664 98-99 22.413611007416577 28.46119666532646 27.708529300396663 21.4166630268603 100-101 26.48791085696422 35.52879592402234 28.30749917989336 9.675794039120083 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2287.0 1 2066.5 2 2653.0 3 3701.5 4 5062.0 5 8051.0 6 10512.5 7 12032.5 8 13024.5 9 12932.0 10 12006.0 11 11079.0 12 11956.0 13 15537.0 14 23408.5 15 33660.0 16 42194.5 17 47852.5 18 50368.0 19 50589.0 20 50227.5 21 50634.0 22 53656.0 23 61554.5 24 74846.5 25 93540.0 26 118209.0 27 145576.0 28 174757.5 29 206177.5 30 235282.0 31 263683.5 32 292627.5 33 320506.0 34 347494.0 35 373889.0 36 402867.5 37 427997.0 38 449813.5 39 470286.5 40 487810.0 41 504756.0 42 518098.5 43 529386.0 44 538905.5 45 544594.5 46 546302.5 47 544150.5 48 539098.0 49 529781.0 50 516715.0 51 498415.5 52 475032.5 53 448277.5 54 418973.5 55 389285.0 56 358513.5 57 326005.0 58 291628.5 59 253947.5 60 215267.0 61 178666.0 62 143945.5 63 113457.5 64 87240.0 65 66317.0 66 50550.0 67 38854.5 68 29807.5 69 22120.0 70 16302.5 71 11918.0 72 8619.5 73 6337.5 74 4553.0 75 3168.0 76 2169.5 77 1426.0 78 961.0 79 672.0 80 455.5 81 305.5 82 223.5 83 170.0 84 128.0 85 89.0 86 59.0 87 44.0 88 35.5 89 25.0 90 15.5 91 11.0 92 8.5 93 5.0 94 1.5 95 0.0 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019455509536497216 3 0.0023577439523043238 4 6.347772179280871E-4 5 8.243859973092041E-6 6 4.5341229852006223E-4 7 0.0 8 3.2975439892368166E-5 9 4.204368586276941E-4 10-11 5.729482681298969E-4 12-13 1.1541403962328857E-4 14-15 3.709736987891419E-5 16-17 3.586079088295038E-4 18-19 0.0 20-21 7.419847101684057E-5 22-23 1.6490238294249753E-5 24-25 0.0 26-27 7.838138965088435E-5 28-29 2.147082412290032E-4 30-31 6.537339608131176E-4 32-33 3.197729661774888E-4 34-35 8.639899506699303E-4 36-37 1.2613481389817287E-4 38-39 1.486768335283761E-4 40-41 3.1349961553351946E-4 42-43 0.0013067998265299207 44-45 3.6930323383014586E-4 46-47 1.694567799813749E-4 48-49 3.165117296534052E-4 50-51 0.0 52-53 4.312006796835488E-4 54-55 6.290490041849128E-4 56-57 6.756479309019619E-4 58-59 6.464647088402554E-4 60-61 7.04232102381263E-4 62-63 5.450065410694138E-5 64-65 7.629133754525092E-4 66-67 0.0023612642738170906 68-69 0.00140950148565587 70-71 3.038383320239473E-4 72-73 0.0 74-75 1.0232785640536565E-4 76-77 5.462326389514781E-6 78-79 9.532434107049235E-4 80-81 1.9128936854760563E-4 82-83 1.484910228038806E-4 84-85 7.416986393828187E-4 86-87 2.881504592324436E-4 88-89 4.181377649246211E-5 90-91 2.4288510587240323E-5 92-93 1.4824565169251752E-4 94-95 6.098552737989262E-4 96-97 1.92508728185312E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 446.0 20-21 1031.0 22-23 2205.0 24-25 4724.0 26-27 8547.0 28-29 19355.0 30-31 41642.0 32-33 55817.0 34-35 77367.0 36-37 115602.0 38-39 129787.0 40-41 124476.0 42-43 137692.0 44-45 159076.0 46-47 157078.0 48-49 146355.0 50-51 133382.0 52-53 129810.0 54-55 141211.0 56-57 144723.0 58-59 141571.0 60-61 134511.0 62-63 128982.0 64-65 134533.0 66-67 141000.0 68-69 140479.0 70-71 135483.0 72-73 127326.0 74-75 130384.0 76-77 130169.0 78-79 134924.0 80-81 133934.0 82-83 126381.0 84-85 125566.0 86-87 130525.0 88-89 135125.0 90-91 139859.0 92-93 139903.0 94-95 152369.0 96-97 224993.0 98-99 928738.0 100-101 6683159.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.43620439378364 #Duplication Level Percentage of deduplicated Percentage of total 1 91.33660428007275 79.86126000466575 2 6.263179595174982 10.952573024773898 3 1.3583776233292262 3.5631415055206874 4 0.48636896901021254 1.7010502634068305 5 0.21387146233190577 0.9350054447224957 6 0.11904425226478725 0.6245266543757448 7 0.06383704078313895 0.39071679820661875 8 0.03836416428700691 0.26835335279963446 9 0.023940720013861272 0.1883957119619689 >10 0.09382774670885916 1.2890997806710345 >50 0.0020756751245083575 0.12383954207212118 >100 4.653051915657762E-4 0.070189526830029 >500 2.8784463515386633E-5 0.016520179728835557 >1k 1.4381243739604536E-5 0.01532821026437465 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.243859973092041E-6 2 0.0 1.6487719946184083E-5 0.0 0.0 8.243859973092041E-6 3 0.0 1.6487719946184083E-5 0.0 0.0 8.243859973092041E-6 4 0.0 8.243859973092041E-5 0.0 2.4731579919276124E-5 8.243859973092041E-6 5 0.0 8.243859973092041E-5 0.0 3.2975439892368166E-5 8.243859973092041E-6 6 8.243859973092041E-6 8.243859973092041E-5 0.0 3.2975439892368166E-5 1.6487719946184083E-5 7 8.243859973092041E-6 8.243859973092041E-5 0.0 4.946315983855225E-5 1.6487719946184083E-5 8 8.243859973092041E-6 1.0717017965019654E-4 0.0 4.946315983855225E-5 2.4731579919276124E-5 9 8.243859973092041E-6 1.8960877938111695E-4 0.0 7.419473975782837E-5 3.2975439892368166E-5 10-11 8.243859973092041E-6 1.8960877938111695E-4 0.0 9.89263196771045E-5 4.121929986546021E-5 12-13 8.243859973092041E-6 1.8960877938111695E-4 0.0 1.1129210963674256E-4 4.121929986546021E-5 14-15 8.243859973092041E-6 2.2258421927348512E-4 0.0 1.2777982958292664E-4 5.770701981164429E-5 16-17 2.4731579919276124E-5 2.2258421927348512E-4 0.0 1.4426754952911073E-4 9.068245970401246E-5 18-19 2.4731579919276124E-5 2.390719392196692E-4 0.0 1.607552694752948E-4 9.89263196771045E-5 20-21 2.4731579919276124E-5 2.596815891523993E-4 0.0 1.97852639354209E-4 9.89263196771045E-5 22-23 2.8853509905822145E-5 3.0914474899095153E-4 0.0 2.3082807924657716E-4 1.0717017965019654E-4 24-25 3.2975439892368166E-5 3.338763289102277E-4 0.0 2.967789590313135E-4 1.1541403962328858E-4 26-27 3.2975439892368166E-5 3.4624211886986574E-4 0.0 3.9158334872187194E-4 1.1541403962328858E-4 28-29 3.2975439892368166E-5 3.4624211886986574E-4 0.0 9.109465270266705E-4 1.1541403962328858E-4 30-31 3.2975439892368166E-5 3.7097369878914187E-4 0.0 0.0026710106312818212 1.195359696098346E-4 32-33 3.2975439892368166E-5 3.7097369878914187E-4 0.0 0.006166407259872847 1.2365789959638062E-4 34-35 3.2975439892368166E-5 4.2868071860078616E-4 0.0 0.011442477642651754 1.2365789959638062E-4 36-37 3.2975439892368166E-5 4.8638773841243045E-4 0.0 0.01876714722874403 1.2365789959638062E-4 38-39 3.2975439892368166E-5 5.069973883451605E-4 0.0 0.029183264304745826 1.2777982958292664E-4 40-41 3.2975439892368166E-5 5.688263381433508E-4 0.0 0.039830209459994194 1.3602368955601868E-4 42-43 3.2975439892368166E-5 5.93557918062627E-4 0.0 0.04929416070910386 1.4426754952911073E-4 44-45 3.2975439892368166E-5 6.759965177935473E-4 0.0 0.060369786582953014 1.566333394887488E-4 46-47 3.2975439892368166E-5 7.337035376051916E-4 0.0 0.0719400440551877 1.6487719946184083E-4 48-49 3.2975439892368166E-5 7.337035376051916E-4 0.0 0.0834938138074762 1.7312105943493287E-4 50-51 3.2975439892368166E-5 8.202640673226581E-4 0.0 0.09434273353206532 1.772429894214789E-4 52-53 3.2975439892368166E-5 8.243859973092041E-4 0.0 0.10433429181945286 2.1021842931384706E-4 54-55 3.2975439892368166E-5 8.243859973092041E-4 0.0 0.11448248344632916 2.2258421927348512E-4 56-57 3.2975439892368166E-5 8.408737172553882E-4 0.0 0.12398353206531776 2.2670614926003114E-4 58-59 3.2975439892368166E-5 8.408737172553882E-4 0.0 0.13287041311631098 2.3082807924657716E-4 60-61 3.709736987891419E-5 8.491175772284802E-4 0.0 0.14079276255045242 2.3082807924657716E-4 62-63 4.121929986546021E-5 8.656052971746644E-4 0.0 0.14855023478513202 2.3082807924657716E-4 64-65 4.121929986546021E-5 9.604096868652229E-4 0.0 0.15674463159838553 2.3082807924657716E-4 66-67 4.121929986546021E-5 9.645316168517688E-4 0.0 0.16423417838393967 2.3082807924657716E-4 68-69 4.121929986546021E-5 9.810193367979529E-4 0.0 0.17171960323950722 2.3495000923312318E-4 70-71 4.121929986546021E-5 0.001001628986730683 0.0 0.17906076054554568 2.4731579919276124E-4 72-73 4.946315983855225E-5 0.001005750916717229 0.0 0.18498809586619885 2.6380351913894533E-4 74-75 4.946315983855225E-5 0.001013994776690321 0.0 0.18972419342074023 2.7204737911203737E-4 76-77 4.946315983855225E-5 0.0010346044266230513 0.0 0.19430365763579288 2.7204737911203737E-4 78-79 4.946315983855225E-5 0.0010469702165826892 0.0 0.19829780779275596 2.7204737911203737E-4 80-81 4.946315983855225E-5 0.0010469702165826892 0.0 0.1999218482074551 2.802912390851294E-4 82-83 4.946315983855225E-5 0.0010469702165826892 0.0 0.20059372279526208 3.0502281900440554E-4 84-85 4.946315983855225E-5 0.0010469702165826892 0.0 0.20134803598280002 3.0502281900440554E-4 86-87 4.946315983855225E-5 0.0010552140765557813 0.0 0.2016077175719524 3.0502281900440554E-4 88-89 4.946315983855225E-5 0.0011376526762867016 0.0 0.20171076582161607 3.0914474899095153E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10715 0.0 41.4633 1 GTATCAA 18275 0.0 33.112556 1 TCAACGC 20410 0.0 28.610348 4 ATCAACG 20740 0.0 28.19497 3 CAACGCA 21260 0.0 27.428392 5 AACGCAG 22125 0.0 26.356047 6 TATCAAC 22770 0.0 26.110857 2 GTACATG 29285 0.0 22.16534 1 ACGCAGA 26370 0.0 22.128551 7 CGCAGAG 27085 0.0 21.544395 8 TACATGG 29385 0.0 21.341568 2 ACATGGG 29760 0.0 20.566103 3 CATGGGG 21750 0.0 18.478848 4 GCAGAGT 33885 0.0 17.124756 9 GAGTACT 19245 0.0 16.017376 12-13 AGAGTAC 29585 0.0 16.000711 10-11 CAGAGTA 32655 0.0 15.537683 10-11 GAGTACA 20805 0.0 15.247584 1 GTGGTAT 6510 0.0 15.137902 1 ATGGGGG 13480 0.0 14.560548 5 >>END_MODULE