FastQCFastQC Report
Fri 27 May 2016
SRR2139767_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2139767_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8896047
Sequences flagged as poor quality0
Sequence length19-101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA106050.044.3662641
CTTATAC145350.036.9781151
GTATCAA184550.035.57771
TATACAC172200.032.5658453
TTATACA176450.031.0371192
TCAACGC215900.029.6059824
ATCAACG219700.029.0363563
CAACGCA224300.028.4403925
AACGCAG231150.027.7076026
TATCAAC235150.027.4173052
TACACAT224800.024.983195
GTACATG289400.024.3282931
TACATGG286800.023.8394262
ACACATC231950.023.3724656
ACGCAGA275450.023.2667057
ACATGGG293450.022.9522613
CGCAGAG279600.022.9213668
ACATCTC243400.022.3599248
ATACACA261450.022.324214
CACATCT256700.020.9867697
Produced by FastQC (version 0.11.5)