##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139768_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8740555 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.56706444842462 34.0 31.0 34.0 31.0 34.0 2 32.74590583778719 34.0 31.0 34.0 31.0 34.0 3 32.83704947797937 34.0 31.0 34.0 31.0 34.0 4 36.23809391966528 37.0 37.0 37.0 35.0 37.0 5 36.09511421185497 37.0 35.0 37.0 35.0 37.0 6 36.11934184957362 37.0 36.0 37.0 35.0 37.0 7 36.13914505429003 37.0 36.0 37.0 35.0 37.0 8 36.13459820343216 37.0 36.0 37.0 35.0 37.0 9 38.002069090578345 39.0 38.0 39.0 35.0 39.0 10-11 37.889392721629235 39.0 38.0 39.0 35.0 39.0 12-13 37.921914340679734 39.0 38.0 39.0 35.0 39.0 14-15 39.28617742237192 40.0 39.0 41.0 36.0 41.0 16-17 39.25906524242454 40.0 39.0 41.0 36.0 41.0 18-19 39.28278021246935 40.0 39.0 41.0 36.0 41.0 20-21 39.31929747194785 40.0 39.0 41.0 36.0 41.0 22-23 39.28510131175419 40.0 39.0 41.0 36.0 41.0 24-25 39.28078685283353 40.0 39.0 41.0 36.0 41.0 26-27 39.191677215712815 40.0 39.0 41.0 36.0 41.0 28-29 39.12108951026373 40.0 39.0 41.0 36.0 41.0 30-31 39.01363803171665 40.0 39.0 41.0 36.0 41.0 32-33 38.96401256621593 40.0 38.0 41.0 35.0 41.0 34-35 38.91173619276876 40.0 38.0 41.0 35.0 41.0 36-37 38.84944601289935 40.0 38.0 41.0 35.0 41.0 38-39 38.77290831819496 40.0 38.0 41.0 35.0 41.0 40-41 38.75195650890687 40.0 38.0 41.0 35.0 41.0 42-43 38.69652039285759 40.0 38.0 41.0 35.0 41.0 44-45 38.67252146660002 40.0 38.0 41.0 35.0 41.0 46-47 38.57220699189747 40.0 38.0 41.0 34.5 41.0 48-49 38.55950191521792 40.0 38.0 41.0 34.5 41.0 50-51 38.495630689752424 40.0 38.0 41.0 34.0 41.0 52-53 38.331151064158945 40.0 38.0 41.0 34.0 41.0 54-55 38.19744291808064 40.0 37.0 41.0 34.0 41.0 56-57 38.01506675469899 40.0 37.0 41.0 33.5 41.0 58-59 37.80412923357983 39.5 36.5 41.0 33.0 41.0 60-61 37.64912409450744 39.0 36.0 41.0 33.0 41.0 62-63 37.4816952482388 39.0 36.0 41.0 33.0 41.0 64-65 37.213647450071605 39.0 35.0 40.0 32.5 41.0 66-67 37.00840958766653 38.0 35.0 40.0 32.0 41.0 68-69 36.724409631058734 37.5 35.0 40.0 32.0 41.0 70-71 36.386867886746174 37.0 35.0 39.5 32.0 41.0 72-73 36.118584490321055 36.5 35.0 39.0 32.0 41.0 74-75 35.75084422563786 36.0 34.5 39.0 31.5 40.5 76-77 33.74583521508844 34.5 32.0 36.5 29.0 39.0 78-79 34.870015547464234 35.0 34.0 37.0 30.5 39.0 80-81 34.82753278021239 35.0 34.0 37.0 31.0 39.0 82-83 34.577432864303645 35.0 34.0 36.5 31.0 39.0 84-85 34.29540504461035 35.0 34.0 36.0 31.0 37.0 86-87 34.07519319137107 35.0 34.0 36.0 31.0 37.0 88-89 33.866511939304544 35.0 34.0 35.0 30.0 36.5 90-91 33.80868300456184 35.0 34.0 35.0 30.5 36.0 92-93 33.722479519081226 35.0 34.0 35.0 30.5 36.0 94-95 33.63817996349867 35.0 34.0 35.0 30.0 36.0 96-97 33.64031845062598 35.0 34.0 35.0 30.5 35.5 98-99 33.69768355515852 35.0 34.0 35.0 31.0 35.0 100-101 32.43648078046918 34.0 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 12.0 20 36.0 21 156.0 22 567.0 23 1913.0 24 5064.0 25 11434.0 26 21415.0 27 35947.0 28 53638.0 29 75439.0 30 101880.0 31 134884.0 32 178251.0 33 245729.0 34 363605.0 35 579481.0 36 1084838.0 37 2154152.0 38 2661938.0 39 1012144.0 40 18029.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.6277278731156 19.7433114945218 13.01167946429031 24.61728116807228 2 15.215083178248651 21.289403008059367 40.17550254645504 23.32001126723694 3 18.825000340374334 25.33798027247566 30.204074721262025 25.63294466588798 4 12.718063573614044 17.386187744357798 38.50860927728155 31.387139404746613 5 13.251265308812233 37.725320385870276 35.840291130287625 13.183123175029868 6 30.86185679485578 37.596647523649615 18.44250985410028 13.09898582739433 7 27.11860974503335 32.15660790418915 22.896681045997653 17.828101304779846 8 24.796935021952844 36.650820222796 21.136822937498685 17.41542181775247 9 25.618815803398537 16.39327157121569 21.01045417752366 36.97745844786212 10-11 24.377429027449715 26.61383755718131 29.036499531291625 19.972233884077355 12-13 24.93914710472018 24.02077765054824 29.161286329325787 21.878788915405796 14-15 21.964372389502838 25.634884064823133 26.405624816051386 25.99511872962264 16-17 21.920289969067625 28.7973190606484 27.1818027729133 22.100588197370673 18-19 21.995954490304108 28.11670998008708 28.532970732407726 21.354364797201093 20-21 22.58468931699704 27.38485375238653 28.473305735982805 21.55715119463363 22-23 22.267436624856156 27.348718994973197 28.32424360212643 22.05960077804422 24-25 22.121863235649418 27.404389624590287 28.41374393745922 22.06000320230108 26-27 22.1025191960953 27.59207608404636 28.34070848765859 21.964696232199753 28-29 22.090927884455382 27.631723583208885 28.333553962658293 21.943794569677443 30-31 22.25679856801734 27.53881765989586 28.30780056126672 21.89658321082008 32-33 22.035659137875378 27.683942512762833 28.282325304850293 21.9980730445115 34-35 22.245207618790477 27.67141491749035 28.228751860494217 21.854625603224957 36-37 22.189907493888725 27.651574437621466 28.169059004886705 21.989459063603103 38-39 22.02032884690516 27.701865545241063 28.32601345736343 21.951792150490355 40-41 22.255754501164326 27.579611997014595 28.200116944920815 21.964516556900264 42-43 22.14964609192594 27.635400966374874 28.0925722497744 22.122380691924786 44-45 22.164470925005908 27.74434864755364 27.99211819338584 22.099062234054614 46-47 22.274680336235775 27.683493099873907 27.74374298426428 22.298083579626034 48-49 22.176209415760265 27.755546837381946 27.810861174712137 22.257382572145655 50-51 22.156608120315198 27.87721107060862 27.775756538311036 22.190424270765146 52-53 22.323269169990915 27.79133927737228 27.65737737618596 22.228014176450845 54-55 22.274167861310897 27.684294392718645 27.714009999384853 22.327527746585602 56-57 22.248356093209193 27.82681681627982 27.665480987407065 22.259346103103926 58-59 22.254836353169928 27.817511454417755 27.706910819008467 22.22074137340385 60-61 22.3044746600118 27.783469606109712 27.691820133179323 22.220235600699166 62-63 22.258663522463237 27.894671049282564 27.643241118208927 22.203424310045268 64-65 22.226737686920224 27.861461187723496 27.58422446509517 22.327576660261112 66-67 22.251079527141883 27.911205666483045 27.5003325423595 22.33738226401557 68-69 22.236277853781765 27.90467539487705 27.5037650332422 22.35528171809898 70-71 22.24166667434211 27.727589892469695 27.571366146591902 22.459377286596297 72-73 22.3020834453426 27.728774692318016 27.507046129497446 22.462095732841938 74-75 22.190988121184237 27.866838189375294 27.46318891497112 22.478984774469353 76-77 22.321629813962716 27.79893714600135 27.42025081711225 22.459182222923683 78-79 22.30970940680102 27.779675769388973 27.37263498880026 22.53797983500975 80-81 22.303870508459493 27.796638790535923 27.395944519169973 22.50354618183461 82-83 22.348012332365556 27.79625647574764 27.455340325161544 22.40039086672526 84-85 22.43296728357864 27.79343471100997 27.391855626565036 22.381742378846354 86-87 22.307168944722378 27.784921863699356 27.503354660547245 22.404554531031017 88-89 22.3655373840159 27.784831109931034 27.453416193640518 22.39621531241254 90-91 22.379526120584245 27.835783181869665 27.462061474207612 22.322629223338474 92-93 22.410208439965405 27.78710502009095 27.516369861804833 22.286316678138807 94-95 22.31585155624188 27.847106918679685 27.533571562855336 22.303469962223094 96-97 22.31402566104084 27.84059991966715 27.572985426408287 22.27238899288372 98-99 22.561325142950437 28.401294650216 27.648154967577852 21.389225239255712 100-101 23.32282641712318 31.036443190073843 24.68202687215687 20.958703520646104 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1693.0 1 1415.5 2 1606.0 3 2218.5 4 2941.0 5 4686.0 6 6279.5 7 7432.0 8 8220.5 9 8166.5 10 7488.0 11 6857.5 12 7415.5 13 9840.0 14 15376.5 15 22406.0 16 27961.0 17 31495.0 18 32878.0 19 32192.0 20 30517.5 21 29356.0 22 29952.0 23 33792.5 24 41370.5 25 52332.0 26 67125.5 27 84021.5 28 102504.0 29 122553.0 30 142525.0 31 162486.5 32 182545.5 33 201838.0 34 220421.5 35 239169.0 36 260388.0 37 279017.5 38 293584.5 39 308358.5 40 323687.0 41 338475.5 42 348205.0 43 355909.5 44 364253.5 45 369232.5 46 371722.5 47 374081.0 48 372117.5 49 365804.0 50 358716.5 51 347177.5 52 331020.5 53 313805.0 54 294782.0 55 273584.5 56 251124.0 57 227881.5 58 203488.5 59 176463.0 60 148030.5 61 120794.5 62 95721.5 63 73936.5 64 55831.0 65 41666.5 66 31210.0 67 23896.5 68 18298.5 69 13539.5 70 9843.0 71 7139.5 72 5146.5 73 3574.5 74 2407.5 75 1618.0 76 1113.5 77 766.5 78 533.0 79 368.5 80 251.0 81 179.0 82 129.0 83 83.5 84 54.0 85 38.5 86 32.0 87 27.5 88 17.5 89 10.5 90 9.0 91 8.5 92 8.5 93 5.5 94 1.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019335156634790354 3 0.002036483953250108 4 4.805186855983401E-4 5 1.1440921085674765E-5 6 3.546685536559177E-4 7 0.0 8 3.4322763257024296E-5 9 3.4322763257024297E-4 10-11 5.205619093982018E-4 12-13 1.0868875031391027E-4 14-15 2.8602302714186916E-5 16-17 4.175936196271289E-4 18-19 0.0 20-21 9.153088726952952E-5 22-23 2.2884994549366422E-5 24-25 0.0 26-27 8.586736514616172E-5 28-29 2.176693059070008E-4 30-31 6.137096424969265E-4 32-33 3.333821910682313E-4 34-35 0.0010375600783311745 36-37 1.2155391046165307E-4 38-39 1.5718065867544674E-4 40-41 3.1622462465747455E-4 42-43 0.0013199414275991504 44-45 3.442550830450098E-4 46-47 2.094915096383153E-4 48-49 3.198396794554663E-4 50-51 0.0 52-53 4.347008061495837E-4 54-55 6.41029513122059E-4 56-57 7.450798651107412E-4 58-59 7.133051878123174E-4 60-61 8.072555625426607E-4 62-63 6.990691576407306E-5 64-65 8.45441561638166E-4 66-67 0.0026292604516979013 68-69 0.0014276348516827544 70-71 2.8947296052812496E-4 72-73 0.0 74-75 1.2721571272067406E-4 76-77 6.756343615474865E-6 78-79 0.0010978681242173002 80-81 1.9282982939725183E-4 82-83 1.6696543043374907E-4 84-85 8.852394541107674E-4 86-87 3.1938906691477754E-4 88-89 2.8704486166734025E-5 90-91 7.260961346925756E-6 92-93 1.9120197355735537E-4 94-95 6.857909920756851E-4 96-97 1.5157139368835495E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 230.0 20-21 706.0 22-23 1456.0 24-25 2838.0 26-27 4577.0 28-29 9159.0 30-31 17753.0 32-33 22564.0 34-35 32087.0 36-37 46873.0 38-39 51280.0 40-41 52068.0 42-43 58261.0 44-45 69420.0 46-47 69364.0 48-49 64753.0 50-51 57722.0 52-53 53213.0 54-55 58102.0 56-57 61277.0 58-59 63173.0 60-61 61412.0 62-63 60038.0 64-65 64923.0 66-67 69770.0 68-69 70279.0 70-71 68199.0 72-73 64949.0 74-75 67491.0 76-77 66548.0 78-79 71497.0 80-81 73623.0 82-83 70685.0 84-85 71013.0 86-87 75666.0 88-89 80571.0 90-91 86013.0 92-93 89472.0 94-95 101732.0 96-97 167120.0 98-99 770220.0 100-101 5692458.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.95545574402428 #Duplication Level Percentage of deduplicated Percentage of total 1 90.8139880092453 78.96771715276282 2 6.636387886105499 11.541402662608512 3 1.4659837796321735 3.8242586301378876 4 0.5209673847350758 1.812038254696438 5 0.22961587057678687 0.9983176336032697 6 0.11003616533882019 0.574094694321715 7 0.06416859648736561 0.39058666864092906 8 0.04296820091420461 0.29890555943963704 9 0.026272009187676682 0.2056045079003057 >10 0.08732869686997917 1.1829013021719408 >50 0.0018484510968618157 0.10635517889596392 >100 3.950549074062186E-4 0.06345652677753627 >500 1.9947462223800224E-5 0.0135294172151366 >1k 1.9947440581212122E-5 0.020831810827860398 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1440921085674765E-5 0.0 0.0 0.0 3 0.0 1.1440921085674765E-5 0.0 0.0 0.0 4 0.0 2.288184217134953E-5 0.0 1.1440921085674765E-5 0.0 5 0.0 2.288184217134953E-5 0.0 3.4322763257024296E-5 0.0 6 4.576368434269906E-5 2.288184217134953E-5 0.0 3.4322763257024296E-5 0.0 7 4.576368434269906E-5 2.288184217134953E-5 0.0 5.7204605428373826E-5 0.0 8 4.576368434269906E-5 2.288184217134953E-5 0.0 5.7204605428373826E-5 0.0 9 4.576368434269906E-5 5.7204605428373826E-5 0.0 6.864552651404859E-5 1.1440921085674765E-5 10-11 6.292506597121121E-5 5.7204605428373826E-5 0.0 6.864552651404859E-5 1.1440921085674765E-5 12-13 6.864552651404859E-5 5.7204605428373826E-5 0.0 6.864552651404859E-5 1.7161381628512148E-5 14-15 6.864552651404859E-5 6.864552651404859E-5 0.0 6.864552651404859E-5 3.4322763257024296E-5 16-17 8.008644759972336E-5 8.008644759972336E-5 0.0 9.152736868539812E-5 3.4322763257024296E-5 18-19 8.008644759972336E-5 1.029682897710729E-4 0.0 1.3729105302809718E-4 4.004322379986168E-5 20-21 9.152736868539812E-5 1.3157059248525982E-4 0.0 2.288184217134953E-4 4.576368434269906E-5 22-23 1.1440921085674765E-4 1.6017289519944673E-4 0.0 3.3178671148456824E-4 4.576368434269906E-5 24-25 1.4873197411377194E-4 1.7161381628512149E-4 0.0 3.947117774557794E-4 4.576368434269906E-5 26-27 1.4873197411377194E-4 1.7161381628512149E-4 0.0 5.320028304838766E-4 4.576368434269906E-5 28-29 2.059365795421458E-4 1.7161381628512149E-4 0.0 0.0013729105302809719 6.292506597121121E-5 30-31 2.059365795421458E-4 2.4025934279917006E-4 0.0 0.0039928814589004925 8.008644759972336E-5 32-33 2.059365795421458E-4 2.68861645513357E-4 0.0 0.008866713841397943 8.008644759972336E-5 34-35 2.059365795421458E-4 3.260662509417308E-4 0.0 0.01584567570365955 8.008644759972336E-5 36-37 2.1737750062782055E-4 3.88991316912942E-4 0.0 0.025404565270740816 8.008644759972336E-5 38-39 2.1737750062782055E-4 3.88991316912942E-4 0.0 0.04176508242325573 8.008644759972336E-5 40-41 2.1737750062782055E-4 4.233140801699663E-4 0.0 0.07518401291451172 8.580690814256074E-5 42-43 2.3453888225633267E-4 4.233140801699663E-4 0.0 0.08902752742817818 9.152736868539812E-5 44-45 2.4025934279917006E-4 4.805186855983401E-4 0.0 0.10779635846922764 9.152736868539812E-5 46-47 2.4025934279917006E-4 5.37723291026714E-4 0.0 0.12784657267187266 9.152736868539812E-5 48-49 2.4597980334200746E-4 5.434437515695514E-4 0.0 0.14616348733003798 9.152736868539812E-5 50-51 2.574207244276822E-4 6.120892780835999E-4 0.0 0.1634621600115782 1.029682897710729E-4 52-53 2.631411849705196E-4 6.178097386264373E-4 0.0 0.1867158321182122 1.029682897710729E-4 54-55 2.7458210605619437E-4 6.235301991692748E-4 0.0 0.23248523692145406 1.0868875031391027E-4 56-57 2.974639482275439E-4 6.635734229691364E-4 0.0 0.28346598127922085 1.2012967139958503E-4 58-59 3.0890486931321867E-4 6.635734229691364E-4 0.0 0.333131019712135 1.4301151357093455E-4 60-61 3.260662509417308E-4 6.750143440548112E-4 0.0 0.36159031091275096 1.5445243465660933E-4 62-63 3.317867114845682E-4 6.864552651404859E-4 0.0 0.3859079886803527 1.6017289519944673E-4 64-65 3.317867114845682E-4 7.207780283975102E-4 0.0 0.396696777264144 1.6017289519944673E-4 66-67 3.4322763257024297E-4 7.207780283975102E-4 0.0 0.4022742262934104 1.6589335574228412E-4 68-69 3.4322763257024297E-4 7.379394100260224E-4 0.0 0.40791460038864813 1.7733427682795885E-4 70-71 3.4894809311308036E-4 7.436598705688598E-4 0.0 0.41336047882542926 2.0593657954214576E-4 72-73 3.775503958272673E-4 7.436598705688598E-4 0.0 0.41775379252232836 2.4025934279917006E-4 74-75 3.775503958272673E-4 7.722621732830467E-4 0.0 0.420968691347403 2.4025934279917006E-4 76-77 3.775503958272673E-4 8.065849365400709E-4 0.0 0.4237202328685078 2.4025934279917006E-4 78-79 3.775503958272673E-4 8.123053970829084E-4 0.0 0.42608850353324246 2.4025934279917006E-4 80-81 3.775503958272673E-4 8.123053970829084E-4 0.0 0.42714678873366735 2.5170026388484485E-4 82-83 3.775503958272673E-4 8.180258576257458E-4 0.0 0.4274728549846091 2.631411849705196E-4 84-85 3.775503958272673E-4 8.294667787114205E-4 0.0 0.4278504053804364 2.631411849705196E-4 86-87 3.88991316912942E-4 8.351872392542578E-4 0.0 0.4280449010388928 2.631411849705196E-4 88-89 3.88991316912942E-4 8.695100025112822E-4 0.0 0.4281192670259497 2.631411849705196E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7870 0.0 46.117676 1 GTATCAA 13310 0.0 33.7535 1 TCAACGC 14730 0.0 29.26823 4 ATCAACG 15095 0.0 28.589272 3 CAACGCA 15330 0.0 28.09439 5 AACGCAG 16120 0.0 26.878338 6 TATCAAC 16840 0.0 26.114292 2 GTACATG 21435 0.0 22.771166 1 ACGCAGA 19345 0.0 22.442072 7 TACATGG 21315 0.0 22.089483 2 CGCAGAG 19780 0.0 21.883076 8 ACATGGG 21290 0.0 21.608158 3 CATGGGG 16515 0.0 18.631365 4 GAGTACT 13735 0.0 17.689465 12-13 GCAGAGT 24970 0.0 17.248278 9 AGAGTAC 21060 0.0 16.62901 10-11 CAGAGTA 23840 0.0 16.554407 10-11 GAGTACA 15285 0.0 15.952515 1 GTACTTT 15505 0.0 15.809711 14-15 GTGGTAT 4575 0.0 15.564637 1 >>END_MODULE